Lag0041386 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0041386
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	protein FLX-like 3
Location	chr13: 16930979 .. 16931491 (-)
RNA-Seq Expression	Lag0041386
Synteny	Lag0041386

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGGGAGAAATCGCTCATCACGCCACATTGATGGTTACCGAGTTTCCCGTGATGTCCCTAGACCCTACATAGACCGAGTGCCAGCACCCCTGCCTATTCATCCTGCAGCTTTGGAGGAGGAACTTGAATTGCAAAGCGCGGCTGGGTTAAAATTAAGTTTGGTAAATAGAAAAACGCGGCTGAAATCGAGGGGAAGCAAAAGTTTCTCCAGCGCGGCTGGGACGGTGGTGTGTTTGTGTTAGAAGTTAGAAGAAGAAAAATAAATAAAAAAGAAAAAAAGAAAAATAGAGTGGTTTGGGTTAGCGTTTGCCTACAAACACGAGAGAGATAGATCGTTGGTTTCTTGCAACAATGGTAGCTAGTTGGTTTTAACCTTCTGTTATACCTTTATACGTGTCGAGGGTTATGGGATCTTGAACAGAAGTCCTGAAATGAGATATGCAGGTGGTGCATATGGTAATAACTATGGTAGTTCTTGGGCACCATATGAGAAGCGTAGCCGACGTTAA

mRNA sequence

ATGGCAGGGAGAAATCGCTCATCACGCCACATTGATGGTTACCGAGTTTCCCGTGATGTCCCTAGACCCTACATAGACCGAGTGCCAGCACCCCTGCCTATTCATCCTGCAGCTTTGGAGGAGGAACTTGAATTGCAAAGCGCGGCTGGGTTAAAATTAAGTTTGGGTTATGGGATCTTGAACAGAAGTCCTGAAATGAGATATGCAGGTGGTGCATATGGTAATAACTATGGTAGTTCTTGGGCACCATATGAGAAGCGTAGCCGACGTTAA

Coding sequence (CDS)

ATGGCAGGGAGAAATCGCTCATCACGCCACATTGATGGTTACCGAGTTTCCCGTGATGTCCCTAGACCCTACATAGACCGAGTGCCAGCACCCCTGCCTATTCATCCTGCAGCTTTGGAGGAGGAACTTGAATTGCAAAGCGCGGCTGGGTTAAAATTAAGTTTGGGTTATGGGATCTTGAACAGAAGTCCTGAAATGAGATATGCAGGTGGTGCATATGGTAATAACTATGGTAGTTCTTGGGCACCATATGAGAAGCGTAGCCGACGTTAA

Protein sequence

MAGRNRSSRHIDGYRVSRDVPRPYIDRVPAPLPIHPAALEEELELQSAAGLKLSLGYGILNRSPEMRYAGGAYGNNYGSSWAPYEKRSRR

Homology

[Close]

BLAST of Lag0041386 vs. NCBI nr
Match: XP_022158741.1 (protein FLX-like 3 [Momordica charantia])

HSP 1 Score: 98.2 bits (243), Expect = 3.8e-17
Identity = 85/261 (32.57%), Postives = 86/261 (32.95%), Query Frame = 0


Query: 1   MAGRNRSSRHIDGYRVSRDVPRPYIDRVPAPLPIHPAALEEELELQ-------------- 60
           MAGRNRSSRHIDGYRVSRD PRPYIDRVPAPLPIHPAALEEELELQ              
Sbjct: 1   MAGRNRSSRHIDGYRVSRDAPRPYIDRVPAPLPIHPAALEEELELQRREMGRIISDNRMV 60

Query: 61  -----------SAA----------------------------GLKLSL------------ 91
                      SAA                            GLKL              
Sbjct: 61  IDDNTILQRELSAAKEEIHRLNQAIPKILSEKEAQSRELLERGLKLEAELRASEPLKSEV 120

[Close]

BLAST of Lag0041386 vs. NCBI nr
Match: XP_022971772.1 (protein FLX-like 3 [Cucurbita maxima] >XP_022971773.1 protein FLX-like 3 [Cucurbita maxima] >XP_022971774.1 protein FLX-like 3 [Cucurbita maxima] >XP_022971775.1 protein FLX-like 3 [Cucurbita maxima] >XP_022971777.1 protein FLX-like 3 [Cucurbita maxima] >XP_022971778.1 protein FLX-like 3 [Cucurbita maxima])

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-16
Identity = 85/261 (32.57%), Postives = 87/261 (33.33%), Query Frame = 0


Query: 1   MAGRNRSSRHIDGYRVSRDVPRPYIDRVPAPLPIHPAALEEELELQ-------------- 60
           MAGRNRSSRHIDGYRVSRDV RPYIDRVPAPLPIHPAALEEEL+LQ              
Sbjct: 1   MAGRNRSSRHIDGYRVSRDVHRPYIDRVPAPLPIHPAALEEELDLQHREMQRIISDNRMV 60

Query: 61  -----------SAA----------------------------GLKLSL------------ 91
                      SAA                            GLKL              
Sbjct: 61  FDDNTILQRELSAAKEEIHRLNQAIPKILNDKEAQSRELLERGLKLEAELRASEPLKSEV 120

[Close]

BLAST of Lag0041386 vs. NCBI nr
Match: XP_022960852.1 (protein FLX-like 3 [Cucurbita moschata] >XP_022960860.1 protein FLX-like 3 [Cucurbita moschata] >XP_022960869.1 protein FLX-like 3 [Cucurbita moschata] >XP_022960879.1 protein FLX-like 3 [Cucurbita moschata] >XP_022960887.1 protein FLX-like 3 [Cucurbita moschata] >XP_022960895.1 protein FLX-like 3 [Cucurbita moschata] >XP_022960901.1 protein FLX-like 3 [Cucurbita moschata] >XP_022960907.1 protein FLX-like 3 [Cucurbita moschata] >KAG7032502.1 Protein FLX-like 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-16
Identity = 85/261 (32.57%), Postives = 87/261 (33.33%), Query Frame = 0


Query: 1   MAGRNRSSRHIDGYRVSRDVPRPYIDRVPAPLPIHPAALEEELELQ-------------- 60
           MAGRNRSSRHIDGYRVSRDV RPYIDRVPAPLPIHPAALEEEL+LQ              
Sbjct: 1   MAGRNRSSRHIDGYRVSRDVHRPYIDRVPAPLPIHPAALEEELDLQHREMQRIISDNRMV 60

Query: 61  -----------SAA----------------------------GLKLSL------------ 91
                      SAA                            GLKL              
Sbjct: 61  IDDNTILQRELSAAKEEIHRLNQAIPKILNDKEAQSRELLERGLKLEAELRASEPLKSEV 120

[Close]

BLAST of Lag0041386 vs. NCBI nr
Match: KAG6601786.1 (Zinc finger protein CONSTANS-LIKE 16, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-16
Identity = 85/261 (32.57%), Postives = 87/261 (33.33%), Query Frame = 0


Query: 1   MAGRNRSSRHIDGYRVSRDVPRPYIDRVPAPLPIHPAALEEELELQ-------------- 60
           MAGRNRSSRHIDGYRVSRDV RPYIDRVPAPLPIHPAALEEEL+LQ              
Sbjct: 398 MAGRNRSSRHIDGYRVSRDVHRPYIDRVPAPLPIHPAALEEELDLQHREMQRIISDNRMV 457

Query: 61  -----------SAA----------------------------GLKLSL------------ 91
                      SAA                            GLKL              
Sbjct: 458 IDDNTILQRELSAAKEEIHRLNQAIPKILNDKEAQSRELLERGLKLEAELRASEPLKSEV 517

[Close]

BLAST of Lag0041386 vs. NCBI nr
Match: XP_023538894.1 (protein FLX-like 3 [Cucurbita pepo subsp. pepo] >XP_023538902.1 protein FLX-like 3 [Cucurbita pepo subsp. pepo] >XP_023538910.1 protein FLX-like 3 [Cucurbita pepo subsp. pepo] >XP_023538919.1 protein FLX-like 3 [Cucurbita pepo subsp. pepo] >XP_023538926.1 protein FLX-like 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-16
Identity = 85/261 (32.57%), Postives = 87/261 (33.33%), Query Frame = 0


Query: 1   MAGRNRSSRHIDGYRVSRDVPRPYIDRVPAPLPIHPAALEEELELQ-------------- 60
           MAGRNRSSRHIDGYRVSRDV RPYIDRVPAPLPIHPAALEEEL+LQ              
Sbjct: 1   MAGRNRSSRHIDGYRVSRDVHRPYIDRVPAPLPIHPAALEEELDLQHREMQRIISDNRMV 60

Query: 61  -----------SAA----------------------------GLKLSL------------ 91
                      SAA                            GLKL              
Sbjct: 61  IDDNTILQRELSAAKEEIHRLNQAIPKILNDKEAQSRELLERGLKLEAELRASEPLKSEV 120

The following BLAST results are available for this feature:

BLAST of Lag0041386 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158741.1	3.8e-17	32.57	protein FLX-like 3 [Momordica charantia]	[more]
XP_022971772.1	1.1e-16	32.57	protein FLX-like 3 [Cucurbita maxima] >XP_022971773.1 protein FLX-like 3 [Cucurb...	[more]
XP_022960852.1	1.1e-16	32.57	protein FLX-like 3 [Cucurbita moschata] >XP_022960860.1 protein FLX-like 3 [Cucu...	[more]
KAG6601786.1	1.1e-16	32.57	Zinc finger protein CONSTANS-LIKE 16, partial [Cucurbita argyrosperma subsp. sor...	[more]
XP_023538894.1	1.1e-16	32.57	protein FLX-like 3 [Cucurbita pepo subsp. pepo] >XP_023538902.1 protein FLX-like...	[more]

BLAST of Lag0041386 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33405:SF19	MYOSIN-LIKE PROTEIN	coord: 1..48
None	No IPR available	PANTHER	PTHR33405:SF19	MYOSIN-LIKE PROTEIN	coord: 54..88
IPR040353	FLC EXPRESSOR/FLX-like	PANTHER	PTHR33405	PROTEIN FLX-LIKE 2	coord: 54..88
IPR040353	FLC EXPRESSOR/FLX-like	PANTHER	PTHR33405	PROTEIN FLX-LIKE 2	coord: 1..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0041386.1	Lag0041386.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation