Lag0041344 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0041344
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr13: 16087462 .. 16090008 (-)
RNA-Seq Expression	Lag0041344
Synteny	Lag0041344

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACTACATGGACGTTTTGGATCAATACGTCTGTATCAAATACAAAGCGAGCCGTATCACATAGTGTTACCAGGATAAGGTACCCAACCTTATCCCTGTACTATAGACCTTTTAGGTTGTTACTTGAACATCGATCCCCGTATGTCCCCACATACTAGTTCAAGTTACATACAAACAATCTTGGATCTTAGTTTATTGGATTTGGATCATACTACGCAATACTTAACAATAACACTTTATTGTAGAAACTTAATAACACTTTATTGAAACAAGTATACAATTTGTTTACATTAAATACCTACAAGTTTTAGAGCATAAAACCCAACAAGAAGATGATCAATTAAAGTTTTGGAAAGTCTGGCAATAAAAGAAGGATTGAAGGCTTACCTGGAATCAAAAGACATCAGAAGAACACCGATTATAGTGGAAGTGGATGCGTCAGAAGTGATTAAGGCGCTGAACTTTGAATGCGATGACTTGTCTATAACGAAGTTCATTATCTCTGATATTGAATCCTTAGAATCATGGGCTGAAGTTGTCTCTTTCGAAAAGTGCCCTAGAGCATGTAATAGGAGCGCACATCTTCTCGCGCGTATGGTGGTCGGATTCAGGCCGCCAGAGTTCCTACCATCCGATGTTGACGATAGGAGTGCTGGTAGTTTGTTCGATAGTTTTTTTTAGCTTTCCCATTCTTCGACACTGTAAGAGAATTATTTTTGTTGGGGAAATGCTATTACTCATTGGATTTCCTGTTTTATTTAAGAAGATGTTGGTGTTGGTGTATCTGTTCTTCCCAATTAATGCATTTTCAATTTCAAAAAAAAAAAAAAAAAAAAAAAGAGAAGAGGAAACTATATGTTTGATAGTCCAACTTTATAAATCACGTGTAAACGCATGTAGTATAAACTTAATTATTATTTTATTGTAGACTATTTAATTGAAACGTATCTAGATATGTGTTATGTTGAACTAAACAATAAAAAGAAAAAGAAGAGATTAAGTAGATGTCCACAACTTCGTAATATTATTGACTGAAAGGATATTTTGTCAGAAGTGGGATTTGAACCCACGCCCTCTCACGAGGACCAGAACTTGAGTCTGGCGCCTTAGACCACTCGGCCACCCTGACTTATGATGGTGTTGTTGTATCCGTTTTTCCCCATTAATGCATTTTCAATTTCAAAAAAAAAAAAACTATATGCTTAATAGTTCAACTTTATAAACCACGTGCAACGCACGTAGTATAAAACATAATTATTAATTTATTGTAGACTATTTAATTGAAACCTATATATATCTAGATATGTGTTTTGTTCATTTATCTAATGAATAGATGAATTGATTTCTCTTACATGTAAAAAAAAAAGAAGAGGAAACTATATGCATGATAGTCCAACTTTATAAACCACGTGTAAACGCACGTAGTATAAAACTTAATTATTATTGTAGACTATTTAATTGAAACCTATAATATAACTAGATATGTGTTTTGTTCATTTGTCTAATGAATAGAAAAAGAAGAGATTCAATAGATGTCTACAACTGCAATATTATTGAATGAAAAATTGTATTATGTCAGAAGTGAGATTTGAACCCACGCCCTCTCACGAGGACCAGAACTTGAGTCTGGCGCCTTAGACCACTCGGCCACCCTGACTTATGTTTTATTTCATATTATTTATTAATTATTTGATGTATATAACAAACATGTTAGTTTACTTTTTTAAAAAAAAAAGAACATGTTAGGTTACTTATTTCCAAATTTAATATTAAACTCAAATTTATTTATTTGTTTTTTTTTTTTTTTGAGTACATCAAAATTTGAGGGTGGGAGAATTCGAACCTCTGACCTCATGGTCGAGGGTACATGCCAATTACCGCTGAGCTAAGCTCGCTTTAGCAAATTTATTTATTTGTTTATTGAGTTTTGAACATTATGTCTTGTGAAATTTTATTCAAATGAATATTATTTGAAATTTGGAGATAAAAATCAAATTTAAAAAATAACTCAATCAGTAGAAACTCCAATCACTCTCATTGGGACAACAGATAATAAAGTTGAGGCCCATTGCATTGTACTTGTTGTAAAAGAAATATATATATGTGTGATAAGGATCAAAATATATATTTTTACCTAAAGTTTAATGATTGATCTAATTATTTGAAAACAAAATGGCTAAATTAAAACCAGTTCAAGATCCAAATAAAACTTACTTTTTTTTTTTTTTATAATAAAAGAAATTGACTTTCTAGGATCTGTTTTACATAATTTATTTATTTTTTAGATAAAAAAAAATGAAATCTATATATTCATTAAATATAACGCAAACATATTTAATGACAAAATCTATATATTAAATCAAACATATTTAATGCAAAACATATTCATTAAATCTATATATTCATTAAATCCCCGGGAATGTCATACTCGTACCGTAGGTGTTCAAGTTGAGCCTCGGTCACCGAGGATGACAAAATTGGGGTATGAGCGGGAGGCTCATGGTCGCTGTCTTACAAGAGAGAAGGATCTACGTAGACACTAG

mRNA sequence

ATGTCTACTACATGGACGTTTTGGATCAATACGTCTGTATCAAATACAAAGCGAGCCGTATCACATAGTGTTACCAGGATAAGTCTGGCAATAAAAGAAGGATTGAAGGCTTACCTGGAATCAAAAGACATCAGAAGAACACCGATTATAGTGGAAGTGGATGCGTCAGAAGTGATTAAGGCGCTGAACTTTGAATGCGATGACTTGTCTATAACGAAGTTCATTATCTCTGATATTGAATCCTTAGAATCATGGGCTGAAGTTGTCTCTTTCGAAAAGTGCCCTAGAGCATGTAATAGGAGCGCACATCTTCTCGCGCGTATGGTGGTCGGATTCAGGCCGCCAGAGTTCCTACCATCCGATGTTGACGATAGGAGTGCTGGTGTTCAAGTTGAGCCTCGGTCACCGAGGATGACAAAATTGGGGTATGAGCGGGAGGCTCATGGTCGCTGTCTTACAAGAGAGAAGGATCTACGTAGACACTAG

Coding sequence (CDS)

ATGTCTACTACATGGACGTTTTGGATCAATACGTCTGTATCAAATACAAAGCGAGCCGTATCACATAGTGTTACCAGGATAAGTCTGGCAATAAAAGAAGGATTGAAGGCTTACCTGGAATCAAAAGACATCAGAAGAACACCGATTATAGTGGAAGTGGATGCGTCAGAAGTGATTAAGGCGCTGAACTTTGAATGCGATGACTTGTCTATAACGAAGTTCATTATCTCTGATATTGAATCCTTAGAATCATGGGCTGAAGTTGTCTCTTTCGAAAAGTGCCCTAGAGCATGTAATAGGAGCGCACATCTTCTCGCGCGTATGGTGGTCGGATTCAGGCCGCCAGAGTTCCTACCATCCGATGTTGACGATAGGAGTGCTGGTGTTCAAGTTGAGCCTCGGTCACCGAGGATGACAAAATTGGGGTATGAGCGGGAGGCTCATGGTCGCTGTCTTACAAGAGAGAAGGATCTACGTAGACACTAG

Protein sequence

MSTTWTFWINTSVSNTKRAVSHSVTRISLAIKEGLKAYLESKDIRRTPIIVEVDASEVIKALNFECDDLSITKFIISDIESLESWAEVVSFEKCPRACNRSAHLLARMVVGFRPPEFLPSDVDDRSAGVQVEPRSPRMTKLGYEREAHGRCLTREKDLRRH

Homology

The following BLAST results are available for this feature:

BLAST of Lag0041344 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0041344 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 30..108 e-value: 5.4E-7 score: 29.5
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 29..107 e-value: 1.98114E-11 score: 56.1684

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0041344.1	Lag0041344.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity