Lag0041354 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0041354
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionAspergillus niger contig An12c0370, genomic contig
Locationchr13: 16307999 .. 16309951 (+)
RNA-Seq ExpressionLag0041354
SyntenyLag0041354
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCGAGAAGACGATATGAGGACGAAGTACCCAGAGCTATTCCAAGACTAGCAACTTTCGAGGACGAAAGTCCTTTTAAGGAGGGAAGATTGTAACGCCTACACTTAAGGTATTGTGAGGGAAGAGTATTTTTGTAAATTTCTTGAATTTGGACTAAGACCTAACCCTAACCAATTTCTACATTTCAACTTTCAGCCTCCACCTCCCTTTTCTTCACGCGTATAGCAGCAGCCGAAATCCCCTTCTTTTTTTTTCTGCGATTTCTCCTTCGTGTAACAGCCGCCCAAGTCATTCAGTCACAAGCAACCATTCGAACTAACCTCAACCGACAGCCCCTCTCCTTCGTCGCGTGTTCGTGCGTCTCCCTTTCGGCGGCGTGGGCAGCAGGTGCAGCGACAGTTCGTCTCTTCGGCTAACAGCAGGTGAGTTGTTCCGTTTTCGTTTCTCCTTTGGGTGTTATTTTCCGCTTTGAAGTTTATGAAGTTTTCGTACTCATGCATGTAGTAGCGACCCCCCTTGTATGTTTTATTCCCTCTTTAGTCGGGTCGTTACAGAGGCCGACCAGCTCCTCTGTGTTGTTCGCTTGCTCGCTCCATAATTGGGCTTATGTGCAGATTTTTCTAGCTCTTCTGTGTTTTCTGCTTGCTTGTTTTCCATCCCAAGGGTGCATGCACTTAGTCGGGGAAAACTTGGGGAGGTCGAGGAAATTCCCGAGTCTCTTTTCAAGTGATGTGTTCATCTCGAGGGTGCGTACACTCAGTCGGGGAAAACTTAGGGAGGTCGAGGAAATATCCGAGCCTCTCTTCAAGTGTTGTGTTCATCCCGAGGTGTGCGTACACTCTTCTGAGAAGACTTGAGGAAGTCGAGAAAATTCTCGAGCCTCTCTTCAAGTGTTGTGTTCATCCCGAGGGTGCGTACACTCAGTCGGGGAAAACTTGGGGAGGTCGAAGAAATACCCGAGCCTTTCTTCAAGTGTTGTGTTCATCCTGAGGGTGCGTACACTCAGTCGGGGAAAACTTGGGGAGGCCGAGGAAATTTCCGAGCCTCTCTTCAAGTGTTGTGTTCATCCCAGGGGTGCGTACGCTCTTCAGGGGAAACTTGGGGAGGTCGAGGAAATTTCTGAGCCTCTCTTCAAGTGTCGTGTTCATCCCAAGGGTGCGTACACTCTTCTGGGGAAACTTGGGGAGGTCGAGGAAATTCTCGAGCCTCTCTTCAAATGTTGTGTTCATCCCGAGGGTGCGTACACTCAGTCGGGGAAAACTTGGGGAGGCCGAGAAAATACCCGAGCCTCTCTTCAAGTGTTGTGTTCATCCCGAGGGTGCGTACACTCAGTCGGGGAAAACTTGGGGAGACCGAGGAAATTCCCGAGCCTCTCTTCAAGTGTTGTGTTCATCCTAGGGGTGCGTACACTTTTCTGGGAAAACTTGGTAAGGTCGAGGAAATTCTCGAGCCTCTCTTCAAGTGTTGTGTTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAACTTGGGGAGGTCGAGGAAATTCCTGAGCCTCTCTTCAAGTGTTGTGTTCATCCCGAGGGGGCGTACACTAAGTCGGGGAAAACTTGGGGAGGTCGAGGAAATTCCCGAACCTCTCTTCAAGTGTTGTGTTCATCCCAGGGGTGCGTACACTTTTCTGGAAAAACTTAGGGAGGTCGAGGAAATTCTCGAGCCTCTCTTCAAGTGTTGTGTTCATCCCAGGGGTGGGTACACTCTTCTGGGGAAACTAGGGGAGGTCGAGGAAATTCCCGAGCCTTTCTTTAAGAAATTTTCATCCCAAGGGTGCGTACACTCTGTTGGGGACCTGGGGAGGTTGAGGACATGCGTCAACCTCTCTGCAGGAATTAGTCTCTTCCCAAGGGTGCACACACTCTGTTGGGGACCTGGGGAGGTTGAGGACATGCGTCAACCTCTCTACTGGAATTAG

mRNA sequence

ATGGGAGCGAGAAGACGATATGAGGACGAAGTACCCAGAGCTATTCCAAGACTAGCAACTTTCGAGGACGAAACCGCCCAAGTCATTCAGTCACAAGCAACCATTCGAACTAACCTCAACCGACAGCCCCTCTCCTTCGTCGCGTGTTCGTGCGTCTCCCTTTCGGCGGCGTGGGCAGCAGTCGGGGAAAACTTGGGGAGGTCGAAGAAATACCCGAGCCTTTCTTCAAGTGTTGTGTTCATCCTGAGGGTGCGTACACTCAGTCGGGGAAAACTTGGGGAGGCCGAGGAAATTTCCGAGCCTCTCTTCAAGTGTTGTGTTCATCCCAGGGGTGCGTACGCTCTTCAGGGGAAACTTGGGGAGGTCGAGGAAATTTCTGAGCCTCTCTTCAAGTGTCGTGTTCATCCCAAGGGTGCGTACACTCTTCTGGGGAAACTTGGGGAGGTCGAGGAAATTCTCGAGCCTCTCTTCAAATGTTGTGTTCATCCCGAGGGTGCGTACACTCAGTCGGGGAAAACTTGGGGAGGCCGAGAAAATACCCGAGCCTCTCTTCAAGTGTTGTGTTCATCCCGAGGGTGCGTACACTCAGTCGGGGAAAACTTGGGGAGACCGAGGAAATTCCCGAGCCTCTCTTCAAGTGTTGTGTTCATCCTAGGGGTGCGTACACTTTTCTGGGAAAACTTGGTAAGGTCGAGGAAATTCTCGAGCCTCTCTTCAAGTGTTGTGTTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAACTTGGGGAGGTCGAGGAAATTCCTGAGCCTCTCTTCAAGTGTTGTGTTCATCCCGAGGGGGCGTACACTAAGTCGGGGAAAACTTGGGGAGGTCGAGGAAATTCCCGAACCTCTCTTCAAGTGTTGTGTTCATCCCAGGGGTGCGTACACTTTTCTGGAAAAACTTAGGGAGGTCGAGGAAATTCTCGAGCCTCTCTTCAAGTGTTGTGTTCATCCCAGGGGTGGGTACACTCTTCTGGGGAAACTAGGGGAGGTCGAGGAAATTCCCGAGCCTTTCTTTAAGAAATTTTCATCCCAAGGGTGCGTACACTCTGTTGGGGACCTGGGGAGGTTGAGGACATGCGTCAACCTCTCTGCAGGAATTAGTCTCTTCCCAAGGGTGCACACACTCTGTTGGGGACCTGGGGAGGTTGAGGACATGCGTCAACCTCTCTACTGGAATTAG

Coding sequence (CDS)

ATGGGAGCGAGAAGACGATATGAGGACGAAGTACCCAGAGCTATTCCAAGACTAGCAACTTTCGAGGACGAAACCGCCCAAGTCATTCAGTCACAAGCAACCATTCGAACTAACCTCAACCGACAGCCCCTCTCCTTCGTCGCGTGTTCGTGCGTCTCCCTTTCGGCGGCGTGGGCAGCAGTCGGGGAAAACTTGGGGAGGTCGAAGAAATACCCGAGCCTTTCTTCAAGTGTTGTGTTCATCCTGAGGGTGCGTACACTCAGTCGGGGAAAACTTGGGGAGGCCGAGGAAATTTCCGAGCCTCTCTTCAAGTGTTGTGTTCATCCCAGGGGTGCGTACGCTCTTCAGGGGAAACTTGGGGAGGTCGAGGAAATTTCTGAGCCTCTCTTCAAGTGTCGTGTTCATCCCAAGGGTGCGTACACTCTTCTGGGGAAACTTGGGGAGGTCGAGGAAATTCTCGAGCCTCTCTTCAAATGTTGTGTTCATCCCGAGGGTGCGTACACTCAGTCGGGGAAAACTTGGGGAGGCCGAGAAAATACCCGAGCCTCTCTTCAAGTGTTGTGTTCATCCCGAGGGTGCGTACACTCAGTCGGGGAAAACTTGGGGAGACCGAGGAAATTCCCGAGCCTCTCTTCAAGTGTTGTGTTCATCCTAGGGGTGCGTACACTTTTCTGGGAAAACTTGGTAAGGTCGAGGAAATTCTCGAGCCTCTCTTCAAGTGTTGTGTTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAACTTGGGGAGGTCGAGGAAATTCCTGAGCCTCTCTTCAAGTGTTGTGTTCATCCCGAGGGGGCGTACACTAAGTCGGGGAAAACTTGGGGAGGTCGAGGAAATTCCCGAACCTCTCTTCAAGTGTTGTGTTCATCCCAGGGGTGCGTACACTTTTCTGGAAAAACTTAGGGAGGTCGAGGAAATTCTCGAGCCTCTCTTCAAGTGTTGTGTTCATCCCAGGGGTGGGTACACTCTTCTGGGGAAACTAGGGGAGGTCGAGGAAATTCCCGAGCCTTTCTTTAAGAAATTTTCATCCCAAGGGTGCGTACACTCTGTTGGGGACCTGGGGAGGTTGAGGACATGCGTCAACCTCTCTGCAGGAATTAGTCTCTTCCCAAGGGTGCACACACTCTGTTGGGGACCTGGGGAGGTTGAGGACATGCGTCAACCTCTCTACTGGAATTAG

Protein sequence

MGARRRYEDEVPRAIPRLATFEDETAQVIQSQATIRTNLNRQPLSFVACSCVSLSAAWAAVGENLGRSKKYPSLSSSVVFILRVRTLSRGKLGEAEEISEPLFKCCVHPRGAYALQGKLGEVEEISEPLFKCRVHPKGAYTLLGKLGEVEEILEPLFKCCVHPEGAYTQSGKTWGGRENTRASLQVLCSSRGCVHSVGENLGRPRKFPSLSSSVVFILGVRTLFWENLVRSRKFSSLSSSVVFIPGVRTLFWGNLGRSRKFLSLSSSVVFIPRGRTLSRGKLGEVEEIPEPLFKCCVHPRGAYTFLEKLREVEEILEPLFKCCVHPRGGYTLLGKLGEVEEIPEPFFKKFSSQGCVHSVGDLGRLRTCVNLSAGISLFPRVHTLCWGPGEVEDMRQPLYWN
Homology
[Close]
BLAST of Lag0041354 vs. NCBI nr
Match: CAK41400.1 (unnamed protein product [Aspergillus niger])

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-04
Identity = 32/108 (29.63%), Postives = 53/108 (49.07%), Query Frame = 0 

Query: 68  SKKYPSLSSSV---VFILRVRTLSRGKLGEAEEISEPLFKCCVHPRGAYALQGKLGEVEE 127
           S+KYP    S+   VFI +     +GKL  AE++ + +F+C  +    Y  QGKL E E+
Sbjct: 359 SEKYPDTFQSMLQFVFIYQ----EQGKLERAEKLGDEVFQCMANLVAIYREQGKLNEAEK 418

Query: 128 ISEPLFKCRVHPKGAYTLLGKLGEVEEILEPLFKCCVHPEGAYTQSGK 173
           +   + K        Y   G L E E++++ + +C  +    Y + GK
Sbjct: 419 MGGEMLKSMTKLVLIYCWRGSLEEAEKVVDKVLQCMANIMSIYREQGK 462

[Close]
BLAST of Lag0041354 vs. NCBI nr
Match: RDK45914.1 (TPR-like protein [Aspergillus phoenicis ATCC 13157])

HSP 1 Score: 56.6 bits (135), Expect = 5.7e-04
Identity = 33/127 (25.98%), Postives = 60/127 (47.24%), Query Frame = 0 

Query: 68  SKKYPSLSSSVVFILRVRTLSRGKLGEAEEISEPLFKCCVHPRGAYALQGKLGEVEEISE 127
           S+K+P    S+V ++ +    +GKL E E+I + +F+C  +    Y  QGKL E E++ +
Sbjct: 537 SEKHPDTLRSMVNLMLIYH-EQGKLKETEKIGDEVFQCMANLVSIYREQGKLEEAEDMGD 596

Query: 128 PLFKCRVHPKGAYTLLGKLGEVEEILEPLFKCCVHPEGAYTQSGK------TWGGRENTR 187
            + +             KL E E++++ +F+C       Y + GK       W     + 
Sbjct: 597 EVLQSMEKLVKICYQQDKLKEAEKVVDKVFQCMATIISIYREQGKLKEVNRVWYNVSQSI 656

Query: 188 ASLQVLC 189
           A+L  +C
Sbjct: 657 ATLVSIC 662

[Close]
BLAST of Lag0041354 vs. ExPASy TrEMBL
Match: A2R110 (Aspergillus niger contig An12c0370, genomic contig OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=An12g10530 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.5e-05
Identity = 32/108 (29.63%), Postives = 53/108 (49.07%), Query Frame = 0 

Query: 68  SKKYPSLSSSV---VFILRVRTLSRGKLGEAEEISEPLFKCCVHPRGAYALQGKLGEVEE 127
           S+KYP    S+   VFI +     +GKL  AE++ + +F+C  +    Y  QGKL E E+
Sbjct: 359 SEKYPDTFQSMLQFVFIYQ----EQGKLERAEKLGDEVFQCMANLVAIYREQGKLNEAEK 418

Query: 128 ISEPLFKCRVHPKGAYTLLGKLGEVEEILEPLFKCCVHPEGAYTQSGK 173
           +   + K        Y   G L E E++++ + +C  +    Y + GK
Sbjct: 419 MGGEMLKSMTKLVLIYCWRGSLEEAEKVVDKVLQCMANIMSIYREQGK 462

[Close]
BLAST of Lag0041354 vs. ExPASy TrEMBL
Match: A0A370PVK1 (TPR-like protein OS=Aspergillus phoenicis ATCC 13157 OX=1353007 GN=M752DRAFT_274006 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.7e-04
Identity = 33/127 (25.98%), Postives = 60/127 (47.24%), Query Frame = 0 

Query: 68  SKKYPSLSSSVVFILRVRTLSRGKLGEAEEISEPLFKCCVHPRGAYALQGKLGEVEEISE 127
           S+K+P    S+V ++ +    +GKL E E+I + +F+C  +    Y  QGKL E E++ +
Sbjct: 537 SEKHPDTLRSMVNLMLIYH-EQGKLKETEKIGDEVFQCMANLVSIYREQGKLEEAEDMGD 596

Query: 128 PLFKCRVHPKGAYTLLGKLGEVEEILEPLFKCCVHPEGAYTQSGK------TWGGRENTR 187
            + +             KL E E++++ +F+C       Y + GK       W     + 
Sbjct: 597 EVLQSMEKLVKICYQQDKLKEAEKVVDKVFQCMATIISIYREQGKLKEVNRVWYNVSQSI 656

Query: 188 ASLQVLC 189
           A+L  +C
Sbjct: 657 ATLVSIC 662

The following BLAST results are available for this feature:
BLAST of Lag0041354 vs. NCBI nr
Match NameE-valueIdentityDescription
CAK41400.11.1e-0429.63unnamed protein product [Aspergillus niger][more]
RDK45914.15.7e-0425.98TPR-like protein [Aspergillus phoenicis ATCC 13157][more]
BLAST of Lag0041354 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0041354 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A2R1105.5e-0529.63Aspergillus niger contig An12c0370, genomic contig OS=Aspergillus niger (strain ... [more]
A0A370PVK12.7e-0425.98TPR-like protein OS=Aspergillus phoenicis ATCC 13157 OX=1353007 GN=M752DRAFT_274... [more]
BLAST of Lag0041354 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0041354.1Lag0041354.1mRNA