Lag0041553 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0041553
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr13: 20294129 .. 20296389 (-)
RNA-Seq Expression	Lag0041553
Synteny	Lag0041553

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCTTCCTCCACAGAGTCTGAAACTCTGAACCCTACTCAGATTCTGAAGGCCATCAATCCTGGGAGCAAAACGAACACAGTAAAATTAGATGAAGATAATTTTCTGTATTGGAAGATTCAAGTGTGAACGACGCTGAAAGGCCACGGTCTTGGACAGTTCATTGATGAAGAAGCCCCAATTCCTCCCAAATTCATTCAATCCGGAGATGACCTCGCCTCCAAAATACCTAATCCTGAGTATGATTTTGGGTTCGTCAGGATAATCTTATTTCTTTGTGGGTCTTGGGATCAATGACCAATGAAATCTTGTCAGAGGTCCTTGATTGTGAAACTGCTTGAGACATTTGGAAGGTTCTCAATGCTCGTTTCTCCTCCCCCGCAATCTTTCTCAGGTTCTACAACTTAAAACCAAGCTGGAAACGACCAATAAAGGTAATCTTCCTCTTAAAGATTACTTTCTCAAGATCAAGACTACTGTCGACGCATTAGCAGCTGCTGGAAAGAAAATTTCCTAAGACGATCACGTCCTTCACATTCTTAAAGGATTGGGTTCAGAATATGACTCCACAGTGAACGTGATTACGGAGAAAGATATCACCCCACCTCTACCGAAAGTGTACTCGCTGCTGTTGACTCAAGAAAGCATAATTGAGAGGAACTCCACAATAAATACAAATGGCTCCTTACCGTCTGTAAACTACACTGCCACTCAAGCTCCCAAGCAACAGCAACCAAATACCCAAGATAATAAAAAACGTAACAATGGAGGACAAAGAAATTCGAAGAACAATGCACCAGAAACAATCGAAGGAACTGCAACAATAATGGGAAACCACAGTGTCAATTATGTTGTCGTTTTGGCCATACTGTTGTTCGTTGCTACTTCAGGTTTGAGCGATGGTATCAAGGTCCAAATGGCAACAACTCTCAAACACCTAATGGAGGAAAGTCATATCCGAATCAGAATGTTACTCCAAATTCTAACAATACCTACACTCAACAACAACCTTATGCAGCATACTCCCTCCAACATGAGTTAAAACATAGAGAATCAGTGGTATCTAGATTCAGGAGCCTCCAACCATGTTACAAGTGACCTCTCCAATCTGAATATTGGTGTTGATTACACTGGAGACAACAAAGTCCATGTAGGCAATGGTGCAGGTTTGGATGTCTTTCATATTGGTTCTTCCTCTCTTAAATCATCTTCTAATCCTAGCAATATTTTTCATTTTAAAAACCTGCTTCATGTTCCTCAAATAACAAAAAATCTCATAAGTGTTAGCCAATTCGCTAGAGATAATCAAGTGTTTTTTGAATTTCATCCTCACTGTTGTTTTGTGAAGGATACTCTAATTGGCCGAATTCTTCTCCAAGGCAAGGTGTCTGATGGACTGTATCAATTCTCATTGGAAAAGGTTGCATCCCAAGATTCTAAAGGTGGTTGCTCCTCTTCAAACTTCAAATCTCAAGTACTTCATACCTCTCTGTCTCCTTTTACCTGTAATACTTCACATATAGCTAGCTCCTGTAATATTGACCTATGGCATGAAAGATTAGGTCATCCCTCCCTTGTCATTGTTAGAAAAGTGTTACAAGCATGTAATATTCCTTATTCTGAAAATAAAGTCTCTCACTTGTGTCATGCCTGGGTTATTGGAAAAAAGCCATAAACTACCATTCTCTGATTCACAAACTCAATATAATGCACCTCTCCAACTTGTAGTTGCCGATATATGGGGTCCTTCATTTATTACTTCTTAAAATAACTTCCGATATTACATTAGCTTTGTAGATGTATATTCACGCTTAACGTGGATATACTTCCTAAATTCAAAAAATGAAGCCTTCCAAGCATTTATTATATCCAAAACTTATGTTGAGAAATTATTAGATCGACCTATTCTTCGTCTTCAAACTGACGGAGGAGGTGAATTTCGTTCCTTTGCCACTGATAACTGCCCAAAAGGTAGTTATTTAGGCCTCAATTATATAGGGATTTGTGTGTCCTTTATGCTTATTAGGGTTGGTTTTGGATAGATATTACATGTTTTAACCCATTTGGAAGAATGGAAGCATTGGAAATCACTTTGTGCAGATTATGCTGCTGAGCGACTGGAAGGAGCAAATTCTATGCTGCAGCAAAACTGGGAGCAGAAACTGCCACGTCACAGCTCGTTAGCCAACTTCATTAACCGACTTCTGTTGAGTTATTTTCGTGATAAAGGATCAAGGAGAGCCTTACACGTGTCCTAG

mRNA sequence

ATGGGTTCTTCCTCCACAGAGTCTGAAACTCTGAACCCTACTCAGATTCTGAAGGCCATCAATCCTGGGAGCAAAACGAACACAGTAAAATTAGATGAAGATAATTTTCTGTATTGGAAGATTCAAAGGTCCTTGATTGTGAAACTGCTTGAGACATTTGGAAGGTTCTCAATGCTCGTTTCTCCTCCCCCGCAATCTTTCTCAGGATTGGGTTCAGAATATGACTCCACAGTGAACGTGATTACGGAGAAAGATATCACCCCACCTCTACCGAAAGTGTACTCGCTGCTGTTGACTCAAGAAAGCATAATTGAGAGGAACTCCACAATAAATACAAATGGCTCCTTACCGTCTGTAAACTACACTGCCACTCAAGCTCCCAAGCAACAGCAACCAAATACCCAAGATAATAAAAAACGTAACAATGGAGGACAAAGAAATTCGAAGAACAATGCACCAGAAACAATCGAAGGAACTGCAACAATAATGGGAAACCACAGTGTCAATTATGTTGTCGTTTTGGCCATACTGTTGTTCGTTGCTACTTCAGGAGCCTCCAACCATGTTACAAGTGACCTCTCCAATCTGAATATTGGTGTTGATTACACTGGAGACAACAAAGTCCATGTAGGCAATGGTGCAGGTTTGGATGTCTTTCATATTGGTTCTTCCTCTCTTAAATCATCTTCTAATCCTAGCAATATTTTTCATTTTAAAAACCTGCTTCATGTTCCTCAAATAACAAAAAATCTCATAAGTGTTAGCCAATTCGCTAGAGATAATCAAGTGTTTTTTGAATTTCATCCTCACTGTTGTTTTGTGAAGGATACTCTAATTGGCCGAATTCTTCTCCAAGGCAAGGTGTCTGATGGACTGTATCAATTCTCATTGGAAAAGGTTGCATCCCAAGATTCTAAAGGTGGTTGCTCCTCTTCAAACTTCAAATCTCAAGTACTTCATACCTCTCTGTCTCCTTTTACCTATCGACCTATTCTTCGTCTTCAAACTGACGGAGGAGGTGAATTTCGTTCCTTTGCCACTGATAACTGCCCAAAAGATTATGCTGCTGAGCGACTGGAAGGAGCAAATTCTATGCTGCAGCAAAACTGGGAGCAGAAACTGCCACGTCACAGCTCGTTAGCCAACTTCATTAACCGACTTCTGTTGAGTTATTTTCGTGATAAAGGATCAAGGAGAGCCTTACACGTGTCCTAG

Coding sequence (CDS)

ATGGGTTCTTCCTCCACAGAGTCTGAAACTCTGAACCCTACTCAGATTCTGAAGGCCATCAATCCTGGGAGCAAAACGAACACAGTAAAATTAGATGAAGATAATTTTCTGTATTGGAAGATTCAAAGGTCCTTGATTGTGAAACTGCTTGAGACATTTGGAAGGTTCTCAATGCTCGTTTCTCCTCCCCCGCAATCTTTCTCAGGATTGGGTTCAGAATATGACTCCACAGTGAACGTGATTACGGAGAAAGATATCACCCCACCTCTACCGAAAGTGTACTCGCTGCTGTTGACTCAAGAAAGCATAATTGAGAGGAACTCCACAATAAATACAAATGGCTCCTTACCGTCTGTAAACTACACTGCCACTCAAGCTCCCAAGCAACAGCAACCAAATACCCAAGATAATAAAAAACGTAACAATGGAGGACAAAGAAATTCGAAGAACAATGCACCAGAAACAATCGAAGGAACTGCAACAATAATGGGAAACCACAGTGTCAATTATGTTGTCGTTTTGGCCATACTGTTGTTCGTTGCTACTTCAGGAGCCTCCAACCATGTTACAAGTGACCTCTCCAATCTGAATATTGGTGTTGATTACACTGGAGACAACAAAGTCCATGTAGGCAATGGTGCAGGTTTGGATGTCTTTCATATTGGTTCTTCCTCTCTTAAATCATCTTCTAATCCTAGCAATATTTTTCATTTTAAAAACCTGCTTCATGTTCCTCAAATAACAAAAAATCTCATAAGTGTTAGCCAATTCGCTAGAGATAATCAAGTGTTTTTTGAATTTCATCCTCACTGTTGTTTTGTGAAGGATACTCTAATTGGCCGAATTCTTCTCCAAGGCAAGGTGTCTGATGGACTGTATCAATTCTCATTGGAAAAGGTTGCATCCCAAGATTCTAAAGGTGGTTGCTCCTCTTCAAACTTCAAATCTCAAGTACTTCATACCTCTCTGTCTCCTTTTACCTATCGACCTATTCTTCGTCTTCAAACTGACGGAGGAGGTGAATTTCGTTCCTTTGCCACTGATAACTGCCCAAAAGATTATGCTGCTGAGCGACTGGAAGGAGCAAATTCTATGCTGCAGCAAAACTGGGAGCAGAAACTGCCACGTCACAGCTCGTTAGCCAACTTCATTAACCGACTTCTGTTGAGTTATTTTCGTGATAAAGGATCAAGGAGAGCCTTACACGTGTCCTAG

Protein sequence

MGSSSTESETLNPTQILKAINPGSKTNTVKLDEDNFLYWKIQRSLIVKLLETFGRFSMLVSPPPQSFSGLGSEYDSTVNVITEKDITPPLPKVYSLLLTQESIIERNSTINTNGSLPSVNYTATQAPKQQQPNTQDNKKRNNGGQRNSKNNAPETIEGTATIMGNHSVNYVVVLAILLFVATSGASNHVTSDLSNLNIGVDYTGDNKVHVGNGAGLDVFHIGSSSLKSSSNPSNIFHFKNLLHVPQITKNLISVSQFARDNQVFFEFHPHCCFVKDTLIGRILLQGKVSDGLYQFSLEKVASQDSKGGCSSSNFKSQVLHTSLSPFTYRPILRLQTDGGGEFRSFATDNCPKDYAAERLEGANSMLQQNWEQKLPRHSSLANFINRLLLSYFRDKGSRRALHVS

Homology

[Close]

BLAST of Lag0041553 vs. NCBI nr
Match: KAA0048297.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 165.2 bits (417), Expect = 1.1e-36
Identity = 116/318 (36.48%), Postives = 167/318 (52.52%), Query Frame = 0


Query: 68  SGLGSEYDSTVNVITEKDITPPLPKVYSLLLTQESIIERNSTINTNGSLPSVNYT--ATQ 127
           +GLGS+Y S ++VI+ +  +P + +V SLLLTQES  +  S + +  +LPSVN     T+
Sbjct: 188 AGLGSDYQSMISVISARTDSPSVQEVMSLLLTQES--QNESKLISETALPSVNIVTQTTE 247

Query: 128 APKQQQPNTQDNKKRNN------GGQRNSKNN---------------------------- 187
              +    T  N   NN      GG+ N ++N                            
Sbjct: 248 KGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRGRRGNRNKPQCQICAKLGYSADRCFFR 307

Query: 188 ----------APETIEGTATIMGNHSVNYVVVLAILLFVAT-----SGASNHVTSDLSNL 247
                     +P +   + T M NH     +V A+ L + +     SGA+NH+T  LSNL
Sbjct: 308 YTPRSNSSGYSPNSHNTSYTNMNNHPQMSAMVAALDLNIDSNWYPDSGATNHLTHSLSNL 367

Query: 248 NIGVDYTGDNKVHVGNGAGLDVFHIGSSSLKSSSNPSNIFHFKNLLHVPQITKNLISVSQ 307
           +IG +Y G N+++  NG+GL + H GS S  SS+ P   F   NLL VP ITKNLISVSQ
Sbjct: 368 SIGSEYGGGNQIYAANGSGLPITHYGSMSFNSSTLPFKSFTLNNLLQVPSITKNLISVSQ 427

Query: 308 FARDNQVFFEFHPHCCFVKDTLIGRILLQGKVSDGLYQFSLEKVASQDSKGGCSSSNFKS 335
           FA+DN VFFEFHP  C+VKD   G++LLQG ++DGLY+F++E      S      SN  +
Sbjct: 428 FAKDNHVFFEFHPTLCYVKDLDTGQVLLQGLLNDGLYKFTIE-----PSHKRLHHSNSNT 487

[Close]

BLAST of Lag0041553 vs. NCBI nr
Match: TYK10642.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 165.2 bits (417), Expect = 1.1e-36
Identity = 116/318 (36.48%), Postives = 167/318 (52.52%), Query Frame = 0


Query: 68  SGLGSEYDSTVNVITEKDITPPLPKVYSLLLTQESIIERNSTINTNGSLPSVNYT--ATQ 127
           +GLGS+Y S ++VI+ +  +P + +V SLLLTQES  +  S + +  +LPSVN     T+
Sbjct: 188 AGLGSDYQSMISVISARTDSPSVQEVMSLLLTQES--QNESKLISETALPSVNIVTQTTE 247

Query: 128 APKQQQPNTQDNKKRNN------GGQRNSKNN---------------------------- 187
              +    T  N   NN      GG+ N ++N                            
Sbjct: 248 KGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRGRRGNRNKPQCQICAKLGYSADRCFFR 307

Query: 188 ----------APETIEGTATIMGNHSVNYVVVLAILLFVAT-----SGASNHVTSDLSNL 247
                     +P +   + T M NH     +V A+ L + +     SGA+NH+T  LSNL
Sbjct: 308 YTPRSNSSGYSPNSHNTSYTNMNNHPQMSAMVAALDLNIDSNWYPDSGATNHLTHSLSNL 367

Query: 248 NIGVDYTGDNKVHVGNGAGLDVFHIGSSSLKSSSNPSNIFHFKNLLHVPQITKNLISVSQ 307
           +IG +Y G N+++  NG+GL + H GS S  SS+ P   F   NLL VP ITKNLISVSQ
Sbjct: 368 SIGSEYGGGNQIYAANGSGLPITHYGSMSFNSSTLPFKSFTLNNLLQVPSITKNLISVSQ 427

Query: 308 FARDNQVFFEFHPHCCFVKDTLIGRILLQGKVSDGLYQFSLEKVASQDSKGGCSSSNFKS 335
           FA+DN VFFEFHP  C+VKD   G++LLQG ++DGLY+F++E      S      SN  +
Sbjct: 428 FAKDNHVFFEFHPTLCYVKDLDTGQVLLQGLLNDGLYKFTIE-----PSHKRLHHSNSNT 487

[Close]

BLAST of Lag0041553 vs. NCBI nr
Match: KAA0068024.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK18104.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 9.0e-34
Identity = 116/311 (37.30%), Postives = 161/311 (51.77%), Query Frame = 0


Query: 1   MGSSSTESETLNPTQILKAINPGSKTNTVKLDEDNFLYWKIQRSLIVKLLETFGRFSMLV 60
           +G  +TE+     + I +    G+K + VKL++DNFL WK Q   I+  LE +   + L 
Sbjct: 8   LGVENTEAS----SPINQIFGSGNKISLVKLNDDNFLLWKFQ---ILTALEAYDMENFLE 67

Query: 61  S---PPPQSFSGLGSEYDSTVNVITEKDITPPLPKVYSLLLTQESIIERNSTINTNGSLP 120
           S   PP +  +  GS   S            P P+       +ES  +  S + +  +LP
Sbjct: 68  SESEPPTKYLTSTGSSSTSATRT--------PNPEY------KES--QNESKLISETALP 127

Query: 121 SVNYT--ATQAPKQQQPNTQDNKKRNNG--GQRNSKNNAPETIEGTATIMGNHSVNYVVV 180
           SVN     T+   +    T  N   NN    QR  + N      G     GN +     +
Sbjct: 128 SVNIVTQTTEKGAESYIRTSQNNYHNNHSYNQRGGRGNGRSNSGG----RGNRNKPQCQI 187

Query: 181 LAILLFVA------TSGASNHVTSDLSNLNIGVDYTGDNKVHVGNGAGLDVFHIGSSSLK 240
              L   A       SGA+NH+T  LSNL+ G +Y G N+++  NG+GL + H GS S  
Sbjct: 188 CTKLGHSADSNWYPDSGATNHLTHSLSNLSTGSEYGGGNQIYTANGSGLPITHYGSMSFN 247

Query: 241 SSSNPSNIFHFKNLLHVPQITKNLISVSQFARDNQVFFEFHPHCCFVKDTLIGRILLQGK 299
           SS+ P   F  KNLLHVP ITKNLISVS FA+DN VFFEFHP  C+VKD   G++LLQG 
Sbjct: 248 SSTLPFKSFTLKNLLHVPSITKNLISVSLFAKDNHVFFEFHPTLCYVKDLDNGQVLLQGL 291

[Close]

BLAST of Lag0041553 vs. NCBI nr
Match: RVW60229.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 149.4 bits (376), Expect = 6.5e-32
Identity = 75/136 (55.15%), Postives = 94/136 (69.12%), Query Frame = 0


Query: 183 SGASNHVTSDLSNLNIGVDYTGDNKVHVGNGAGLDVFHIGSSSLKSSSNPSNIFHFKNLL 242
           SGA+NHVT DL NLN G +Y G++K+H+GNG GL + HIG S   SSS+P+ +   KN+L
Sbjct: 498 SGATNHVTHDLGNLNSGAEYNGNSKIHMGNGTGLKISHIGLSVFPSSSSPNKVLFLKNIL 557

Query: 243 HVPQITKNLISVSQFARDNQVFFEFHPHCCFVKDTLIGRILLQGKVSDGLYQFSLEKVAS 302
            VP I KNL+SVSQFARDN V+FEFHP  CFVKD     +LLQG +  GLYQF+L K   
Sbjct: 558 RVPAIKKNLLSVSQFARDNNVYFEFHPKVCFVKDKSNHSLLLQGNLHKGLYQFNLSKKLF 617

Query: 303 QDSKGGCSSSNFKSQV 319
                G S SN K+++
Sbjct: 618 -GKASGLSLSNDKNEL 632

[Close]

BLAST of Lag0041553 vs. NCBI nr
Match: RVW44519.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 149.4 bits (376), Expect = 6.5e-32
Identity = 75/136 (55.15%), Postives = 94/136 (69.12%), Query Frame = 0


Query: 183 SGASNHVTSDLSNLNIGVDYTGDNKVHVGNGAGLDVFHIGSSSLKSSSNPSNIFHFKNLL 242
           SGA+NHVT DL NLN G +Y G++K+H+GNG GL + HIG S   SSS+P+ +   KN+L
Sbjct: 362 SGATNHVTHDLGNLNSGAEYNGNSKIHMGNGTGLKISHIGLSVFPSSSSPNKVLFLKNIL 421

Query: 243 HVPQITKNLISVSQFARDNQVFFEFHPHCCFVKDTLIGRILLQGKVSDGLYQFSLEKVAS 302
            VP I KNL+SVSQFARDN V+FEFHP  CFVKD     +LLQG +  GLYQF+L K   
Sbjct: 422 RVPAIKKNLLSVSQFARDNNVYFEFHPKVCFVKDKSNHSLLLQGNLHKGLYQFNLSKKLF 481

Query: 303 QDSKGGCSSSNFKSQV 319
                G S SN K+++
Sbjct: 482 -GKASGLSLSNDKNEL 496

[Close]

BLAST of Lag0041553 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.4e-16
Identity = 81/274 (29.56%), Postives = 118/274 (43.07%), Query Frame = 0


Query: 70  LGSEYDSTVNVITEKDITPPLPKVYSLLLTQES-IIERNSTINTNGSLPSVNYTATQAPK 129
           L  EY   ++ I  KD  P L +++  LL  ES I+  +S      +  +V++  T    
Sbjct: 176 LPEEYKPVIDQIAAKDTPPTLTEIHERLLNHESKILAVSSATVIPITANAVSHRNTTTTN 235

Query: 130 QQQPNTQDNKKRNNGGQRNSK------------NNAPETIEGTATIMG--NHSVNYVVVL 189
                 ++N+  N     NSK            NN  +   G   I G   HS      L
Sbjct: 236 NNNNGNRNNRYDNRNNNNNSKPWQQSSTNFHPNNNQSKPYLGKCQICGVQGHSAKRCSQL 295

Query: 190 AILL-------------------------------FVATSGASNHVTSDLSNLNIGVDYT 249
              L                               ++  SGA++H+TSD +NL++   YT
Sbjct: 296 QHFLSSVNSQQPPSPFTPWQPRANLALGSPYSSNNWLLDSGATHHITSDFNNLSLHQPYT 355

Query: 250 GDNKVHVGNGAGLDVFHIGSSSLKSSSNPSNIFHFKNLLHVPQITKNLISVSQFARDNQV 298
           G + V V +G+ + + H GS+SL + S P N+    N+L+VP I KNLISV +    N V
Sbjct: 356 GGDDVMVADGSTIPISHTGSTSLSTKSRPLNL---HNILYVPNIHKNLISVYRLCNANGV 415

[Close]

BLAST of Lag0041553 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.7e-14
Identity = 88/306 (28.76%), Postives = 136/306 (44.44%), Query Frame = 0


Query: 70  LGSEYDSTVNVITEKDITPPLPKVYSLLLTQES-IIERNSTINTNGSLPSVNYTATQAPK 129
           L  +Y   ++ I  KD  P L +++  L+ +ES ++  NS      +   V +  T   +
Sbjct: 157 LPDDYKPVIDQIAAKDTPPSLTEIHERLINRESKLLALNSAEVVPITANVVTHRNTNTNR 216

Query: 130 QQQPNTQDNKKRNNGGQRN-----------SKNNAPETIEGTATI--MGNHSVNYVVVL- 189
            Q  N  DN+  NN   R+           S N  P+   G   I  +  HS      L 
Sbjct: 217 NQN-NRGDNRNYNNNNNRSNSWQPSSSGSRSDNRQPKPYLGRCQICSVQGHSAKRCPQLH 276

Query: 190 ---------------------AILL---------FVATSGASNHVTSDLSNLNIGVDYTG 249
                                A L          ++  SGA++H+TSD +NL+    YTG
Sbjct: 277 QFQSTTNQQQSTSPFTPWQPRANLAVNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTG 336

Query: 250 DNKVHVGNGAGLDVFHIGSSSLKSSSNPSNIFHFKNLLHVPQITKNLISVSQFARDNQVF 309
            + V + +G+ + + H GS+SL +SS   ++     +L+VP I KNLISV +    N+V 
Sbjct: 337 GDDVMIADGSTIPITHTGSASLPTSSRSLDL---NKVLYVPNIHKNLISVYRLCNTNRVS 396

Query: 310 FEFHPHCCFVKDTLIGRILLQGKVSDGLYQF------SLEKVASQDSKGGCSSSNFKSQV 325
            EF P    VKD   G  LLQGK  D LY++      ++   AS  SK   + S++ S++
Sbjct: 397 VEFFPASFQVKDLNTGVPLLQGKTKDELYEWPIASSQAVSMFASPCSK--ATHSSWHSRL 456

[Close]

BLAST of Lag0041553 vs. ExPASy TrEMBL
Match: A0A5A7U233 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00060 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 5.5e-37
Identity = 116/318 (36.48%), Postives = 167/318 (52.52%), Query Frame = 0


Query: 68  SGLGSEYDSTVNVITEKDITPPLPKVYSLLLTQESIIERNSTINTNGSLPSVNYT--ATQ 127
           +GLGS+Y S ++VI+ +  +P + +V SLLLTQES  +  S + +  +LPSVN     T+
Sbjct: 188 AGLGSDYQSMISVISARTDSPSVQEVMSLLLTQES--QNESKLISETALPSVNIVTQTTE 247

Query: 128 APKQQQPNTQDNKKRNN------GGQRNSKNN---------------------------- 187
              +    T  N   NN      GG+ N ++N                            
Sbjct: 248 KGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRGRRGNRNKPQCQICAKLGYSADRCFFR 307

Query: 188 ----------APETIEGTATIMGNHSVNYVVVLAILLFVAT-----SGASNHVTSDLSNL 247
                     +P +   + T M NH     +V A+ L + +     SGA+NH+T  LSNL
Sbjct: 308 YTPRSNSSGYSPNSHNTSYTNMNNHPQMSAMVAALDLNIDSNWYPDSGATNHLTHSLSNL 367

Query: 248 NIGVDYTGDNKVHVGNGAGLDVFHIGSSSLKSSSNPSNIFHFKNLLHVPQITKNLISVSQ 307
           +IG +Y G N+++  NG+GL + H GS S  SS+ P   F   NLL VP ITKNLISVSQ
Sbjct: 368 SIGSEYGGGNQIYAANGSGLPITHYGSMSFNSSTLPFKSFTLNNLLQVPSITKNLISVSQ 427

Query: 308 FARDNQVFFEFHPHCCFVKDTLIGRILLQGKVSDGLYQFSLEKVASQDSKGGCSSSNFKS 335
           FA+DN VFFEFHP  C+VKD   G++LLQG ++DGLY+F++E      S      SN  +
Sbjct: 428 FAKDNHVFFEFHPTLCYVKDLDTGQVLLQGLLNDGLYKFTIE-----PSHKRLHHSNSNT 487

[Close]

BLAST of Lag0041553 vs. ExPASy TrEMBL
Match: A0A5D3CH97 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00040 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 5.5e-37
Identity = 116/318 (36.48%), Postives = 167/318 (52.52%), Query Frame = 0


Query: 68  SGLGSEYDSTVNVITEKDITPPLPKVYSLLLTQESIIERNSTINTNGSLPSVNYT--ATQ 127
           +GLGS+Y S ++VI+ +  +P + +V SLLLTQES  +  S + +  +LPSVN     T+
Sbjct: 188 AGLGSDYQSMISVISARTDSPSVQEVMSLLLTQES--QNESKLISETALPSVNIVTQTTE 247

Query: 128 APKQQQPNTQDNKKRNN------GGQRNSKNN---------------------------- 187
              +    T  N   NN      GG+ N ++N                            
Sbjct: 248 KGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRGRRGNRNKPQCQICAKLGYSADRCFFR 307

Query: 188 ----------APETIEGTATIMGNHSVNYVVVLAILLFVAT-----SGASNHVTSDLSNL 247
                     +P +   + T M NH     +V A+ L + +     SGA+NH+T  LSNL
Sbjct: 308 YTPRSNSSGYSPNSHNTSYTNMNNHPQMSAMVAALDLNIDSNWYPDSGATNHLTHSLSNL 367

Query: 248 NIGVDYTGDNKVHVGNGAGLDVFHIGSSSLKSSSNPSNIFHFKNLLHVPQITKNLISVSQ 307
           +IG +Y G N+++  NG+GL + H GS S  SS+ P   F   NLL VP ITKNLISVSQ
Sbjct: 368 SIGSEYGGGNQIYAANGSGLPITHYGSMSFNSSTLPFKSFTLNNLLQVPSITKNLISVSQ 427

Query: 308 FARDNQVFFEFHPHCCFVKDTLIGRILLQGKVSDGLYQFSLEKVASQDSKGGCSSSNFKS 335
           FA+DN VFFEFHP  C+VKD   G++LLQG ++DGLY+F++E      S      SN  +
Sbjct: 428 FAKDNHVFFEFHPTLCYVKDLDTGQVLLQGLLNDGLYKFTIE-----PSHKRLHHSNSNT 487

[Close]

BLAST of Lag0041553 vs. ExPASy TrEMBL
Match: A0A5D3D3G2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00260 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.4e-34
Identity = 116/311 (37.30%), Postives = 161/311 (51.77%), Query Frame = 0


Query: 1   MGSSSTESETLNPTQILKAINPGSKTNTVKLDEDNFLYWKIQRSLIVKLLETFGRFSMLV 60
           +G  +TE+     + I +    G+K + VKL++DNFL WK Q   I+  LE +   + L 
Sbjct: 8   LGVENTEAS----SPINQIFGSGNKISLVKLNDDNFLLWKFQ---ILTALEAYDMENFLE 67

Query: 61  S---PPPQSFSGLGSEYDSTVNVITEKDITPPLPKVYSLLLTQESIIERNSTINTNGSLP 120
           S   PP +  +  GS   S            P P+       +ES  +  S + +  +LP
Sbjct: 68  SESEPPTKYLTSTGSSSTSATRT--------PNPEY------KES--QNESKLISETALP 127

Query: 121 SVNYT--ATQAPKQQQPNTQDNKKRNNG--GQRNSKNNAPETIEGTATIMGNHSVNYVVV 180
           SVN     T+   +    T  N   NN    QR  + N      G     GN +     +
Sbjct: 128 SVNIVTQTTEKGAESYIRTSQNNYHNNHSYNQRGGRGNGRSNSGG----RGNRNKPQCQI 187

Query: 181 LAILLFVA------TSGASNHVTSDLSNLNIGVDYTGDNKVHVGNGAGLDVFHIGSSSLK 240
              L   A       SGA+NH+T  LSNL+ G +Y G N+++  NG+GL + H GS S  
Sbjct: 188 CTKLGHSADSNWYPDSGATNHLTHSLSNLSTGSEYGGGNQIYTANGSGLPITHYGSMSFN 247

Query: 241 SSSNPSNIFHFKNLLHVPQITKNLISVSQFARDNQVFFEFHPHCCFVKDTLIGRILLQGK 299
           SS+ P   F  KNLLHVP ITKNLISVS FA+DN VFFEFHP  C+VKD   G++LLQG 
Sbjct: 248 SSTLPFKSFTLKNLLHVPSITKNLISVSLFAKDNHVFFEFHPTLCYVKDLDNGQVLLQGL 291

[Close]

BLAST of Lag0041553 vs. ExPASy TrEMBL
Match: A0A438FJP6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1134 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.1e-32
Identity = 75/136 (55.15%), Postives = 94/136 (69.12%), Query Frame = 0


Query: 183 SGASNHVTSDLSNLNIGVDYTGDNKVHVGNGAGLDVFHIGSSSLKSSSNPSNIFHFKNLL 242
           SGA+NHVT DL NLN G +Y G++K+H+GNG GL + HIG S   SSS+P+ +   KN+L
Sbjct: 498 SGATNHVTHDLGNLNSGAEYNGNSKIHMGNGTGLKISHIGLSVFPSSSSPNKVLFLKNIL 557

Query: 243 HVPQITKNLISVSQFARDNQVFFEFHPHCCFVKDTLIGRILLQGKVSDGLYQFSLEKVAS 302
            VP I KNL+SVSQFARDN V+FEFHP  CFVKD     +LLQG +  GLYQF+L K   
Sbjct: 558 RVPAIKKNLLSVSQFARDNNVYFEFHPKVCFVKDKSNHSLLLQGNLHKGLYQFNLSKKLF 617

Query: 303 QDSKGGCSSSNFKSQV 319
                G S SN K+++
Sbjct: 618 -GKASGLSLSNDKNEL 632

[Close]

BLAST of Lag0041553 vs. ExPASy TrEMBL
Match: A0A438EA49 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2917 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.1e-32
Identity = 75/136 (55.15%), Postives = 94/136 (69.12%), Query Frame = 0


Query: 183 SGASNHVTSDLSNLNIGVDYTGDNKVHVGNGAGLDVFHIGSSSLKSSSNPSNIFHFKNLL 242
           SGA+NHVT DL NLN G +Y G++K+H+GNG GL + HIG S   SSS+P+ +   KN+L
Sbjct: 362 SGATNHVTHDLGNLNSGAEYNGNSKIHMGNGTGLKISHIGLSVFPSSSSPNKVLFLKNIL 421

Query: 243 HVPQITKNLISVSQFARDNQVFFEFHPHCCFVKDTLIGRILLQGKVSDGLYQFSLEKVAS 302
            VP I KNL+SVSQFARDN V+FEFHP  CFVKD     +LLQG +  GLYQF+L K   
Sbjct: 422 RVPAIKKNLLSVSQFARDNNVYFEFHPKVCFVKDKSNHSLLLQGNLHKGLYQFNLSKKLF 481

Query: 303 QDSKGGCSSSNFKSQV 319
                G S SN K+++
Sbjct: 482 -GKASGLSLSNDKNEL 496

The following BLAST results are available for this feature:

BLAST of Lag0041553 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048297.1	1.1e-36	36.48	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK10642.1	1.1e-36	36.48	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0068024.1	9.0e-34	37.30	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
RVW60229.1	6.5e-32	55.15	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW44519.1	6.5e-32	55.15	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of Lag0041553 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	1.4e-16	29.56	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	3.7e-14	28.76	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of Lag0041553 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U233	5.5e-37	36.48	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CH97	5.5e-37	36.48	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3D3G2	4.4e-34	37.30	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A438FJP6	3.1e-32	55.15	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438EA49	3.1e-32	55.15	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]

BLAST of Lag0041553 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..153
None	No IPR available	PANTHER	PTHR34222:SF13	SERINE/THREONINE-PROTEIN KINASE DDB_G0278845-RELATED	coord: 68..204
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 68..204

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0041553.1	Lag0041553.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding