Lag0041335 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0041335
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionzf-RVT domain-containing protein
Locationchr13: 15855918 .. 15856745 (-)
RNA-Seq ExpressionLag0041335
SyntenyLag0041335
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAAGTGTCAAGAGGCCTCATTGTCAAATGTGGAAAAGGAGACTACTTGGTGGAATAGGGTGTGGAAGATGAGAGTGCCTAGCAAAGTGAAAATTTTCTTCTGGAAAACTGTTCACAACTCTATCCCAACTATGGTAAACCTACGGAATCATCATGTATCGGTTAACGGGAATTGCCCGGTTTGCCAGGAGGAGATGGAGACTTCAGACCATGCCCTCTTTCAGTGTACGAGGGCTCGTGAGGTATGGGACCTTCTTTATCCACCAATGATGAGGAATTTATGGGTTCATATGGATATTAAAGACTACTGGTTGAGTTTGGCTGACAATCCAATGGAGGTCTTAGAGCGTATTTGTGTGGGGACCTGGTCAATTTGGAACGACAGGAATAACTCGTTACATCAGTGTCAAATCCCTAATCCAAAGCTTAGATGTGAATGGATTAATGACTATCTGTCTGAGTTCTTGAAGGCCAACCCGAAAGGCGGTGCCTTTGTTCAAACGGAGAAAGATATTGTTAATCTCATTTCAGATGGTGAAGATATTATTATGCACACTGACGCATCTGTCATGGGTACGTAAAGAAAATTCGGTATTGGAATAGTTTTGCGTGATAAACAGGGGCATCTCAAGCTGGTGAGAAATCTATCTTCTCAGGCTGGTAACTCTTCGTTGGAAGCGGAAGCAATAGCGGTGCTTGAAGGGATGCGTCTGGCTAGATCTTTGAATGTGCAACAATTCACTGTGTTGTCTGATTCTTTGACTTTGATAAATTTGATCAATGAGAAGATTCAGGGGGAGGCCTATGTTGCTGCGACTCTCTAG

mRNA sequence

ATGATGAAGTGTCAAGAGGCCTCATTGTCAAATGTGGAAAAGGAGACTACTTGGTGGAATAGGGTGTGGAAGATGAGAGTGCCTAGCAAAGTGAAAATTTTCTTCTGGAAAACTGTTCACAACTCTATCCCAACTATGGTAAACCTACGGAATCATCATGTATCGGTTAACGGGAATTGCCCGGTTTGCCAGGAGGAGATGGAGACTTCAGACCATGCCCTCTTTCAGTGTACGAGGGCTCGTGAGGTATGGGACCTTCTTTATCCACCAATGATGAGGAATTTATGGGTTCATATGGATATTAAAGACTACTGGTTGAGTTTGGCTGACAATCCAATGGAGGTCTTAGAGCGTATTTGTGTGGGGACCTGGTCAATTTGGAACGACAGGAATAACTCGTTACATCAGTGTCAAATCCCTAATCCAAAGCTTAGATGTGAATGGATTAATGACTATCTGTCTGAGTTCTTGAAGGCCAACCCGAAAGGCGGTGCCTTTGTTCAAACGGAGAAAGATATTGTTAATCTCATTTCAGATGTTTTGCGTGATAAACAGGGGCATCTCAAGCTGGTGAGAAATCTATCTTCTCAGGCTGGTAACTCTTCGTTGGAAGCGGAAGCAATAGCGGTGCTTGAAGGGATGCGTCTGGCTAGATCTTTGAATGTGCAACAATTCACTGTGTTGTCTGATTCTTTGACTTTGATAAATTTGATCAATGAGAAGATTCAGGGGGAGGCCTATGTTGCTGCGACTCTCTAG

Coding sequence (CDS)

ATGATGAAGTGTCAAGAGGCCTCATTGTCAAATGTGGAAAAGGAGACTACTTGGTGGAATAGGGTGTGGAAGATGAGAGTGCCTAGCAAAGTGAAAATTTTCTTCTGGAAAACTGTTCACAACTCTATCCCAACTATGGTAAACCTACGGAATCATCATGTATCGGTTAACGGGAATTGCCCGGTTTGCCAGGAGGAGATGGAGACTTCAGACCATGCCCTCTTTCAGTGTACGAGGGCTCGTGAGGTATGGGACCTTCTTTATCCACCAATGATGAGGAATTTATGGGTTCATATGGATATTAAAGACTACTGGTTGAGTTTGGCTGACAATCCAATGGAGGTCTTAGAGCGTATTTGTGTGGGGACCTGGTCAATTTGGAACGACAGGAATAACTCGTTACATCAGTGTCAAATCCCTAATCCAAAGCTTAGATGTGAATGGATTAATGACTATCTGTCTGAGTTCTTGAAGGCCAACCCGAAAGGCGGTGCCTTTGTTCAAACGGAGAAAGATATTGTTAATCTCATTTCAGATGTTTTGCGTGATAAACAGGGGCATCTCAAGCTGGTGAGAAATCTATCTTCTCAGGCTGGTAACTCTTCGTTGGAAGCGGAAGCAATAGCGGTGCTTGAAGGGATGCGTCTGGCTAGATCTTTGAATGTGCAACAATTCACTGTGTTGTCTGATTCTTTGACTTTGATAAATTTGATCAATGAGAAGATTCAGGGGGAGGCCTATGTTGCTGCGACTCTCTAG

Protein sequence

MMKCQEASLSNVEKETTWWNRVWKMRVPSKVKIFFWKTVHNSIPTMVNLRNHHVSVNGNCPVCQEEMETSDHALFQCTRAREVWDLLYPPMMRNLWVHMDIKDYWLSLADNPMEVLERICVGTWSIWNDRNNSLHQCQIPNPKLRCEWINDYLSEFLKANPKGGAFVQTEKDIVNLISDVLRDKQGHLKLVRNLSSQAGNSSLEAEAIAVLEGMRLARSLNVQQFTVLSDSLTLINLINEKIQGEAYVAATL
Homology
BLAST of Lag0041335 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 123.6 bits (309), Expect = 2.4e-24
Identity = 76/268 (28.36%), Postives = 117/268 (43.66%), Query Frame = 0

Query: 2    MKCQEASLSNVEKETTWWNRVWKMRVPSKVKIFFWKTVHNSIPTMVNLRNHHVSVNGNCP 61
            +KC   S S      T WN +WK+ VP+K+KIF W++ H  IPT  NL    +     C 
Sbjct: 1116 LKCNATSAS-TNYRGTQWNSIWKLTVPTKIKIFIWRSAHEHIPTAQNLLLRGIGELPACT 1175

Query: 62   VCQEEMETSDHALFQCTRAREVWDLLYPPM-MRNLWVHMDIKDYWLSLADN-PMEVLERI 121
            +C +  E+  HA F C RAR++W  L+P +   +   ++   + W SL +    + L   
Sbjct: 1176 ICGDRRESIIHAFFHCKRARQIWRTLFPFLTCLSAEDNISFLELWSSLTEQLEPKDLNLA 1235

Query: 122  CVGTWSIWNDRNNSLHQCQIPNPKLRCEWINDYLSEFLKA-------------------- 181
             +  W IWNDRN+ +H  Q+   + +CEW+  +L    +A                    
Sbjct: 1236 AITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFLDSHSQAQMSNYSPRTQSNHRPVVQYW 1295

Query: 182  NPKGGAFVQTEKDIV-----NLISDVLRDKQGHLKLVRNLSSQAGNSSLEAEAIAVLEGM 241
             P     ++   D            ++RD    L    ++      S L AE   +LEG+
Sbjct: 1296 RPSSSVSLKLNTDAACRGASTSFGCIIRDSSCSLVAATSIRVPFPLSPLLAEIRCILEGL 1355

Query: 242  RLARSLNVQQFTVLSDSLTLINLINEKI 243
            + A + N     V SDSL  I LI  +I
Sbjct: 1356 KFAAASNFTHLEVESDSLLAIQLIRNEI 1382

BLAST of Lag0041335 vs. NCBI nr
Match: XP_030479077.1 (uncharacterized protein LOC115696311 [Cannabis sativa])

HSP 1 Score: 118.2 bits (295), Expect = 1.0e-22
Identity = 82/282 (29.08%), Postives = 133/282 (47.16%), Query Frame = 0

Query: 3    KCQEASLSNVEKETTWWNRVWKMRVPSKVKIFFWKTVHNSIPTMVNLRNHHVSVNGNCPV 62
            K  E+S S++     WWNR+W +++P KVKIF W+ +++++PT VNL +  +SV  +C +
Sbjct: 829  KINESSTSDLNH--GWWNRLWALKLPKKVKIFAWRVINDALPTQVNLMHRKISVVASCSL 888

Query: 63   CQEEMETSDHALFQCTRAREVWDLLYPPMMRNLWVHMDIKDYWLSLAD-NPMEVLERICV 122
            C    E+S HALF CTRA++VW L +      L   M+  + + S+A     +VL +I  
Sbjct: 889  CNCPRESSGHALFFCTRAQQVWSLAHVFSPNPLISRMNGFEIFSSIATVKQNDVLAKILC 948

Query: 123  GTWSIWNDRNNSLHQCQIPNPKLRCEWINDYLSEFLKAN--------------------P 182
              W IW +RN  +H  +     + C +++ Y+ +FL A+                    P
Sbjct: 949  LMWCIWTERNKEIHGSKPKPTGVICSFVDMYVQQFLLAHAKQVSMDSSCNNFDNAPATAP 1008

Query: 183  KGG--------AFVQTEKDIVNL------------ISDVLRDKQGHLKLVRNLSSQAGNS 242
            +G         A   T    +N+            I DV+RD  G +    +       S
Sbjct: 1009 QGSHPQASSVWALPPTGSYKLNIDVAFNDEGSVIGIGDVVRDYFGDVVGALSKPLIGRCS 1068

Query: 243  SLEAEAIAVLEGMRLARSLNVQQFTVLSDSLTLINLINEKIQ 244
              E EA A+L  ++ A  L +Q   + ++SL   N IN+  Q
Sbjct: 1069 VREMEATALLHSLQWALQLGLQMDYIETNSLIFANAINKHSQ 1108

BLAST of Lag0041335 vs. NCBI nr
Match: XP_030943029.1 (uncharacterized protein LOC115967981 [Quercus lobata])

HSP 1 Score: 116.3 bits (290), Expect = 3.8e-22
Identity = 77/266 (28.95%), Postives = 115/266 (43.23%), Query Frame = 0

Query: 5   QEASLSNVEKETTWWNRVWKMRVPSKVKIFFWKTVHNSIPTMVNLRNHHVSVNGNCPVCQ 64
           +E   ++    T  W R+W+ +VP K+KIF W+T  N +PTM NL +  V  +  CP+C 
Sbjct: 33  EEGESTSSSSRTLLWKRIWQQKVPLKIKIFAWRTCVNGLPTMQNLNHRGVHCSSFCPLCD 92

Query: 65  EEMETSDHALFQCTRAREVWDLLYPPMMRNLWVHMDIKDYWLS-LADNPMEVLERICVGT 124
           + +ET+ HAL  C  A+  W   Y   +     + D  D  L  +A      LE     T
Sbjct: 93  KAIETTAHALLHCDHAKMTWAFWYNCPVDLSTSYCDCVDIALDFIAKGSPNDLELFFAIT 152

Query: 125 WSIWNDRNNSLHQCQIPNPKLRCEWINDYLSE-------------------------FLK 184
           WSIW +RN ++H+     P    E     L+E                         F+K
Sbjct: 153 WSIWWNRNQAIHEDSGSPPIHAWEMAGGVLAEYKAACSCPRLSQSIPQSKWKAPPMGFIK 212

Query: 185 ANPKGGAFVQTEKDIVNLISDVLRDKQGHLKLVRNLSSQAGNSSLEAEAIAVLEGMRLAR 244
            N    AF    K  + +   V+RD  G +    N       S   +EA+A+ +G+ LA 
Sbjct: 213 INTDAAAFEDGRKSCIGV---VIRDNMGEVLAASNKVLPTSYSVEISEALAMQDGVLLAT 272

BLAST of Lag0041335 vs. NCBI nr
Match: XP_030970300.1 (uncharacterized protein LOC115990627 [Quercus lobata])

HSP 1 Score: 113.2 bits (282), Expect = 3.2e-21
Identity = 70/241 (29.05%), Postives = 111/241 (46.06%), Query Frame = 0

Query: 5   QEASLSNVEKETTWWNRVWKMRVPSKVKIFFWKTVHNSIPTMVNLRNHHVSVNGNCPVCQ 64
           ++   ++    T  W  +W+ +VP K+KIF W+T  N +PTM NL +  V  +  CP+C 
Sbjct: 71  EDGESTSSSSRTLLWKWIWQQKVPPKIKIFAWRTCVNGLPTMQNLNHRGVHCSSFCPLCD 130

Query: 65  EEMETSDHALFQCTRAREVWDLLYPPMMRNLWVHMDIKDYWLS-LADNPMEVLERICVGT 124
           + +ET+ HAL  C  A+  W   Y   +       D+ D  L  +A      LE      
Sbjct: 131 KAIETTVHALLHCDHAKMTWAFWYNFPVDLSTSFCDLVDIALDFIAKGSSNDLELFFAVA 190

Query: 125 WSIWNDRNNSLHQCQIPNPKLRCEWINDYLSEFLKANPKGGAFVQTEKDIVNLISDVLRD 184
           WSIW +RN ++H+     P    E     L+EF  A     AF       + +   V+RD
Sbjct: 191 WSIWWNRNQAIHEDSGSPPIHAREMAGGVLAEFKAAWEMAVAFEDGRNSCIGV---VIRD 250

Query: 185 KQGHLKLVRNLSSQAGNSSLEAEAIAVLEGMRLARSLNVQQFTVLSDSLTLINLINEKIQ 244
             G +            S+  +EA+A+ +G+ LA  + V      S++L++I  IN+ I 
Sbjct: 251 NIGEVLAASRKVLPVSFSTEISEALAMQDGVLLAAEMEVSHAIFESNALSIIQAINDGIH 308

BLAST of Lag0041335 vs. NCBI nr
Match: XP_023901742.1 (uncharacterized protein LOC112013579 [Quercus suber])

HSP 1 Score: 112.8 bits (281), Expect = 4.2e-21
Identity = 79/252 (31.35%), Postives = 121/252 (48.02%), Query Frame = 0

Query: 19   WNRVWKMRVPSKVKIFFWKTVHNSIPTMVNLRNHHVSVNGNCPVCQEEMETSDHALFQCT 78
            W R+W+++VP K+KIF W+T  N +PTM NL +  V  +  CP+C + +ET  HAL  C 
Sbjct: 893  WKRIWQLKVPPKIKIFAWRTCVNGLPTMQNLNHRGVHCSSFCPLCDKAIETITHALLHCE 952

Query: 79   RAREVWDLLYPPMMRNLWVHMDIKDYWLS-LADNPMEVLERICVGTWSIWNDRNNSLHQC 138
             A+  W   +     +L    D+ +  L  +A   +  LE      WSIW +RN ++H+ 
Sbjct: 953  HAKLTW-AFWCNSPVDLSTSCDMVEIALDIIAKGSLHDLELFFAVAWSIWWNRNQAIHED 1012

Query: 139  QIPNPKLRCEWINDYLSEF-----------------LKANPKGGAFVQT-----EKDIVN 198
                P    E     L+EF                  KA P G   + T     + +  +
Sbjct: 1013 SGSPPIQAWELAGGVLAEFKAACLCPALSQALPLSRWKAPPSGYFKINTDAAAFDDERCS 1072

Query: 199  LISDVLRDKQGHLKLVRNLSSQAGNSSLEA---EAIAVLEGMRLARSLNVQQFTVLSDSL 245
             I  V+RD +G   +V   SS+  ++S  A   EA+A+ EG+ LA  + V      SDSL
Sbjct: 1073 CIGVVIRDCRG---VVLAASSKVLSASFPAEISEALAMQEGVLLAAEMEVSHAIFESDSL 1132

BLAST of Lag0041335 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.0e-05
Identity = 22/73 (30.14%), Postives = 38/73 (52.05%), Query Frame = 0

Query: 17  TWWNRVWKMRVPSKVKIFFWKTVHNSIPTMVNLRNHHVSVNGNCPVCQEEMETSDHALFQ 76
           +++N +WK+RVP +VK F W   + ++ T       H+S +  C VC+  +E+  H L  
Sbjct: 286 SFFNCLWKVRVPERVKTFLWLVGNQAVMTEEERHRRHLSASNVCQVCKGGVESMLHVLRD 345

Query: 77  CTRAREVWDLLYP 90
           C     +W  + P
Sbjct: 346 CPAQLGIWVRVVP 358

BLAST of Lag0041335 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.1e-24
Identity = 76/268 (28.36%), Postives = 117/268 (43.66%), Query Frame = 0

Query: 2    MKCQEASLSNVEKETTWWNRVWKMRVPSKVKIFFWKTVHNSIPTMVNLRNHHVSVNGNCP 61
            +KC   S S      T WN +WK+ VP+K+KIF W++ H  IPT  NL    +     C 
Sbjct: 1116 LKCNATSAS-TNYRGTQWNSIWKLTVPTKIKIFIWRSAHEHIPTAQNLLLRGIGELPACT 1175

Query: 62   VCQEEMETSDHALFQCTRAREVWDLLYPPM-MRNLWVHMDIKDYWLSLADN-PMEVLERI 121
            +C +  E+  HA F C RAR++W  L+P +   +   ++   + W SL +    + L   
Sbjct: 1176 ICGDRRESIIHAFFHCKRARQIWRTLFPFLTCLSAEDNISFLELWSSLTEQLEPKDLNLA 1235

Query: 122  CVGTWSIWNDRNNSLHQCQIPNPKLRCEWINDYLSEFLKA-------------------- 181
             +  W IWNDRN+ +H  Q+   + +CEW+  +L    +A                    
Sbjct: 1236 AITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFLDSHSQAQMSNYSPRTQSNHRPVVQYW 1295

Query: 182  NPKGGAFVQTEKDIV-----NLISDVLRDKQGHLKLVRNLSSQAGNSSLEAEAIAVLEGM 241
             P     ++   D            ++RD    L    ++      S L AE   +LEG+
Sbjct: 1296 RPSSSVSLKLNTDAACRGASTSFGCIIRDSSCSLVAATSIRVPFPLSPLLAEIRCILEGL 1355

Query: 242  RLARSLNVQQFTVLSDSLTLINLINEKI 243
            + A + N     V SDSL  I LI  +I
Sbjct: 1356 KFAAASNFTHLEVESDSLLAIQLIRNEI 1382

BLAST of Lag0041335 vs. ExPASy TrEMBL
Match: A0A803QG02 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 4.8e-23
Identity = 82/282 (29.08%), Postives = 133/282 (47.16%), Query Frame = 0

Query: 3    KCQEASLSNVEKETTWWNRVWKMRVPSKVKIFFWKTVHNSIPTMVNLRNHHVSVNGNCPV 62
            K  E+S S++     WWNR+W +++P KVKIF W+ +++++PT VNL +  +SV  +C +
Sbjct: 748  KINESSTSDLNH--GWWNRLWALKLPKKVKIFAWRVINDALPTQVNLMHRKISVVASCSL 807

Query: 63   CQEEMETSDHALFQCTRAREVWDLLYPPMMRNLWVHMDIKDYWLSLAD-NPMEVLERICV 122
            C    E+S HALF CTRA++VW L +      L   M+  + + S+A     +VL +I  
Sbjct: 808  CNCPRESSGHALFFCTRAQQVWSLAHVFSPNPLISRMNGFEIFSSIATVKQNDVLAKILC 867

Query: 123  GTWSIWNDRNNSLHQCQIPNPKLRCEWINDYLSEFLKAN--------------------P 182
              W IW +RN  +H  +     + C +++ Y+ +FL A+                    P
Sbjct: 868  LMWCIWTERNKEIHGSKPKPTGVICSFVDMYVQQFLLAHAKQVSMDSSCNNFDNAPATAP 927

Query: 183  KGG--------AFVQTEKDIVNL------------ISDVLRDKQGHLKLVRNLSSQAGNS 242
            +G         A   T    +N+            I DV+RD  G +    +       S
Sbjct: 928  QGSHPQASSVWALPPTGSYKLNIDVAFNDEGSVIGIGDVVRDYFGDVVGALSKPLIGRCS 987

Query: 243  SLEAEAIAVLEGMRLARSLNVQQFTVLSDSLTLINLINEKIQ 244
              E EA A+L  ++ A  L +Q   + ++SL   N IN+  Q
Sbjct: 988  VREMEATALLHSLQWALQLGLQMDYIETNSLIFANAINKHSQ 1027

BLAST of Lag0041335 vs. ExPASy TrEMBL
Match: A0A803PKZ1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.1e-22
Identity = 60/165 (36.36%), Postives = 95/165 (57.58%), Query Frame = 0

Query: 6   EASLSNVEKETTWWNRVWKMRVPSKVKIFFWKTVHNSIPTMVNLRNHHVSVNGNCPVCQE 65
           E S S+  ++  WWNR+W +R+P K+KIF W+ ++ ++PT VNL +   S +  C +CQ 
Sbjct: 434 EHSSSSTHRQ--WWNRMWSLRLPKKLKIFLWRFINEALPTAVNLVHRKFSSSNACSLCQC 493

Query: 66  EMETSDHALFQCTRAREVWD----LLYPPMMRNLWVHMDIKDYWLSLADNPMEVLERICV 125
             +TS HA+F+C RA+ VW      ++ P M N     DI  Y ++ A N  E+ + +C+
Sbjct: 494 SWKTSGHAIFRCKRAKAVWQQFQYKIHMPNMGNA-KGFDIFSY-IAAAHNDFELEQIVCL 553

Query: 126 GTWSIWNDRNNSLHQCQIPNPKLRCEWINDYLSEFLKA-NPKGGA 166
             WSIW++RN  +H  +     + C +   YL++F KA  PK  A
Sbjct: 554 -MWSIWSERNKEIHGTKPKPVAVLCSYSASYLAQFHKATTPKHAA 593

BLAST of Lag0041335 vs. ExPASy TrEMBL
Match: A0A803NQ77 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 5.3e-22
Identity = 57/158 (36.08%), Postives = 92/158 (58.23%), Query Frame = 0

Query: 6    EASLSNVEKETTWWNRVWKMRVPSKVKIFFWKTVHNSIPTMVNLRNHHVSVNGNCPVCQE 65
            E S S+  ++  WWNR+W +R+P K+KIF W+ ++ ++PT VNL +  +S +  C +CQ 
Sbjct: 1119 EHSSSSTNRQ--WWNRMWSLRLPKKLKIFLWRFINEALPTAVNLAHRKISSSNACSLCQC 1178

Query: 66   EMETSDHALFQCTRAREVWD----LLYPPMMRNLWVHMDIKDYWLSLADNPMEVLERICV 125
               TS HA+F+C RA+ VW      +Y P M N   + DI  Y ++ A N +E+ + +C+
Sbjct: 1179 SWVTSGHAIFRCKRAKAVWQQFQYKIYMPNMGNAKGY-DIFSY-IAAAHNDLELEQIVCL 1238

Query: 126  GTWSIWNDRNNSLHQCQIPNPKLRCEWINDYLSEFLKA 160
              W+IW++RN   H  +     + C +   YL +F KA
Sbjct: 1239 -MWNIWSERNKETHGSKPKPVDVLCSYSASYLDQFHKA 1271

BLAST of Lag0041335 vs. ExPASy TrEMBL
Match: A0A803NL40 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.0e-21
Identity = 60/161 (37.27%), Postives = 88/161 (54.66%), Query Frame = 0

Query: 3   KCQEASLSNVEKETTWWNRVWKMRVPSKVKIFFWKTVHNSIPTMVNLRNHHVSVNGNCPV 62
           K  ++S S+  ++  WWNR+W + +P KVKIF W+ ++N++PT  NL+   +S    C +
Sbjct: 761 KLNDSSPSDSNRQ--WWNRLWSLSLPKKVKIFVWRVINNALPTAPNLQYRKISPTTACSL 820

Query: 63  CQEEMETSDHALFQCTRAREVWDLL----YPPMMRNLWVHMDIKDYWLSLADNPMEVLER 122
           C    E+  HALF C+R R+VW        P  ++NL    DI  Y L+   N +E LE+
Sbjct: 821 CNYHWESVGHALFSCSRPRQVWSQAKFNHLPLNIKNLH-GPDIFSY-LTAGCNNVE-LEK 880

Query: 123 ICVGTWSIWNDRNNSLHQCQIPNPKLRCEWINDYLSEFLKA 160
           I    W IW +RN  LHQ +    K+ C +   YL  F KA
Sbjct: 881 ILCLVWCIWTERNKELHQTKPKQAKVICTFAETYLQRFYKA 916

BLAST of Lag0041335 vs. TAIR 10
Match: AT2G02650.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 69.7 bits (169), Expect = 3.8e-12
Identity = 63/267 (23.60%), Postives = 103/267 (38.58%), Query Frame = 0

Query: 22  VWKMRVPSKVKIFFWKTVHNSIPTMVNLRNHHVSVNGNCPVCQEEMETSDHALFQCTRAR 81
           +WK+ V  K+K F W+ V  ++ T   LR+ ++  +  C  C  E ET  H +F C   +
Sbjct: 37  IWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQ 96

Query: 82  EVWDLLYPPMMRNLWVHMDIKDYW---LSLADNPMEVLERICVGT-------------WS 141
            VW             ++ I + W    S  DN   +++     T             W 
Sbjct: 97  SVWRS----------ANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFWIMWR 156

Query: 142 IWNDRNNSLHQ--CQIPNPKLR------CEWIN------------------DYLSEFLKA 201
           +W  RN  L Q  CQ P+ + R       EW+N                      +  + 
Sbjct: 157 LWKSRNVFLFQQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQTSRRDSSQW 216

Query: 202 NPKGGAFVQ-------TEKDIVNLISDVLRDKQGHLKLVRNLSSQAGNSSLEAEAIAVLE 240
           NP    +V+       T+          +R+  GH+ L  N   Q+   SL AEA+  L 
Sbjct: 217 NPPPEGWVKCNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHAEALGFLH 276

BLAST of Lag0041335 vs. TAIR 10
Match: AT3G25270.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 65.9 bits (159), Expect = 5.5e-11
Identity = 35/121 (28.93%), Postives = 57/121 (47.11%), Query Frame = 0

Query: 21  RVWKMRVPSKVKIFFWKTVHNSIPTMVNLRNHHVSVNGNCPVCQEEMETSDHALFQCTRA 80
           ++WK++   K+K F WK +  ++ T  NL+  H+  +  C  C +E ETS H  F C  A
Sbjct: 17  KIWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYA 76

Query: 81  REVWDLLYPP--MMRNLWVHMDIKDYWL---SLADNPMEVLERICVGTWSIWNDRNNSLH 137
           ++VW     P   +R   + M+ K   L    LA+   ++        W +W  RN  + 
Sbjct: 77  QQVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQLVF 136

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158377.12.4e-2428.36uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_030479077.11.0e-2229.08uncharacterized protein LOC115696311 [Cannabis sativa][more]
XP_030943029.13.8e-2228.95uncharacterized protein LOC115967981 [Quercus lobata][more]
XP_030970300.13.2e-2129.05uncharacterized protein LOC115990627 [Quercus lobata][more]
XP_023901742.14.2e-2131.35uncharacterized protein LOC112013579 [Quercus suber][more]
Match NameE-valueIdentityDescription
P0C2F62.0e-0530.14Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... [more]
Match NameE-valueIdentityDescription
A0A6J1DX301.1e-2428.36uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A803QG024.8e-2329.08Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803PKZ14.1e-2236.36Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803NQ775.3e-2236.08Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803NL402.0e-2137.27Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G02650.13.8e-1223.60Ribonuclease H-like superfamily protein [more]
AT3G25270.15.5e-1128.93Ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 180..243
e-value: 2.3E-9
score: 37.1
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 9..84
e-value: 2.5E-20
score: 73.0
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 163..249
e-value: 1.6E-5
score: 26.9
NoneNo IPR availablePANTHERPTHR46736:SF6SUBFAMILY NOT NAMEDcoord: 13..232
NoneNo IPR availablePANTHERPTHR46736FAMILY NOT NAMEDcoord: 13..232
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 180..242
e-value: 2.67701E-9
score: 51.9312

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0041335.1Lag0041335.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity