Lag0041489 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0041489
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionBEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein .
Locationchr13: 18838570 .. 18838887 (+)
RNA-Seq ExpressionLag0041489
SyntenyLag0041489
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCGAGGAGGACTTGGATGGGTTGTTCGTGACTCAGACGGATCCATGGTCTGCTTCGGGATGCATCAAATTGACAAGAAATGGCCGATCAAAATTCTAGAAGCCATGGCTTTACGGGAAGGAATCAAGCAAATCGTGGATTCCTGCAACAGCAATGAGATCTCTATTGAAATTGAGTCCGATTCGCTGGAAATTATAAATATTCTTACCGGCGTTGCAGAGGACCTCACGGAGGTGAAATTTATCACCGATCAGATTCTTGCTATGGCTGATTCTTCGCCTGGCATGCGCTTCCATCACTGTAGTAGATTTTGA

mRNA sequence

ATGAATCGAGGAGGACTTGGATGGGTTGTTCGTGACTCAGACGGATCCATGGTCTGCTTCGGGATGCATCAAATTGACAAGAAATGGCCGATCAAAATTCTAGAAGCCATGGCTTTACGGGAAGGAATCAAGCAAATCGTGGATTCCTGCAACAGCAATGAGATCTCTATTGAAATTGAGTCCGATTCGCTGGAAATTATAAATATTCTTACCGGCGTTGCAGAGGACCTCACGGAGGTGAAATTTATCACCGATCAGATTCTTGCTATGGCTGATTCTTCGCCTGGCATGCGCTTCCATCACTGTAGTAGATTTTGA

Coding sequence (CDS)

ATGAATCGAGGAGGACTTGGATGGGTTGTTCGTGACTCAGACGGATCCATGGTCTGCTTCGGGATGCATCAAATTGACAAGAAATGGCCGATCAAAATTCTAGAAGCCATGGCTTTACGGGAAGGAATCAAGCAAATCGTGGATTCCTGCAACAGCAATGAGATCTCTATTGAAATTGAGTCCGATTCGCTGGAAATTATAAATATTCTTACCGGCGTTGCAGAGGACCTCACGGAGGTGAAATTTATCACCGATCAGATTCTTGCTATGGCTGATTCTTCGCCTGGCATGCGCTTCCATCACTGTAGTAGATTTTGA

Protein sequence

MNRGGLGWVVRDSDGSMVCFGMHQIDKKWPIKILEAMALREGIKQIVDSCNSNEISIEIESDSLEIINILTGVAEDLTEVKFITDQILAMADSSPGMRFHHCSRF
Homology
BLAST of Lag0041489 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 62.4 bits (150), Expect = 2.7e-06
Identity = 34/104 (32.69%), Postives = 60/104 (57.69%), Query Frame = 0

Query: 2   NRGGLGWVVRDSDGSMVCFGMHQIDKKWPIKILEAMALREGIKQIVDSCNSNEI-SIEIE 61
           +RGG+GW++R  DG +V  G   ++    +K+LEA A+ EG++ +    N   +  + IE
Sbjct: 92  HRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLT---NLGVLRPLHIE 151

Query: 62  SDSLEIINILTGVAEDLTEVKFITDQILAMADSSPGMRFHHCSR 105
           +DS E+ ++L    EDLT+  ++ ++IL + DS   + F    R
Sbjct: 152 TDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAFAKVGR 192

BLAST of Lag0041489 vs. NCBI nr
Match: XP_022148737.1 (uncharacterized protein LOC111017329 [Momordica charantia])

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-05
Identity = 33/101 (32.67%), Postives = 57/101 (56.44%), Query Frame = 0

Query: 4   GGLGWVVRDSDGSMVCFGMHQIDKKWPIKILEAMALREGIKQIVDSCNSNEISIEIESDS 63
           GGLGW++R+    +   G   I     I  LE MA+  GI+ +V   +S+ +S+ IES+S
Sbjct: 28  GGLGWIIRNEKREIKKAGGQTITDARDITYLELMAIWLGIEAVV---SSSSVSLIIESES 87

Query: 64  LEIINILTGVAEDLTEVKFITDQILAMADSSPGMRFHHCSR 105
           LE I+++ G+ +++TE+ ++   I    + +   RF H  R
Sbjct: 88  LEAIHLIQGIQQNVTEILWLVQDIKNFGERARLKRFQHVQR 125

BLAST of Lag0041489 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 58.5 bits (140), Expect = 3.9e-05
Identity = 35/104 (33.65%), Postives = 55/104 (52.88%), Query Frame = 0

Query: 2   NRGGLGWVVRDSDGSMVCFGMHQIDKKWPIKILEAMALREGIKQI-VDSCNSNEISIEIE 61
           N GG+GW++RD  G ++      I  +  I  LE MA+ EG++ I  + C      I +E
Sbjct: 100 NTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAICEGLRAIRQEHCR----PIHLE 159

Query: 62  SDSLEIINILTGVAEDLTEVKFITDQILAMADSSPGMRFHHCSR 105
           SDSLE I++L    +D TE+ ++ ++I  M      +   H SR
Sbjct: 160 SDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDMEIVSMRHISR 199

BLAST of Lag0041489 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 57.8 bits (138), Expect = 6.7e-05
Identity = 35/108 (32.41%), Postives = 57/108 (52.78%), Query Frame = 0

Query: 2   NRGGLGWVVRDSDGSMVCFGMHQIDKKWPIKILEAMALREGIKQI-VDSCNSNEIS---- 61
           N GG+GW++RD  G ++      I  +  I  LE MA+ EG++ I  + C   +      
Sbjct: 100 NTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRP 159

Query: 62  IEIESDSLEIINILTGVAEDLTEVKFITDQILAMADSSPGMRFHHCSR 105
           I +ESDSLE I++L    +D TE+ ++ ++I  M +    +   H SR
Sbjct: 160 IHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMKIVSMRHISR 207

BLAST of Lag0041489 vs. NCBI nr
Match: XP_021753633.1 (uncharacterized protein LOC110719026 [Chenopodium quinoa])

HSP 1 Score: 57.8 bits (138), Expect = 6.7e-05
Identity = 33/100 (33.00%), Postives = 51/100 (51.00%), Query Frame = 0

Query: 5   GLGWVVRDSDGSMVCFGMHQIDKKWPIKILEAMALREGIKQIVDSCNSNEISIEIESDSL 64
           GLG VVRD  G +V  G+ QI   W ++I EA A+  G++    +       + +ESD L
Sbjct: 178 GLGAVVRDEVGIVVAVGVQQIKASWEVRIAEAKAIEWGLRV---AAGLGVRDLVVESDCL 237

Query: 65  EIINILTGVAEDLTEVKFITDQILAMADSSPGMRFHHCSR 105
           ++I  L     DL+E+  I D IL +  S   + + +  R
Sbjct: 238 QVIQALKNKTADLSELSLIIDDILLLCSSFDNVIWSYVKR 274

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155262.12.7e-0632.69uncharacterized protein LOC111022403 [Momordica charantia][more]
XP_022148737.11.3e-0532.67uncharacterized protein LOC111017329 [Momordica charantia][more]
XP_022143535.13.9e-0533.65uncharacterized protein LOC111013412 [Momordica charantia][more]
XP_022156777.16.7e-0532.41uncharacterized protein LOC111023608 [Momordica charantia][more]
XP_021753633.16.7e-0533.00uncharacterized protein LOC110719026 [Chenopodium quinoa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 2..104
e-value: 1.4E-13
score: 50.7
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..104
e-value: 8.4E-7
score: 31.0
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 3..103

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0041489.1Lag0041489.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity