Lag0041556 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0041556
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Gag-pro-like protein
Location	chr13: 20397753 .. 20398109 (+)
RNA-Seq Expression	Lag0041556
Synteny	Lag0041556

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGTAGAAGTAGCACAGTCAAGCAATTCAATTCAAAAAATTGACGATCCTACTTATCCACCAAAATTTACTCCTCAACATGTACGACAACACATGCAAGTTCCACAGTCACAAACTACCGAACAATATGTTGCTATGAATCCACTCTACATTATTTCTCCCGTTGTCCCAGATATAGAGCAATTGGAAGGTCAAGCTGAAATTCAAATCAATAATATTACATTGCATGGTCAAAAATCGGAGACGAGACAACACAAGGGCATTCACACAAAGGAAAAGTTGGTTGTTCTAGAAGAAATGTTACGAGCAATTGAAGTGACAAATGTTTATGGAAATATTGATGCCACATATTAA

mRNA sequence

ATGATTGTAGAAGTAGCACAGTCAAGCAATTCAATTCAAAAAATTGACGATCCTACTTATCCACCAAAATTTACTCCTCAACATGTACGACAACACATGCAAGTTCCACAGTCACAAACTACCGAACAATATGTTGCTATGAATCCACTCTACATTATTTCTCCCGTTGTCCCAGATATAGAGCAATTGGAAGGTCAAGCTGAAATTCAAATCAATAATATTACATTGCATGGTCAAAAATCGGAGACGAGACAACACAAGGGCATTCACACAAAGGAAAAGTTGGTTGTTCTAGAAGAAATGTTACGAGCAATTGAAGTGACAAATGTTTATGGAAATATTGATGCCACATATTAA

Coding sequence (CDS)

ATGATTGTAGAAGTAGCACAGTCAAGCAATTCAATTCAAAAAATTGACGATCCTACTTATCCACCAAAATTTACTCCTCAACATGTACGACAACACATGCAAGTTCCACAGTCACAAACTACCGAACAATATGTTGCTATGAATCCACTCTACATTATTTCTCCCGTTGTCCCAGATATAGAGCAATTGGAAGGTCAAGCTGAAATTCAAATCAATAATATTACATTGCATGGTCAAAAATCGGAGACGAGACAACACAAGGGCATTCACACAAAGGAAAAGTTGGTTGTTCTAGAAGAAATGTTACGAGCAATTGAAGTGACAAATGTTTATGGAAATATTGATGCCACATATTAA

Protein sequence

MIVEVAQSSNSIQKIDDPTYPPKFTPQHVRQHMQVPQSQTTEQYVAMNPLYIISPVVPDIEQLEGQAEIQINNITLHGQKSETRQHKGIHTKEKLVVLEEMLRAIEVTNVYGNIDATY

Homology

[Close]

BLAST of Lag0041556 vs. NCBI nr
Match: TYK16462.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 8.0e-23
Identity = 67/117 (57.26%), Postives = 78/117 (66.67%), Query Frame = 0


Query: 1   MIVEVAQSSNSIQKIDDPTYPPKFTPQHVRQHMQVPQSQTTEQYVAMNPLYIISPVVPDI 60
           +IV+ AQSSN IQ  DDP YPP FTP     HM VPQSQTT+ YV  NPLY++ P+VP I
Sbjct: 231 VIVDTAQSSNPIQDTDDPIYPPGFTP----YHMNVPQSQTTQHYVLKNPLYVVPPIVPGI 290

Query: 61  EQLEGQAEIQINNITLHGQKSETRQHKGIHTKEKLVVLEEMLRAIEVTNVYGNIDAT 118
           E LE QA+IQ           +  Q++   TKEKL VLEE L AIE T+VYGNIDAT
Sbjct: 291 EHLEAQAKIQ-----------DMGQNENTPTKEKLDVLEERLLAIEGTDVYGNIDAT 332

[Close]

BLAST of Lag0041556 vs. NCBI nr
Match: KAA0036957.1 (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 1.8e-22
Identity = 63/116 (54.31%), Postives = 77/116 (66.38%), Query Frame = 0


Query: 2   IVEVAQSSNSIQKIDDPTYPPKFTPQHVRQHMQVPQSQTTEQYVAMNPLYIISPVVPDIE 61
           +V+ AQSSN IQ  DDP YPP FTP H+     VPQSQTT+ YV  NPLY++ P++P IE
Sbjct: 37  VVDTAQSSNPIQDTDDPIYPPGFTPYHI----NVPQSQTTQHYVPTNPLYVVPPIIPGIE 96

Query: 62  QLEGQAEIQINNITLHGQKSETRQHKGIHTKEKLVVLEEMLRAIEVTNVYGNIDAT 118
            LE QA+IQ           +  Q++    K+KL VLEE LRAIE T+VYGNIDAT
Sbjct: 97  HLEAQAKIQ-----------DMEQNENTPAKQKLDVLEERLRAIEETDVYGNIDAT 137

[Close]

BLAST of Lag0041556 vs. NCBI nr
Match: KAA0036942.1 (uncharacterized protein E6C27_scaffold86G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 1.8e-22
Identity = 63/116 (54.31%), Postives = 77/116 (66.38%), Query Frame = 0


Query: 2   IVEVAQSSNSIQKIDDPTYPPKFTPQHVRQHMQVPQSQTTEQYVAMNPLYIISPVVPDIE 61
           +V+ AQSSN IQ  DDP YPP FTP H+     VPQSQTT+ YV  NPLY++ P++P IE
Sbjct: 37  VVDTAQSSNPIQDTDDPIYPPGFTPYHI----NVPQSQTTQHYVPTNPLYVVPPIIPGIE 96

Query: 62  QLEGQAEIQINNITLHGQKSETRQHKGIHTKEKLVVLEEMLRAIEVTNVYGNIDAT 118
            LE QA+IQ           +  Q++    K+KL VLEE LRAIE T+VYGNIDAT
Sbjct: 97  HLEAQAKIQ-----------DMEQNENTPAKQKLDVLEERLRAIEETDVYGNIDAT 137

[Close]

BLAST of Lag0041556 vs. NCBI nr
Match: XP_031738551.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 5.2e-22
Identity = 65/117 (55.56%), Postives = 78/117 (66.67%), Query Frame = 0


Query: 1   MIVEVAQSSNSIQKIDDPTYPPKFTPQHVRQHMQVPQSQTTEQYVAMNPLYIISPVVPDI 60
           ++VE AQSSN +Q  DDP YPP FTP    +HM   QSQT + YVAMNPL+ + P VPDI
Sbjct: 384 VVVETAQSSNPVQDTDDPIYPPGFTP----RHMNATQSQTAQHYVAMNPLFDVPPPVPDI 443

Query: 61  EQLEGQAEIQINNITLHGQKSETRQHKGIHTKEKLVVLEEMLRAIEVTNVYGNIDAT 118
           EQLE QA+IQ           +  Q++    K+KL VLEE LRAIE T+VYGNIDAT
Sbjct: 444 EQLEAQAKIQ-----------DMGQNENTPAKQKLDVLEERLRAIEGTDVYGNIDAT 485

[Close]

BLAST of Lag0041556 vs. NCBI nr
Match: XP_031739260.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC116402917 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 5.2e-22
Identity = 65/117 (55.56%), Postives = 78/117 (66.67%), Query Frame = 0


Query: 1   MIVEVAQSSNSIQKIDDPTYPPKFTPQHVRQHMQVPQSQTTEQYVAMNPLYIISPVVPDI 60
           ++VE AQSSN +Q  DDP YPP FTP    +HM   QSQT + YVAMNPL+ + P VPDI
Sbjct: 94  VVVETAQSSNPVQDTDDPIYPPGFTP----RHMNATQSQTAQHYVAMNPLFDVPPPVPDI 153

Query: 61  EQLEGQAEIQINNITLHGQKSETRQHKGIHTKEKLVVLEEMLRAIEVTNVYGNIDAT 118
           EQLE QA+IQ           +  Q++    K+KL VLEE LRAIE T+VYGNIDAT
Sbjct: 154 EQLEAQAKIQ-----------DMGQNENTPAKQKLDVLEERLRAIEGTDVYGNIDAT 195

The following BLAST results are available for this feature:

BLAST of Lag0041556 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK16462.1	8.0e-23	57.26	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0036957.1	1.8e-22	54.31	RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein...	[more]
KAA0036942.1	1.8e-22	54.31	uncharacterized protein E6C27_scaffold86G00180 [Cucumis melo var. makuwa]	[more]
XP_031738551.1	5.2e-22	55.56	LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]	[more]
XP_031739260.1	5.2e-22	55.56	LOW QUALITY PROTEIN: uncharacterized protein LOC116402917 [Cucumis sativus]	[more]

BLAST of Lag0041556 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0041556.1	Lag0041556.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid