Lag0041356 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0041356
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr13: 16338337 .. 16341685 (-)
RNA-Seq Expression	Lag0041356
Synteny	Lag0041356

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGGGTCGAGCTTTTCCCCCTTCGCACAACTCCTAGAGTCCCTTGGCCGCCTCAATTCCACCTGGTTCTGTCCGAATCGTCTCCAAACTCCTAGAAACCCTAAGGTAGGAAAAGGTATATAAATCATTCTTCGTCATTGAAGAAGGGATCTCAAACTCTACTCTCTGAATTCTACTCCTCTCTTGTTCTCTTGCTCTCTCATCTTACTCCTTGTTGACTTAAGCATCGGAGGCGGTGTGGCAAGCACCACATTGGTGTGCAGGTTTCCTTGTCTTGCAGGCCACGCCTTCCCCTTTCAAACAAATTTACCGTTGGTGGCACGTGAAGGTCAGGTGAGTTCTCCCTGTCCGAATTTTGGCATCAACAATATATATATATATATTAATTAGTTGATTATTAATTAATTAATATTTTAATTAAATATTTTTTAAAATAAAATAACCAACTCCCCACATGGGGAGTGGTTACGTGGATAACTCCCTTCTCTCCAAGATTAATCTCTCTCCCTCATGCCAGAAAAAGGCCTCTAGAAGAATCTCTCTAGTGTACGTATTCTCACTCAAAAGGTTTCTCTCTACCAAGGAGAGGAACAAAGAAACATTCTTCTTTGTATTCTTCCTAATTTGAAGACGGAGGTCCCACAACCTTGTTCCTAAACCCAGAGACATAGTAGGGAAGTTCTTTTGGTGGTGTCCCAACTATTGGTGTTTTACTTTTGGTCCCTACAATCAGAGAGTTCTTGATCTTTCAGAGTCGTCAACGACGATGAGTTTGCTAAACTCGTTACACTAATTTAAATGTATGCTTAGCCTAGATAATTATATAGAATTGTTTTGTATGGTTTGTCAATGTACTGGTATTTCGAGAAACCTAATTAAATTGTGAATGGTCTTATACGCTTCCGCTAGGAATTTAGGAATTCCAATCGTTCACTGTTGCCCTGAACGAAACCTCAACCTTCGCCACAAAACTCAGAGGCACGTTGGTCATGGACAAGAATCTAGCAAAGAAGGTGCAACCTCATTGGGAGGTTGGTTCGTCGTCTGGGGTTAAAAGGAAACCCTCTCCAGCACAGGTCAGACCACTATAGAAAGCTCCTCGGCAACAACCCTTGAGGCAAGCTCCTGCCATTCCCTTTTGCAATGTGTGCAGAAAGCACCACTTGGGACAATGTGAGTCGGGAGAAAAGGCTTGCTTTAGGTGTGAGCAGGAAAGGCACTATGCAAAGTGGTCTTTGATAGGTATAATTTGTTATACATTTATAATCTCCAAATTTTCTTATCTTAGTTGAATTCCTTGCGGAAAAAATGTCTTAAAATGAGTATAATATGTGTATAACTCCTTGACGGAGCTTTGGAAGCAATTCGGGGCTAAAATGAGCAAAACCGAAGCATAAAATGACCAAATATCCCTTGGAGTCAAAGCATGGCGTCTAGACTCTGGTTGGTAGCGTCTCAATGCTCTGCAACCTCAAATTCAAGCCAAACACCCAAGAGCACAACGTCTTAATGATGTGTCTCGACGCTGCGGCAAAAACTTGACAAACGTCGAGACGCTGTGCCTAGCCTCTTTCGTCATTCTTCCTTTTGCATAAACTAATTTTTTTGATGCAAGAACTCAAAATTTTCAATAACGTGGAAAGTGGTCAAGGCTAACCCTATGTTCTTACCACGTGTGTCACGTAAATGGCTAAACAAAGGAAGTGCTTACACAAGGGGCTTCAAAATAAGGTAATTGATTGAACGACGTTCAAATATGAAGGAATGAGAATGGAAGGTCCAAAAGAAAGGCACAAAGGTTTGAACACACTCCAAACCTCAGCCTCGGCTTCATCCCTAGGCCGAGGCCGAAGCCGGGGTCGAGGCTCGTCCAACCGTTCCTACATATCCTCATTTTTCTCATTTTTATCTTACCTAACCCCTAATCAGGGAGTCTGACCACTTTTTTCCTCTCTTAAAGGATAATAAGAAATTAACATATGAATCAACACAAGGGAAAGATCATTACTCTAAAATTGGACTTAAGAAGCTCGACTTATAGTGATAAGCCACACCTAAATCGCAATTCAAGAGTAGGGACTTAATGTTATAGGTAATTTTGGACCACTTCGAGATATAAGGAACTGACGAGGATAGCACAACACCAACCCAAAGTCACGGCCAACAAACAGACCCTGAAGGAGATATAGGCCGAAGGATTGGGCCAAGACAAAAGGGATCAGGCCTTGGCCCAATCCTATGGTCGGTCAAGGCCCGAGGCTGAGGTCGACCCTCAGCCCACTTGTGTGGGTCCAGGTTCCTCTCCCTCTACTCGGTTCCTGGTGTCCTGGGTCAACCCTGTTTGACTTGGTTTGGCCCCGAATCGTCTCCAAACGCCTAGAAAACGTAAAACATGAATAGGTATATAAACCCTTCTTCGTCATTGAAGAAGGGATCCTGAAACACATTCTCTAAACTCCCTCCTCTTCCTCTTGCTCTCTTATTTGCTTCCCATCTGTCTCCTTGTTGACTTAAGCATCGGAGGCGGTGTGGCAAGTGTTGTGTTCTATGTCCTAAAACTCGTGGATAGTAAATGTAACAAATTAATTAATATCAAAGAGTTATTGAAATTATTCAATAAGGAGTTATTGAATTTGTTATTCTTAGTCTTGCAATAATTAACCTTAAATCCAATAAACTAAACATCCAAGATTGTTTTATGAAACTTGAACTGTATGTGGAGACATATAGGAATCAATGTTCAAGTAACAACCTACAGGGTCTATAGTATAGGGATAAGGCTGGGTACCTTATCTTGGTGACACTATGTGATACAACCCAGTTTGTATTCGATACAAATGCATTGATCCAGCGGCGTTCATGTAGTGGACATGCAAGTGGGGGTATCCTATTGATAGCGAGCATAGCTAGCTATTTTTCTCTTATTAATTAAGCTAGTCTTTTACAATTATTTGACCATGCATTTTTATGTTTAATTTGTAGGAAGTATGTGTTTGAAGCTTAATTCAGCAATTGGAGTCAAATGGAGTTCAACCCTAAAAAAAAAAAAAAAAAACCATAGTGTCGCGACGCTATCGGCAAATTTTCCAAGAACGCGGTATCGCGACAGCGTCGCGACGCTGCCATAGCGTCTCGACGCTGTCGCCAGATTTTCTATAAATTCCTCTTTTCAGCTATGGATTTGGGGAGCCCAATTGGTGAGATTTTAGCCCTAATTTCGACTAGAGACCTTTTGTGGGAGCTAAAGGCAAGGCCAAGGAGTGGGAATCAAGCGAGAAGACGTGGAGATCGTGACGGGGACGTGCCGGTGTCGGCGGATTCGAGTTTTCCTTTCTCTTTCCCTTAA

mRNA sequence

ATGTGTGGGTCGAGCTTTTCCCCCTTCGCACAACTCCTAGAGTCCCTTGGCCGCCTCAATTCCACCTGGTTCTGTCCGAATCGTCTCCAAACTCCTAGAAACCCTAAGGTAGGAAAAGGCCACGCCTTCCCCTTTCAAACAAATTTACCGTTGGTGGCACGTGAAGGTCAGGAATTCCAATCGTTCACTGTTGCCCTGAACGAAACCTCAACCTTCGCCACAAAACTCAGAGGCACGTTGGTCATGGACAAGAATCTAGCAAAGAAGGTGCAACCTCATTGGGAGGTTGGTTCGTCGTCTGGGGTTAAAAGGAAACCCTCTCCAGCACAGGCCGAAGGATTGGGCCAAGACAAAAGGGATCAGGCCTTGGCCCAATCCTATGGTCGGTCAAGGCCCGAGGCTGAGGTCGACCCTCAGCCCACTTGTGTGGGTCCAGGTTCCTCTCCCTCTACTCGGTTCCTGCGTCGCGACGCTGCCATAGCGTCTCGACGCTGTCGCCAGATTTTCTATAAATTCCTCTTTTCAGCTATGGATTTGGGGAGCCCAATTGGTGAGATTTTAGCCCTAATTTCGACTAGAGACCTTTTGTGGGAGCTAAAGGCAAGGCCAAGGAGTGGGAATCAAGCGAGAAGACGTGGAGATCGTGACGGGGACGTGCCGGTGTCGGCGGATTCGAGTTTTCCTTTCTCTTTCCCTTAA

Coding sequence (CDS)

ATGTGTGGGTCGAGCTTTTCCCCCTTCGCACAACTCCTAGAGTCCCTTGGCCGCCTCAATTCCACCTGGTTCTGTCCGAATCGTCTCCAAACTCCTAGAAACCCTAAGGTAGGAAAAGGCCACGCCTTCCCCTTTCAAACAAATTTACCGTTGGTGGCACGTGAAGGTCAGGAATTCCAATCGTTCACTGTTGCCCTGAACGAAACCTCAACCTTCGCCACAAAACTCAGAGGCACGTTGGTCATGGACAAGAATCTAGCAAAGAAGGTGCAACCTCATTGGGAGGTTGGTTCGTCGTCTGGGGTTAAAAGGAAACCCTCTCCAGCACAGGCCGAAGGATTGGGCCAAGACAAAAGGGATCAGGCCTTGGCCCAATCCTATGGTCGGTCAAGGCCCGAGGCTGAGGTCGACCCTCAGCCCACTTGTGTGGGTCCAGGTTCCTCTCCCTCTACTCGGTTCCTGCGTCGCGACGCTGCCATAGCGTCTCGACGCTGTCGCCAGATTTTCTATAAATTCCTCTTTTCAGCTATGGATTTGGGGAGCCCAATTGGTGAGATTTTAGCCCTAATTTCGACTAGAGACCTTTTGTGGGAGCTAAAGGCAAGGCCAAGGAGTGGGAATCAAGCGAGAAGACGTGGAGATCGTGACGGGGACGTGCCGGTGTCGGCGGATTCGAGTTTTCCTTTCTCTTTCCCTTAA

Protein sequence

MCGSSFSPFAQLLESLGRLNSTWFCPNRLQTPRNPKVGKGHAFPFQTNLPLVAREGQEFQSFTVALNETSTFATKLRGTLVMDKNLAKKVQPHWEVGSSSGVKRKPSPAQAEGLGQDKRDQALAQSYGRSRPEAEVDPQPTCVGPGSSPSTRFLRRDAAIASRRCRQIFYKFLFSAMDLGSPIGEILALISTRDLLWELKARPRSGNQARRRGDRDGDVPVSADSSFPFSFP

Homology

[Close]

BLAST of Lag0041356 vs. NCBI nr
Match: XP_022155872.1 (uncharacterized protein LOC111022885 [Momordica charantia])

HSP 1 Score: 55.5 bits (132), Expect = 7.3e-04
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 64  VALNETSTFATKLRGTLVMDKNLAKKVQPHWEVGSSSGVKRKPSPAQAE 113
           V L   +T+A  +RG L+MDK+++ +VQP  EVGSSSGVKRK SPA A+
Sbjct: 100 VDLQRPATYAEAVRGALIMDKDVSNRVQPLVEVGSSSGVKRKVSPAYAD 148

[Close]

BLAST of Lag0041356 vs. ExPASy TrEMBL
Match: A0A6J1DQJ4 (uncharacterized protein LOC111022885 OS=Momordica charantia OX=3673 GN=LOC111022885 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.5e-04
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 64  VALNETSTFATKLRGTLVMDKNLAKKVQPHWEVGSSSGVKRKPSPAQAE 113
           V L   +T+A  +RG L+MDK+++ +VQP  EVGSSSGVKRK SPA A+
Sbjct: 100 VDLQRPATYAEAVRGALIMDKDVSNRVQPLVEVGSSSGVKRKVSPAYAD 148

[Close]

BLAST of Lag0041356 vs. ExPASy TrEMBL
Match: A0A6J1DYU5 (uncharacterized protein LOC111025517 OS=Momordica charantia OX=3673 GN=LOC111025517 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 6.0e-04
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 64  VALNETSTFATKLRGTLVMDKNLAKKVQPHWEVGSSSGVKRKPSPAQAE 113
           V L   +T+A  +RGTL+MD +++  VQP  EVGSSSGVKRK SPA A+
Sbjct: 116 VDLQRPATYAEAVRGTLIMDNDVSNSVQPLVEVGSSSGVKRKVSPAYAD 164

The following BLAST results are available for this feature:

BLAST of Lag0041356 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155872.1	7.3e-04	57.14	uncharacterized protein LOC111022885 [Momordica charantia]	[more]

BLAST of Lag0041356 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0041356 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DQJ4	3.5e-04	57.14	uncharacterized protein LOC111022885 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DYU5	6.0e-04	57.14	uncharacterized protein LOC111025517 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of Lag0041356 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 204..219
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 204..232
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0041356.1	Lag0041356.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding