Lag0041508 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0041508
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionprotein BPS1, chloroplastic-like
Locationchr13: 19260121 .. 19265052 (+)
RNA-Seq ExpressionLag0041508
SyntenyLag0041508
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCCTTTTGTTTCATTCCTTCAACAAGCTCTGTTCCAAGCTCGACAATCACCACAACCGCCATGCATGTAAAGCTTCGTTCTCTGTTTCTCGTCTTCAGGTCTTCGAGGTCGAAGTCTCGTCTTGCTTGAATCAACTCTTGTTGTCGAGTTTCGATTTGAAATTGTTGTCGTTTCAATGGCTTATTCAGCTTGCGAAATTGGTTGTTGATCTGGAGTACCCCGTCGGGAAATGCGGAGCCGATTTGGTTGATGGGTATTTGAATTACAGTCTTAACTTGCTCAATCTTTTCAATTCCATCAGTTTTTCTCTATCCTAATTGGCGCAATCGCGACTTTCCCATTCTTACGCTCTGAGCCTAATTCAGAGCTCCCTTTTAATGGTGGTTGCCCATCTGAAATTTCGATTGTCCCGAAGACAAGTTTCAGAGGATTGGAAAACAAAGGAACTGTGAGAGATAAAAAGAAGGGTTGCTCCGGCAAGGAGTCGGCGATCGAGAAAAAGTAGAGGGAGAGAGTGGGTGATCGAAGGGATGGAGAGGTAGAGGGAGAAAGAAGATGGGAGAAAGAAGAGAGAGAAGAATAATGAAATATGAGATGGACCCAATTTTTACATTTATGATAGATTAGGGGTTTAATTTTAACATTCAAAGTTTAGGGGTCTAATTTTTACACTTTTTAAAGTTCGAGGGTTTAATTTTTAAATTTGAAACTTTGAGGGTTTAATTGTTACAAACACCATACTTCAGGGGTGGTTTTTGCAATTTGCCCTTATTTTTTTAATTAATTAATTAATTAATTTTGATCTCAATTAAATTATAATTATTTTGATAAATTTTCACATTGTTAACTTTTGATGGAAAATATTCGTCAATTGTTCACTCCATTTAAATGGTCAATTTCTTAAAATTAAAGATAAAATTCTTAAATCTTCCCATGGAAATAATGTAGTTTTCAAATTATCTAATTATTTATATATATAATTCAAATGTTCAAACCATCTAATTCAAATATATCTAATTTTCTAAATAATTAACAATAAGATTTTGAATTTATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAAACGGGGCGAGGAATGAGGATGAAGAATAAATTCTCCTTCTCTGTCCCCATTCTCGTTTAGCTTGTGGGAAAATTTTTCCTCCTATTCCCTCCCTACTTCTTGCCTAGATGGGGATTCCTTGTCCTATTAGGGGCGGCTCTCCACGAAGCCTTTTCCCATGTGGAACAAATGGATATTTCTAATTAGATATTAATTGAATTTAAAAAAAAAAAAATTAGGAATGATAGGTTTTTGAAAGAAAAAAAATAGGAAAAGCAGGGTGATTTTATTTATTTATTGCAATTAGGTGGATTCAAAGACGTTTGACCGTTTAACGCTCGTGGTTGGGAAATAGAGTTAGAATCCACCTCTTGTATAGGTGGATCCTAATTGATTTATTAAAACAAAAAAAAAGTAGATTTATGGTATTTATCTATATTAATTTCAATTTTTTTCGAAGAAAATTGAAAAAAAAAAACTATGAAAATATGTGTATTAAATTAAAAAGTTGTTTATAATAATAATATAATTCAAAATAAAATATATAAATAAAATATGAACTTTCTACATTAAATTAAATTGTTGGTATTTACTCATATTAATTTTAATTTTTTAATGAGAAAGTGAAAAAAAGGAAAAATCTGATGGAAAGAAAAAAGATAAAAAAAATAAATGTAGATAATCTGCACCTACTAAGGAGCAAACCCTAGAATGGATGAATAGAAGGGACAAGAATAAACCACTCTACCAATCCACCTTTTTGAATATATTAATGTGGACATCGTCTCTTGAAGAGACGGCCTACAATTTTTTTTTTTAAATTAGTGTCACATCTGCATGTCGCCTCTTCAAAAGACGACATGTGGACGCGTGGGTCTAGGTCATCTCTTCAAAAGACGACCTATATGTGAAAATTTAAAACAATTTTTTTTTTACAATATGTGGGGTATGACCTGTTGATCATCAATACAACTTTATGCCAGTTGAGCCATGCTCTTGTTGGAAAAATTTAAAACAACAATAATTTAATATTAAGTTTCAAAATAACTATATTTTAATAAAAAGTTTTTAAAAATACAATATTAATAAAAAAATGTCCCCTATTGGACAGGCGAAGTCTAATCGGTTTATTTTTGAAAAATAGTTAAAAGAATCTGCTGGTTGGACAGGCAAACTCCAAAACCATCAAAAATATATCTAACTGAAAAGGATCCATTAAGTTTTTATTTTGTGTTGCTCAAACTAGCCAAATTAACTAGTTTTGATGAATGTTGATGGTAACATTTTTTTTATTTGTTATAAGTTACCTCCTAACTAGGTCTTTTCAGGTACCGTCATTATTATTATTATTTAATTATTCTCGTCCATCATAGATTGTAAGGTTAAATTATTAAAAAATTCCGTGAACTATGGAGTTGGTTTCAATTATACTCCTAAACTTTCAAAAGTTTCATTTTAACTCTTAAAGTTTGAAGTTTGAAGTTTGTTTCAAAACGACCTTTGAAGGCTCTTTCCGTTAAATTAATGGATGGAAAAATGACGTGTTTGCATATGTATTATTGTTTATGTGTACAAATTTGAACACACACGTAGAAAAAACAATAAAAACACATGCAAGCACATCATTTTTCTTCCATAAATTTAACGGAAAATGTCTTCAATGGTCGTTTTGAAATAGACTTCAAACTTCAAGGGTCAAAATGAAACTTTGCAATAAAGACAAGAAATCATCTCGCTTTTCCTTTTTTTTTTTAATGTAATTAGAATGTAATTTACTCATCAATAGTGAGATATCATAAAATTTAATGATTAAATATCTTTTTTTAGTACAAACATAAACAGAACCAAACAAAAGGCATTAAATGTGTTGAATGGGTAAGAATGTGAATCCTAGTGGAAGCCTAAGGACCCGTCTCACAATTTAATTTCGTTCTAAAAGAACTAGTACATTGACAAAAATAAACAGAGAACTATTCTACAGTTATTTCATGGATTAAGCATGCTAATTGGTTTGTTGTAAAAAATCTACAACAAGAGATTGAATCACTTACTCTCGTTGATGACTCAGGAATTTACAACAAATTGGTTTCCTCCCTTTGGTCAAACTCACGATCATAGTAACAACACCTTTGGACCGAAAGATACAGGACACCATCAAAATGGACTTCACCATTATTCTCTGAGATCTTGAATTGGTTTGTGGGAACCGTTCTTGAACAGTAGAGGGAAATCTTGAAATCTCAACACAGATAGGATTTTTTCTATGTAGTTGAGGGAAAATGAAAGAGTAAAGCTTGAGAGAATTTCTGTGAATTTCAGTTTCTGTGTACCAGAGAGTGAGAGAGCCCTCTTCTATCATACAAAATAAGGGAGGGAAGTTACGTACGTGTAATGACTGGACAATTTAGAGGGTGTCAAATTCTCCAACGTCCGTGCCAAATAAATTTATAATTCCACGGACATTAAACTACTTTGCAGCAGTAGTGGCTGGGGTTGATCACAGGGAACGATCAATTTATTTCTAAATTCTTTTATGCTTATAAGTAGTCGGGGGGGGGGGGGAGATTTAAATAAATTGCAGAAAAATAAATTGCATAAAATAAAGACGGGCAGGTTAATCGTACCACGAGGATCATTGTAATCGGAGACGTTCGGGTTTCAGTATGATTTATTTCACTCCTCGATTATCAAGAAAATTAATTTACCAATTGAAAGCCTAATCGACTAAACTGGAAAAGCTAGCAAGCCATAATATCTCTAAATTACTAAGTCTGACCAATGCATCGAGACTAGTCCTAACCGATTAATAAGCTAATTTTGCACATCAACTACTAATCGATTGCATTAAGAACGATGATGATTAGGATGCTCTAAGTTGACTAGGAAAAGCCTAAGTTAACATCAAACACATATTTAGACTCTAGATCTTTCATGTCATTCGCTAAACTTGGGATAACACGCCAAATCACTACATGCTTAGACCTATTCGCTACTTTAATTAGCATATTAATTTAACAAGTTGTGGCGAGGTTGTCAATCTCTAGTAACATTGCTAAATTTATGAACATTGGACAATATAGTAAATTATGCAAGAAGGATTAGAAATCTCATGAAATAAAAATCATACTTACAACCGAGGTCTCGATTACAACAATCCAAGCTTAGACGACCATAGATGAGCCTAATCTAAGCCCACAAGACTTGATTAACCCACCCAAAACTGACCTAAACTTGGGAGAACTGAAAAGTAGAGAGAAAAACGAGCAGAACGGCGAAAGAATCACACACACACACACACACACACTCTCTCTCTCTCTTTCTCCTCTCTCTTCTTCTTCTTCTTCCCAGTCGCTGGTGATTGCCTCCCGCCAGCCGACCATCGATCGTCGTCGCCGACGCCAATTTCTTTTTTATTTTTTTTTCTTTTTCCCTTTCTTTCTTCTTCTTTCTTTCTTCTCCTTTCCCTTCTTTTTTATCTAAATTTTCTTTTTCCCCCCATTTCAGATATCTCTCTTTCTCCCCGTGCCAGCCACCCTCGCCCCACCATCGTGCCTTCATCGGTTTAGATCTGCCTAGCCACTGCGTCCTTCGTGAAAAGGGTCTAAAATGAAGGGGCTTTCTCCTTCGTTTTCAGATCAGATCTGGGCGGTGGCGCCAGTGCAATTGCGATAGATCTGGGTAAAATTACATGGAGATGTATAGTTGCGGTGAATCGTGGTAAAACGGCGGAGAGAAAAACTACCGAGAAAGAGAGGGTTGTGCGAAGGGAGAGGCAACATGGCAGTTTTCGTTTGCAGTGGCTGGGCGACGACGCAACTGGCGGTAAAGGCGAATGA

mRNA sequence

ATGGTCCTTTTGTTTCATTCCTTCAACAAGCTCTGTTCCAAGCTCGACAATCACCACAACCGCCATGCATGTAAAGCTTCGTTCTCTGTTTCTCGTCTTCAGGTCTTCGAGGTCGAAGTCTCGTCTTGCTTGAATCAACTCTTGTTGTCGAGTTTCGATTTGAAATTGTTGTCGTTTCAATGGCTTATTCAGCTTGCGAAATTGGTTGTTGATCTGGAGTACCCCGTCGGGAAATGCGGAGCCGATTTGGTTGATGGATCAGATCTGGGCGGTGGCGCCAGTGCAATTGCGATAGATCTGGGTAAAATTACATGGAGATGTATAGTTGCGGTGAATCGTGGTAAAACGGCGGAGAGAAAAACTACCGAGAAAGAGAGGGTTGTGCGAAGGGAGAGGCAACATGGCAGTTTTCGTTTGCAGTGGCTGGGCGACGACGCAACTGGCGGTAAAGGCGAATGA

Coding sequence (CDS)

ATGGTCCTTTTGTTTCATTCCTTCAACAAGCTCTGTTCCAAGCTCGACAATCACCACAACCGCCATGCATGTAAAGCTTCGTTCTCTGTTTCTCGTCTTCAGGTCTTCGAGGTCGAAGTCTCGTCTTGCTTGAATCAACTCTTGTTGTCGAGTTTCGATTTGAAATTGTTGTCGTTTCAATGGCTTATTCAGCTTGCGAAATTGGTTGTTGATCTGGAGTACCCCGTCGGGAAATGCGGAGCCGATTTGGTTGATGGATCAGATCTGGGCGGTGGCGCCAGTGCAATTGCGATAGATCTGGGTAAAATTACATGGAGATGTATAGTTGCGGTGAATCGTGGTAAAACGGCGGAGAGAAAAACTACCGAGAAAGAGAGGGTTGTGCGAAGGGAGAGGCAACATGGCAGTTTTCGTTTGCAGTGGCTGGGCGACGACGCAACTGGCGGTAAAGGCGAATGA

Protein sequence

MVLLFHSFNKLCSKLDNHHNRHACKASFSVSRLQVFEVEVSSCLNQLLLSSFDLKLLSFQWLIQLAKLVVDLEYPVGKCGADLVDGSDLGGGASAIAIDLGKITWRCIVAVNRGKTAERKTTEKERVVRRERQHGSFRLQWLGDDATGGKGE
Homology
[Close]
BLAST of Lag0041508 vs. NCBI nr
Match: XP_038896303.1 (protein BPS1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 129.0 bits (323), Expect = 3.4e-26
Identity = 69/98 (70.41%), Postives = 76/98 (77.55%), Query Frame = 0 

Query: 1  MVLLFHSFNKLCSKLDNHHNRHACKASFSVSRLQVFEVEVSSCLNQLLLSSFDLKLLSFQ 60
          M LL  +FNKLCSKLDNHH+R  CK+SFSVSRLQ FE +VSSCLNQLLLS+ DLK LSF+
Sbjct: 1  MPLLLQTFNKLCSKLDNHHHRRGCKSSFSVSRLQAFEDDVSSCLNQLLLSTSDLKSLSFR 60

Query: 61 WLIQL------------AKLVVDLEYPVGKCGADLVDG 87
          WL+QL            AKLVVDLEYPVGK GADLVDG
Sbjct: 61 WLLQLLQGLIPSIHQAFAKLVVDLEYPVGKWGADLVDG 98

[Close]
BLAST of Lag0041508 vs. NCBI nr
Match: KAG6575710.1 (UPF0496 protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.8 bits (268), Expect = 8.1e-20
Identity = 61/97 (62.89%), Postives = 68/97 (70.10%), Query Frame = 0 

Query: 1  MVLLFHSFNKLCSKLDNHHNRHACKASFSVSRLQVFEVEVSSCLNQLLLSSFDLKLLSFQ 60
          M+LL  +FNKLCSKL + H RH CKAS SVS LQ  E +VSSCLNQ LLSS DL+LLSF 
Sbjct: 1  MLLLLQTFNKLCSKLHDRHGRHGCKASSSVSCLQAMEDDVSSCLNQFLLSSSDLELLSFS 60

Query: 61 WLIQL-----------AKLVVDLEYPVGKCGADLVDG 87
          WL QL           AKLV +LE+PVGK GA LVDG
Sbjct: 61 WLPQLLQVLPILHQAFAKLVFNLEHPVGKWGAHLVDG 97

[Close]
BLAST of Lag0041508 vs. NCBI nr
Match: KAG7025628.1 (Protein BPS1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 106.7 bits (265), Expect = 1.8e-19
Identity = 62/98 (63.27%), Postives = 69/98 (70.41%), Query Frame = 0 

Query: 1  MVLLFHSFNKLCSKLDN-HHNRHACKASFSVSRLQVFEVEVSSCLNQLLLSSFDLKLLSF 60
          M+LL  SFNK CSK  N HH+RH  +ASFSVS LQ F+ EVSSCLNQLLLSS D + LSF
Sbjct: 1  MLLLLQSFNKHCSKFYNHHHSRHGNRASFSVSCLQAFDAEVSSCLNQLLLSSSDSRTLSF 60

Query: 61 QWLIQL-----------AKLVVDLEYPVGKCGADLVDG 87
           WL+QL           AKLVVDL+ PV K GADLVDG
Sbjct: 61 HWLLQLLQALPVLHQAFAKLVVDLDCPVAKWGADLVDG 98

[Close]
BLAST of Lag0041508 vs. NCBI nr
Match: XP_022960422.1 (protein BPS1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 105.5 bits (262), Expect = 4.0e-19
Identity = 62/98 (63.27%), Postives = 68/98 (69.39%), Query Frame = 0 

Query: 1  MVLLFHSFNKLCSKLDN-HHNRHACKASFSVSRLQVFEVEVSSCLNQLLLSSFDLKLLSF 60
          M+LL  SFNK CSK  N HH+RH  +ASFSVS LQ F+ EVSSCLNQLLLSS D   LSF
Sbjct: 1  MLLLLQSFNKHCSKFYNHHHSRHGNRASFSVSCLQAFDAEVSSCLNQLLLSSSDSTTLSF 60

Query: 61 QWLIQL-----------AKLVVDLEYPVGKCGADLVDG 87
           WL+QL           AKLVVDL+ PV K GADLVDG
Sbjct: 61 HWLLQLLQALPVLHQAFAKLVVDLDCPVAKWGADLVDG 98

[Close]
BLAST of Lag0041508 vs. NCBI nr
Match: KAG6593278.1 (Protein BPS1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105.5 bits (262), Expect = 4.0e-19
Identity = 62/98 (63.27%), Postives = 68/98 (69.39%), Query Frame = 0 

Query: 1  MVLLFHSFNKLCSKLDN-HHNRHACKASFSVSRLQVFEVEVSSCLNQLLLSSFDLKLLSF 60
          M+LL  SFNK CSK  N HH+RH  +ASFSVS LQ F+ EVSSCLNQLLLSS D   LSF
Sbjct: 1  MLLLLQSFNKHCSKFYNHHHSRHGNRASFSVSCLQAFDAEVSSCLNQLLLSSSDSTTLSF 60

Query: 61 QWLIQL-----------AKLVVDLEYPVGKCGADLVDG 87
           WL+QL           AKLVVDL+ PV K GADLVDG
Sbjct: 61 HWLLQLLQALPVLHQAFAKLVVDLDCPVAKWGADLVDG 98

The following BLAST results are available for this feature:
BLAST of Lag0041508 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038896303.13.4e-2670.41protein BPS1, chloroplastic-like [Benincasa hispida][more]
KAG6575710.18.1e-2062.89UPF0496 protein 4, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7025628.11.8e-1963.27Protein BPS1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma... [more]
XP_022960422.14.0e-1963.27protein BPS1, chloroplastic-like [Cucurbita moschata][more]
KAG6593278.14.0e-1963.27Protein BPS1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Lag0041508 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0041508.1Lag0041508.1mRNA