Lag0041315 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0041315
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	chr13: 15461354 .. 15469259 (-)
RNA-Seq Expression	Lag0041315
Synteny	Lag0041315

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAAATGAAGTCTGAAAGGTAAAGTGAATTTTTCATTTTACACTTGTGTCATGTGTTGCCAAAACGTGTAACAAAAGCAATCTGAGTGGGATTTGACAACACGCATAACTCACTCACACAGTCTCTAAATTTTGTTATAAAAAAGGTAATATTCAACATTAAATAAAGTTCCAAATTTGTTTCAAAACTCAATATTTGACCCATTATAAATACATGATTCATTTATCATTATATATTTAGACACGACTTAGCATTTTTTTTAATGCAAATTTCTAAAACTAAAAAAAAATATATATACACACAAAATTAGATATATGATTGAAAATTTAGAGAAAGACCAAAAAATTAAAGTAATTACTAAAAATGAGATTTAATCCTAAAAGTTGGAGAAAAACTAAAATCAAGACAGATAAAATCATGCAGCATATTTTTAACATTATTATTTAAGTTGGCAAAATTGGAATGAAGGAGTAGTTGGACTATTATTTTCATTTGGCTTGCATGAAGAGTTGGTAAAATAATTTTTTTTTTATTTTTTTATTATTTTTATTTTTTATTTTTTATTTTTGATTGCCTTATTTGACCACATGACCTTTTTGTTTTCATTAATTTATAAATAGCCCCTAACCCAATTTTAAATTTTGCACTCTCAACTTTTTTTCTTTGCTTGTGAAAATTGGAAATGGAAGGGGGGATGGGCTCTCATGATCAGCCAAAAGCATTTTTTATTTTGCATAACATTCCACCAATCAATCAATTTGACTATTGGGTCTAAATATTTTCCTTTACTTTTATCACATTAATTTTCTCTTGCTCTTTATTATTTTTTCCCCTTCTTTTCAAGAATGATTTCAAGTAACTCTACATTTTTTTACATTTATTTTCTCCCCTTTTTTTTTCAGAGTATTCCCCTAATAAATGAGGATCCAATAGGACATTTGACTTCTACTTATGGACAAGTAGGCGAATGATCTAAATTATTTAATTAATTAGAGTTTAGTTTAGTTTACTACTCTTTTAAGATAAATTTAAAAATTTTAGTCTCAATGTGCAGATAGTTGATGTAATTTTAACGAGCCTTCTGAATTTGTCTGGGAGATTAAGTGACCTCTATATTAACTTGAGGAATGAAGGTTATCTTCAAATTCAATATCCTCTAGGTGCTTGGGATGCTGATTCATTCGCACAACTATTGCGTAAGTTTATTAGTTAAACTTCTCCTATTCTATTGTATTATTGAAAAGTTGATCGGGTCAAATTGATTCTAAGTAACAAAACCTAATTAAACGCTACCAATTGAAATTATATAATTTCAATTTTATACCTTAGAAAACCTAATTGATAATCTATTTTCTTTTTCTCAAGTTGGGACCCATTAATTTTTTTTCCTTGCAAAGTGATCTATGAGTTATTTATGGTCTTATATTTATCTTTACATTTTTTTTTGTTATCATTTTTATAAGGTCGACCAACGTCCAACTATTAATCTTCTCGATTTATTTTGTTAAAATGATTATGGATGCAGGTGATGCACTTAATGAATATAGGGCTCCACAAGACAATGATGCAATTGTTTGGCATACAACAAATTTGCAATCTTTGTTTGATCGATTTCCTCCGAATCATCAAGTACTAGGTGCGTATGGTTATGTAATCAAATCACAATTTTTATAGTTCAACCGTTGCAAGGTCGAGGAGATCAAACATCTTTAGAATGGTAATAATTGGTGTCTTAAGGCCTGAGTCATGCTCAGATCGACCACAGATCTCATTATTTCTATTTGTGTAAAATGTTAAAACTAACTGCAATAGTTGAAAGTTGTAGGTTTTTTGCCCGGTCAACATGAGGTAGACAGACATGAAATTGACATCCATGACCTTTTGGTTGATCCGAGGGAAAATTTAGTATTTGTGGTATGTATATATGACTTAAAGTGAAAAATAATTCTTTTTTCTCAACTAATTTTAGATTAATCTTAATTATATTATTATTGGATTTAGATTGACAACTTTCAAAACTATAGAGAGCTTGAGGAACAAATTGAGCAATACATTAAAGGTACTAAATCATTTAACTTCTTTTTTTCTTGATACAACTAAATGAGAACATAACTTTACAAATAATTTATATCAAAAACTAAATGAGAAATTCATACATTTTTCTATTATGTAAGCTTCTTTTATTATTATTTTATTTTATTTTTTTTTTTGTAGTTTCAAATCCTGGAACATCTTCAGATGTGTTCATTCAGATGATTTGTCAAGAATGTATGAGAAAATGGAACCTCATATAAAATCTAATATATTTTTGGATGAATATATAATGCTTCATGTTTTTTTTATTTTTATTTTTTTAAGTTAAGACTTTTTCTTTCAATTAATATATATGTAAGCTAAATGTTTCTTTAGAAGAACATATCTAGTGCTTGATGTGTTGTGGTTTTCAAGCGAATGCTTTTTATTTCAATAAATATTTAGTGCGCTTTATTTTCTTATTACTCATAATTCCAAATCTATGAATTATGTTATCTAAATTCAAAAGTTTGAGAACAATTTTAATTTTTCAACAAAATAAAATGCGACTAGTAGTTAATTTCTAAATCATACGATGAAAATAGAATATAGAGACTAAATGTTATATTTTTTTTCGTGCATGGTCAAATTAAAATGTATTTAGAAGTAACTACATATTTTTTTTTAATAAATTAAGAAATCATATTAATGATAAATTATAGAAGACTAACGGCATTGATTATAGAACTAAAAAAAAAAAAACCATTCATTATATAGACATTTCAAATAACCTAGCCTTATAATATTTATTTTAAATTTGATACTAATATAGTTTATAAACTACCATGGCAAATCTTTATTCTCATATTTGTTATTTAGAAATCAAAATAATAATAATAATAAATAAATAAATAAATAAATAAATGTATGAACTATTTTGACTCAATTATGAAGCTAACTAAGAGTCTATTTGGAATACATTTTAATTTAAATGTTTTTCAAGAATGCATTTTTTTAAAAACATTTTGTATAAAAATTGTTTAAAATATAGACACTCGTATGTTTGGTTGCATTTACTCACAAATGTTTTTATACACAAGTTATTGTTTACTTAAGAAGATTTTTTTTAAAAGTTGGTTTCAAGTGTTTCTCTCAAACGGTTTATTTATCCATCTCATTTTCTAATAAGTCATTTTTAGTGATGGCCAAACACTACAAATTTTTTCAAAATGAATTATTTTCAAAATTAAACACTCGAAAATGTAAACCAAACACACCCTAAGATTTGCAAGTAACTACAAGCTATGTATAGATATAATATATCGCAAATTTTTTATTTGAGTATCCATGAATTTTAAGATGTTGAATAATAATAATAGAGATCTACTAGACTAGACCAGACAAAAAAAAAAAGAAAAAAAAAAATCAAGCACACTTATTAGACACTCTTAAACTTTAGGGACATATTTGAGTATCCATGAATTTAAAGATTTATGTGGCACTTTTTAAATTTTAGGGATCAAATAGACTTAATCTTAAAAGTACAAAGACTTAACTTGTAATTTTACGAGAAATATATTAATAATAAAGGCCAAATAGGTAAAATTATACCTAGACACGAAACTAAAAATTCAAGGACTTATAAGACGAAAATTGAAAATTTAAAGATTTTCTTAACACTTTTTAAAATTGAAAGGTCTTTAAGATGCAATAACGAAAGTGAAAGTTAAAGGAACCAAACTTATAATTTAACATATATGAATAAAATCCATCGTTTAATCCTTGATATATATATTTTGATGAAAAAAAAAAGAAGTGATTACTAAAAATGGGACTTAATCATAAAAGTGGTAGGAAAACTAAAATCAGCACATAAAATAATACAGCATGTTTTTAACATTTATTGAAGTAGCAAAATTGGAATGAAGGAGTAGTTGGTACTACAATTATTCATTTGGCTTGCATGAAGAGTTGGTAAAATAAAATCATACCATTAATTAATCTTATTGCCTTATTGACCACATGACCCTTTTATTTTCATTAATTTATAAATAGTCCCTAACCCAATTTAGGTCAGGTATGGGGAAGAAAAATGTAAATTAATTTTTAGAAATTATCTTTATATTTTGTTAAATTAATCTATTCTATTTAGGTGTATAATTTGTTAAGATTTTGTATAATTTTCTGTTTTACTTTTACTTTTCTGTAACAAAATACAAAATCTTAACTTCTCCTAACAAATTATGCAAGAATTACTGTAACTAAATACAGAATCTTAACCTCTCTTGACAAAGTATACAAAGGTAACAAAATTATAATTATTTCTAATAATTATTAATTTATAAATAGCCCTTAACCCTAATTTTTTTACTTTTGCTTGTGAAATTTGGTGATGGAAGAGGGAGTGGCTCTAATGATCACATTGATCATCCAAAAGCTTTCTTTATTTTTCATAACATTCCTCAACTCCTACCTGGCTATTGGGTCTTCTAAATTTTTTCCCTTCTTTATTTTCTTTTTTTTTATACCAAATTTTGAAGATTATTATAAGTTAATTAAAAATAATGTGTGTGGTTTTCACTTAATTATTTCAACTAACTATACATTTATTTTCTTTCTTTTTCTTCAGGTCATCCCTCCCATGAATGAGAATCCAATAGAGCATTTGGATTCTACTTATCGTCATGTGGGTGAATGACCTAAATTTAATAAATCAAAGTTTAGTTTACGTTCGAGTTTTCTTTAAATTTTGTTTTTCTTTGTTGATATGATAGGCAGGTAGTAGATGCAATTTTTACGAGTCTTTTGAATTTTCTAGGGAGAATAGGCGGCCTCTATATTAACTTGAGGAATCAAGGTTATCTTCAAATTCATTCTCCTCGAGCTTTTTGGGATGCTGATTCATTTCGAGAGATGTTGCGTAAGTCTATAGTTAATTAAACTTCTCATTTACCTAAAAGTTCATCGTATGAACCGACAATTCTAACTCGTCAATTTTGAACTAATTATTTGAAATTTACACCTTAGAAAACCTAATTGATTATTGGCTGTTTGATTTGGGAACCATTGTTTTTTTTTTTTTTAATCATTTTTCTTGCAAAGTTTGTGTTCTTTATAGTTTTTGTATTTATCTTTATAGTTTTATTTGAATGCAGGTGAGGTACTTAGTGAGCATAGGATTCCACAAGAGAATGATGCAATTGTTTGGCATAGAACAAATTTGCAATCTTTGTTTAATCGTTTTCCTCAAGATCGTCGAATAATAGGTACATTTATATTACGTAATCAGTTCCTTAGAAAGTTGTAGATTTGAATCTCGAACTTTTTTTTTTTTTAATAAAAAAAATTAACTTAAAAAACTTAATTGAAACTAACAGATAATTTTTTATGAATGTTTATAGGTTGTTTGCCTGATGACCAGGATGGAAATAGACAAGAAGTTAACATCCATGACTTTTTGCGATTTTTGGTTCATCCAAGTGAAAATTTAATATTTGTGGTATATATATAAGTATGAATTAAAAGTAAAATTTTATTTTCCCAACTAAAATTAAGATTGAATAATAATCTTCTTTTTCTATTTATTTCGGTTTAGGTTGGTGACTTTCACAACTATAGAGAGCTTGAGAGTAAGATTGATCAACACGTCAAAGGTACTAAGGGTCCGTTTGGAATACATTTTGATTTAAACGTCTTTCAAAAATGCATTTTTTAAAAAAACATTTTGTATAAAAATTGTTTAGAATTTAAACATTCATATGTGAGGTGTTTTTATACACAAGTTATTGTATACTAAACACTCTTTTTAAAAAAGTCGGTTCTAAGTGTTTCTCTCAAAATGGTTTATTTGTCAATCTCAACAATAGAAATTTTTCCAAAATGATTGTTTTTCAAAACTAAACATATTGAGGATCTCACATTGAAAAGATTAGTGGAGAACTCACAATATATAAGCTACGGGTCACTCCACTCATTATCATTGGTGGGTTACAATGTTTCACTTCTTTCTCCCTACATACTAAATTTGATGTGATAGTAAAAAATGTTTTATTATTATTTTTTATTTATTTAAAAAGTACTTGAAAATGAATTAGTTATGGTATTAAAAAAAACAAAATCTATCATGTAATTTCGTTTTGCTTGTTGTTTTTGCAGTTTCAGATCCTGGAACACCTACAAATTTGTTTGTCCAGATCATTTGTCAAGAATGTCAACGAAGGTGGAACCTTATATAAAATCTAATATATATATATTTGGACGAACCTCGAGTGCTTAATGTCTAAACTTTTCCTTTCAATAAACATTGCTTAAGCTAATTGAGTTAAACTTTTGATTTCAATAAATATTTCTAATAGAAGGTCATTTATCTGTTGCTTTTCTTGGTCTATTTATCTTGTGTTTTGGGTTTTATTATTCAGTCTCTCGGTTAGGACATGTGTCCTTCTTCTCCCTTTAATACCCTAGTTTGGCTACTCTGTAAAGTTATGAACAATATAGCCGTTTGCGGCACATCAATCCATTCTCTCAGATTTCCTTTTTATATGGTATCAGAGCTTCTCGCTCCTTTCCGATGACGACAGGTGAATCTTCTTCCTCATCTTCTTCAACCTCTTCAACCACGCCGGTAATCTCTCCTAACGTTACCCCTGTCATTACGCCATTAAACCAGTCGATTAATCCTCTCACTCAACCTCCAAATCAACCTCTCAGTCCTAATATCACTCCTCGCCCACCGCTTCAACCCCAACCGCAGCAACCTCAACATTTCGCCCACCTCAACAATCGCAACCTTCCATTTTTCCAAGCAACCTCAATCCCCTGTCTTCCCCCAGCAACCTCAAGTCTTTTATCAACAAGCCTATGCCCACCCCTTTTATCCCAACCAATTTCCTCGACAGAACCTGCCGACTTTTTTCCCCAATCCTAACCCTTTTCTCCAGCAGCTTACCCCAGTCTCAGCCTCTCAACTCTTTTCCTACTCCTATTTCCCCAAATCCGTATCCCACATTACCACAACCTCTATCAGTCAAGCTCAACGATACCAACTTCCTTCTCTGGAAGAATCAACTATTGAACGTCGTATTAGCAAATGGGTTGAACGACTTTCTGGATGGATCCATTCCAGCACCTGCAAAATTTCTTGATGAACAACAACTACAACTGAACCCGGAGTTTCTTCTATGGGAAAGGTACAATAGATTTATAATGTGCTGGATGTATTCGTCTTTGTCTGAGGAGAAAATGGGGAGATAGTTAGTTTTGAAACTGCTGCTGAGATTTGGAATTCTTTAAAAAGATCTTATGACTCCAAAACTACTGCTAGAATTATGGGTTTGAAAACCCAACTCCAAAAGATTAAGAAAGATGGCCTCTCTGTTAGTCAATACCTAGCTCAAATCAAAGATGTCGCTGATAAGTTTTCTGCAATAGGTGAACCCATATCCTATCGAGATCACCTAGCCCATATTTTGGATGGTCTTGGTAGTGAATACAATCCGTTTGTGATAACCATTCAAAATAGATCCGATAATCCCTCTCTTGAAGATGTTAGGAGTCTCTTGTTGGCTTATGAGGCTAGATTAGAGAAGCAAACTGTTGTGGAACAATTAAATATGGCCCAAGCGAATCTGAGTGCTCTCCAACTGAATAACAGCCGCCGACCAGCCTCTAGAAATCCAACTCCAGCCACTAGAACTCCCTTCAATCCATCTACTTTTCCATCTTTTTCTAGTTCCACCGCTGCTCCTTTTTCTAATAGTCTTTTAGGTAAGCCTCAATCTCAACCTATCCAAAAATGGCCCCAAGATCCTCCTCCAATAAGCCTCAATGCCAAATATGTGGCAAATTTGGGCATACCGCTCTCATTTGCCATCATCGGACCAATTTAG

mRNA sequence

ATGGAGGAAATGAAGTCTGAAAGTCTCAATGTGCAGATAGTTGATGTAATTTTAACGAGCCTTCTGAATTTGTCTGGGAGATTAAGTGACCTCTATATTAACTTGAGGAATGAAGGTTATCTTCAAATTCAATATCCTCTAGGTGCTTGGGATGCTGATTCATTCGCACAACTATTGCGTGATGCACTTAATGAATATAGGGCTCCACAAGACAATGATGCAATTGTTTGGCATACAACAAATTTGCAATCTTTGTTTGATCGATTTCCTCCGAATCATCAAGTACTAGGTTTTTTGCCCGGTCAACATGAGGTAGACAGACATGAAATTGACATCCATGACCTTTTGGTTGATCCGAGGGAAAATTTAGTATTTGTGGTCATCCCTCCCATGAATGAGAATCCAATAGAGCATTTGGATTCTACTTATCGTCATGTAGTAGATGCAATTTTTACGAGTCTTTTGAATTTTCTAGGGAGAATAGGCGGCCTCTATATTAACTTGAGGAATCAAGGTTATCTTCAAATTCATTCTCCTCGAGCTTTTTGGGATGCTGATTCATTTCGAGAGATGTTGCGTGAGGTACTTAGTGAGCATAGGATTCCACAAGAGAATGATGCAATTGTTTGGCATAGAACAAATTTGCAATCTTTGTTTAATCGTTTTCCTCAAGATCGTCGAATAATAGGTTGTTTGCCTGATGACCAGGATGGAAATAGACAAGAAGTTAACATCCATGACTTTTTGCGATTTTTGGTTCATCCAAGTGAAAATTTAATATTTGTGGTTGGTGACTTTCACAACTATAGAGAGCTTGAGAGTAAGATTGATCAACACGTCAAAGTTTCAGATCCTGGAACACCTACAAATTTGTTTGTCCAGATCATTTGTCAAGAATGTCAACGAAGAGCTTCTCGCTCCTTTCCGATGACGACAGGTGAATCTTCTTCCTCATCTTCTTCAACCTCTTCAACCACGCCGGTAATCTCTCCTAACGTTACCCCTGTCATTACGCCATTAAACCAGTCGATTAATCCTCTCACTCAACCTCCAAATCAACCTCTCAGTCCTAATATCACTCCTCGCCCACCGCTTCAACCCCAACCGCAGCAACCTCAACATTTCGCCCACCTCAACAATCGCAACCTTCCATTTTTCCAAGCAACCTCAATCCCCTGTCTTCCCCCAGCAACCTCAATCAAGCTCAACGATACCAACTTCCTTCTCTGGAAGAATCAACTATTGAACGTCGTATTAGCAAATGGGTTGAACGACTTTCTGGATGGATCCATTCCAGCACCTGCAAAATTTCTTGATGAACAACAACTACAACTGAACCCGGAGTTTCTTCTATGGGAAAGATCTTATGACTCCAAAACTACTGCTAGAATTATGGGTTTGAAAACCCAACTCCAAAAGATTAAGAAAGATGGCCTCTCTGTTAGTCAATACCTAGCTCAAATCAAAGATGTCGCTGATAAGTTTTCTGCAATAGGTGAACCCATATCCTATCGAGATCACCTAGCCCATATTTTGGATGGTCTTGGTAGTGAATACAATCCGTTTGTGATAACCATTCAAAATAGATCCGATAATCCCTCTCTTGAAGATGTTAGGAGTCTCTTGTTGGCTTATGAGGCTAGATTAGAGAAGCAAACTGTTGTGGAACAATTAAATATGGCCCAAGCGAATCTGAGTGCTCTCCAACTGAATAACAGCCGCCGACCAGCCTCTAGAAATCCAACTCCAGCCACTAGAACTCCCTTCAATCCATCTACTTTTCCATCTTTTTCTAGTTCCACCGCTGCTCCTTTTTCTAATAGTCTTTTAGGTAAGCCTCAATCTCAACCTATCCAAAAATGGCCCCAAGATCCTCCTCCAATAAGCCTCAATGCCAAATATGTGGCAAATTTGGGCATACCGCTCTCATTTGCCATCATCGGACCAATTTAG

Coding sequence (CDS)

ATGGAGGAAATGAAGTCTGAAAGTCTCAATGTGCAGATAGTTGATGTAATTTTAACGAGCCTTCTGAATTTGTCTGGGAGATTAAGTGACCTCTATATTAACTTGAGGAATGAAGGTTATCTTCAAATTCAATATCCTCTAGGTGCTTGGGATGCTGATTCATTCGCACAACTATTGCGTGATGCACTTAATGAATATAGGGCTCCACAAGACAATGATGCAATTGTTTGGCATACAACAAATTTGCAATCTTTGTTTGATCGATTTCCTCCGAATCATCAAGTACTAGGTTTTTTGCCCGGTCAACATGAGGTAGACAGACATGAAATTGACATCCATGACCTTTTGGTTGATCCGAGGGAAAATTTAGTATTTGTGGTCATCCCTCCCATGAATGAGAATCCAATAGAGCATTTGGATTCTACTTATCGTCATGTAGTAGATGCAATTTTTACGAGTCTTTTGAATTTTCTAGGGAGAATAGGCGGCCTCTATATTAACTTGAGGAATCAAGGTTATCTTCAAATTCATTCTCCTCGAGCTTTTTGGGATGCTGATTCATTTCGAGAGATGTTGCGTGAGGTACTTAGTGAGCATAGGATTCCACAAGAGAATGATGCAATTGTTTGGCATAGAACAAATTTGCAATCTTTGTTTAATCGTTTTCCTCAAGATCGTCGAATAATAGGTTGTTTGCCTGATGACCAGGATGGAAATAGACAAGAAGTTAACATCCATGACTTTTTGCGATTTTTGGTTCATCCAAGTGAAAATTTAATATTTGTGGTTGGTGACTTTCACAACTATAGAGAGCTTGAGAGTAAGATTGATCAACACGTCAAAGTTTCAGATCCTGGAACACCTACAAATTTGTTTGTCCAGATCATTTGTCAAGAATGTCAACGAAGAGCTTCTCGCTCCTTTCCGATGACGACAGGTGAATCTTCTTCCTCATCTTCTTCAACCTCTTCAACCACGCCGGTAATCTCTCCTAACGTTACCCCTGTCATTACGCCATTAAACCAGTCGATTAATCCTCTCACTCAACCTCCAAATCAACCTCTCAGTCCTAATATCACTCCTCGCCCACCGCTTCAACCCCAACCGCAGCAACCTCAACATTTCGCCCACCTCAACAATCGCAACCTTCCATTTTTCCAAGCAACCTCAATCCCCTGTCTTCCCCCAGCAACCTCAATCAAGCTCAACGATACCAACTTCCTTCTCTGGAAGAATCAACTATTGAACGTCGTATTAGCAAATGGGTTGAACGACTTTCTGGATGGATCCATTCCAGCACCTGCAAAATTTCTTGATGAACAACAACTACAACTGAACCCGGAGTTTCTTCTATGGGAAAGATCTTATGACTCCAAAACTACTGCTAGAATTATGGGTTTGAAAACCCAACTCCAAAAGATTAAGAAAGATGGCCTCTCTGTTAGTCAATACCTAGCTCAAATCAAAGATGTCGCTGATAAGTTTTCTGCAATAGGTGAACCCATATCCTATCGAGATCACCTAGCCCATATTTTGGATGGTCTTGGTAGTGAATACAATCCGTTTGTGATAACCATTCAAAATAGATCCGATAATCCCTCTCTTGAAGATGTTAGGAGTCTCTTGTTGGCTTATGAGGCTAGATTAGAGAAGCAAACTGTTGTGGAACAATTAAATATGGCCCAAGCGAATCTGAGTGCTCTCCAACTGAATAACAGCCGCCGACCAGCCTCTAGAAATCCAACTCCAGCCACTAGAACTCCCTTCAATCCATCTACTTTTCCATCTTTTTCTAGTTCCACCGCTGCTCCTTTTTCTAATAGTCTTTTAGGTAAGCCTCAATCTCAACCTATCCAAAAATGGCCCCAAGATCCTCCTCCAATAAGCCTCAATGCCAAATATGTGGCAAATTTGGGCATACCGCTCTCATTTGCCATCATCGGACCAATTTAG

Protein sequence

MEEMKSESLNVQIVDVILTSLLNLSGRLSDLYINLRNEGYLQIQYPLGAWDADSFAQLLRDALNEYRAPQDNDAIVWHTTNLQSLFDRFPPNHQVLGFLPGQHEVDRHEIDIHDLLVDPRENLVFVVIPPMNENPIEHLDSTYRHVVDAIFTSLLNFLGRIGGLYINLRNQGYLQIHSPRAFWDADSFREMLREVLSEHRIPQENDAIVWHRTNLQSLFNRFPQDRRIIGCLPDDQDGNRQEVNIHDFLRFLVHPSENLIFVVGDFHNYRELESKIDQHVKVSDPGTPTNLFVQIICQECQRRASRSFPMTTGESSSSSSSTSSTTPVISPNVTPVITPLNQSINPLTQPPNQPLSPNITPRPPLQPQPQQPQHFAHLNNRNLPFFQATSIPCLPPATSIKLNDTNFLLWKNQLLNVVLANGLNDFLDGSIPAPAKFLDEQQLQLNPEFLLWERSYDSKTTARIMGLKTQLQKIKKDGLSVSQYLAQIKDVADKFSAIGEPISYRDHLAHILDGLGSEYNPFVITIQNRSDNPSLEDVRSLLLAYEARLEKQTVVEQLNMAQANLSALQLNNSRRPASRNPTPATRTPFNPSTFPSFSSSTAAPFSNSLLGKPQSQPIQKWPQDPPPISLNAKYVANLGIPLSFAIIGPI

Homology

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BLAST of Lag0041315 vs. NCBI nr
Match: KAG6600811.1 (hypothetical protein SDJN03_06044, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 315.5 bits (807), Expect = 1.1e-81
Identity = 144/177 (81.36%), Postives = 162/177 (91.53%), Query Frame = 0


Query: 128 IPPMNENPIEHLDSTYRHVVDAIFTSLLNFLGRIGGLYINLRNQGYLQIHSPRAFWDADS 187
           IPPMN+NP+EHLDSTYRHVVD IFTSLLNFLGR+GGLYINLR QGYLQI+SPRAFWD DS
Sbjct: 33  IPPMNDNPVEHLDSTYRHVVDVIFTSLLNFLGRLGGLYINLRGQGYLQIYSPRAFWDVDS 92

Query: 188 FREMLREVLS-EHRIPQENDAIVWHRTNLQSLFNRFPQDRRIIGCLPDDQDGNRQEVNIH 247
           FREMLREVLS +HR+PQENDAI+WH TNLQSLF+  PQ+RR+IGCL +DQ GN+QE+ IH
Sbjct: 93  FREMLREVLSDQHRVPQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIH 152

Query: 248 DFLRFLVHPSENLIFVVGDFHNYRELESKIDQHVKVSDPGTPTNLFVQIICQECQRR 304
           DFLRFLVHP+ENL+FVVGDF NYR LE +IDQ+VKVSDPGTPTNL V+ ICQECQRR
Sbjct: 153 DFLRFLVHPNENLVFVVGDFRNYRVLEEEIDQYVKVSDPGTPTNLCVRFICQECQRR 209

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BLAST of Lag0041315 vs. NCBI nr
Match: XP_022942054.1 (uncharacterized protein LOC111447242 [Cucurbita moschata])

HSP 1 Score: 313.2 bits (801), Expect = 5.4e-81
Identity = 143/177 (80.79%), Postives = 161/177 (90.96%), Query Frame = 0


Query: 128 IPPMNENPIEHLDSTYRHVVDAIFTSLLNFLGRIGGLYINLRNQGYLQIHSPRAFWDADS 187
           IPPMN+NP+EHLDSTYRHVVD IFTSLLNFLGR+GGLYINLR QGYLQI+SPRAFWD DS
Sbjct: 33  IPPMNDNPVEHLDSTYRHVVDVIFTSLLNFLGRLGGLYINLRGQGYLQIYSPRAFWDVDS 92

Query: 188 FREMLREVLS-EHRIPQENDAIVWHRTNLQSLFNRFPQDRRIIGCLPDDQDGNRQEVNIH 247
           FREMLREVLS +HR+PQENDAI+WH TNLQSLF+  PQ+RR+IGCL +DQ GN+QE+ IH
Sbjct: 93  FREMLREVLSDQHRVPQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIH 152

Query: 248 DFLRFLVHPSENLIFVVGDFHNYRELESKIDQHVKVSDPGTPTNLFVQIICQECQRR 304
           DFLRFLVHP+ENL+FVVGDF NYR LE +IDQ+VKVSDPGTP NL V+ ICQECQRR
Sbjct: 153 DFLRFLVHPNENLVFVVGDFRNYRVLEEEIDQYVKVSDPGTPMNLCVRFICQECQRR 209

[Close]

BLAST of Lag0041315 vs. NCBI nr
Match: XP_022989850.1 (uncharacterized protein LOC111486913 [Cucurbita maxima])

HSP 1 Score: 308.9 bits (790), Expect = 1.0e-79
Identity = 142/177 (80.23%), Postives = 160/177 (90.40%), Query Frame = 0


Query: 128 IPPMNENPIEHLDSTYRHVVDAIFTSLLNFLGRIGGLYINLRNQGYLQIHSPRAFWDADS 187
           IPPMN+NP+EHLDSTYRHVVD IFTSLLNFLGR+GGLYINL  QGYLQI+SPRAFWD DS
Sbjct: 33  IPPMNDNPVEHLDSTYRHVVDVIFTSLLNFLGRLGGLYINLGGQGYLQIYSPRAFWDVDS 92

Query: 188 FREMLREVLS-EHRIPQENDAIVWHRTNLQSLFNRFPQDRRIIGCLPDDQDGNRQEVNIH 247
           FREMLREVLS +HR+ QENDAI+WH TNLQSLF+  PQ+RR+IGCL +DQ GN+QE+ IH
Sbjct: 93  FREMLREVLSDQHRVLQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIH 152

Query: 248 DFLRFLVHPSENLIFVVGDFHNYRELESKIDQHVKVSDPGTPTNLFVQIICQECQRR 304
           DFLRFLVHP+ENL+FVVGDF NYR LE +IDQ+VKVSDPGTPTNL V+ ICQECQRR
Sbjct: 153 DFLRFLVHPNENLVFVVGDFRNYRVLEEEIDQYVKVSDPGTPTNLCVRFICQECQRR 209

[Close]

BLAST of Lag0041315 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])

HSP 1 Score: 266.2 bits (679), Expect = 7.6e-67
Identity = 158/316 (50.00%), Postives = 191/316 (60.44%), Query Frame = 0


Query: 361 PRPPLQPQPQQPQHFAHLNNRNLPFFQATSIPCLPPATSIKLNDTNFLLWKNQLLNVVLA 420
           P P    QP  P             F A   P LP   ++KLND NFLLWKNQLLN V+A
Sbjct: 6   PTPNFLAQPPNP-------------FSANPFPTLPQPLNVKLNDNNFLLWKNQLLNAVIA 65

Query: 421 NGLNDFLDGSIPAPAKFLDEQQLQLNPEFLLWE--------------------------- 480
           NGL  +LDG+I  P +FLD  QLQ NP +  WE                           
Sbjct: 66  NGLRGYLDGTIMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSLET 125

Query: 481 ---------RSYDSKTTARIMGLKTQLQKIKKDGLSVSQYLAQIKDVADKFSAIGEPISY 540
                    R YDSKTTARIMGLKT+LQ ++KDG SVSQYLA+IK++ADKF+A+GEP+SY
Sbjct: 126 THDIWSSLTRVYDSKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSY 185

Query: 541 RDHLAHILDGLGSEYNPFVITIQNRSDNPSLEDVRSLLLAYEARLEKQTVVEQLNMAQAN 600
           RDHLAH+LDGLGSEYN FV +I NR+D+PSLEDVRSLLLAYEARL+KQ  V+QLN+AQAN
Sbjct: 186 RDHLAHVLDGLGSEYNAFVTSIHNRADSPSLEDVRSLLLAYEARLDKQNTVDQLNIAQAN 245

Query: 601 LSALQL-NNSRRPASRNPTPATRTPFNPSTFPSFSSSTAAPFSNSLLGKPQSQPIQKWPQ 640
           L  L L +NS+RP  +   P         +FP  +S  +A  S S+LGKPQS  + KWP 
Sbjct: 246 LVNLSLQHNSKRPPPKFSFP----NHYKHSFP--NSPISAAQSQSILGKPQS--VHKWPP 300

[Close]

BLAST of Lag0041315 vs. NCBI nr
Match: RVW69807.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 162.2 bits (409), Expect = 1.6e-35
Identity = 103/262 (39.31%), Postives = 141/262 (53.82%), Query Frame = 0


Query: 348 TQPPNQPLSPNITPRPPLQPQPQQPQHFAHLNNRNLPFFQATSIPCLPPATSIKLNDTNF 407
           T PP    + N T      P PQ       +    LP       P L  + SIKL++TN 
Sbjct: 3   TFPPTPASNSNTTTNNNQNPAPQ-------ITQMTLP------SPSLSQSLSIKLDETNL 62

Query: 408 LLWKNQLLNVVLANGLNDFLDGSIPAPAKFLDEQQLQLNPEFLLWER------------- 467
           LL K+QLLNV++ANGL DF+D    +P K+LD    Q+NPEF+ W+R             
Sbjct: 63  LLRKSQLLNVIIANGLEDFIDPDQSSPPKYLDAACRQVNPEFVQWDRLNQLVMSWIYSSL 122

Query: 468 -----------------------SYDSKTTARIMGLKTQLQKIKKDGLSVSQYLAQIKDV 527
                                   Y+S + A +M L +QLQ+IKK  + +S+YL+++K V
Sbjct: 123 TPGMVGQIVEYSTARDIWASLNDEYESPSIATVMSLNSQLQRIKKIDIPLSEYLSRLKFV 182

Query: 528 ADKFSAIGEPISYRDHLAHILDGLGSEYNPFVITIQNRSDNPSLEDVRSLLLAYEARLEK 574
            D+F+ IGEP+SYRD L  IL+GL  EY+ FV +I NRSD PSL++V SLL  YE RL +
Sbjct: 183 FDEFATIGEPLSYRDKLTRILEGLPEEYDNFVTSIHNRSDRPSLQEVHSLLHTYEYRLSQ 242

[Close]

BLAST of Lag0041315 vs. ExPASy TrEMBL
Match: A0A6J1FQ78 (uncharacterized protein LOC111447242 OS=Cucurbita moschata OX=3662 GN=LOC111447242 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 2.6e-81
Identity = 143/177 (80.79%), Postives = 161/177 (90.96%), Query Frame = 0


Query: 128 IPPMNENPIEHLDSTYRHVVDAIFTSLLNFLGRIGGLYINLRNQGYLQIHSPRAFWDADS 187
           IPPMN+NP+EHLDSTYRHVVD IFTSLLNFLGR+GGLYINLR QGYLQI+SPRAFWD DS
Sbjct: 33  IPPMNDNPVEHLDSTYRHVVDVIFTSLLNFLGRLGGLYINLRGQGYLQIYSPRAFWDVDS 92

Query: 188 FREMLREVLS-EHRIPQENDAIVWHRTNLQSLFNRFPQDRRIIGCLPDDQDGNRQEVNIH 247
           FREMLREVLS +HR+PQENDAI+WH TNLQSLF+  PQ+RR+IGCL +DQ GN+QE+ IH
Sbjct: 93  FREMLREVLSDQHRVPQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIH 152

Query: 248 DFLRFLVHPSENLIFVVGDFHNYRELESKIDQHVKVSDPGTPTNLFVQIICQECQRR 304
           DFLRFLVHP+ENL+FVVGDF NYR LE +IDQ+VKVSDPGTP NL V+ ICQECQRR
Sbjct: 153 DFLRFLVHPNENLVFVVGDFRNYRVLEEEIDQYVKVSDPGTPMNLCVRFICQECQRR 209

[Close]

BLAST of Lag0041315 vs. ExPASy TrEMBL
Match: A0A6J1JNI2 (uncharacterized protein LOC111486913 OS=Cucurbita maxima OX=3661 GN=LOC111486913 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 5.0e-80
Identity = 142/177 (80.23%), Postives = 160/177 (90.40%), Query Frame = 0


Query: 128 IPPMNENPIEHLDSTYRHVVDAIFTSLLNFLGRIGGLYINLRNQGYLQIHSPRAFWDADS 187
           IPPMN+NP+EHLDSTYRHVVD IFTSLLNFLGR+GGLYINL  QGYLQI+SPRAFWD DS
Sbjct: 33  IPPMNDNPVEHLDSTYRHVVDVIFTSLLNFLGRLGGLYINLGGQGYLQIYSPRAFWDVDS 92

Query: 188 FREMLREVLS-EHRIPQENDAIVWHRTNLQSLFNRFPQDRRIIGCLPDDQDGNRQEVNIH 247
           FREMLREVLS +HR+ QENDAI+WH TNLQSLF+  PQ+RR+IGCL +DQ GN+QE+ IH
Sbjct: 93  FREMLREVLSDQHRVLQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIH 152

Query: 248 DFLRFLVHPSENLIFVVGDFHNYRELESKIDQHVKVSDPGTPTNLFVQIICQECQRR 304
           DFLRFLVHP+ENL+FVVGDF NYR LE +IDQ+VKVSDPGTPTNL V+ ICQECQRR
Sbjct: 153 DFLRFLVHPNENLVFVVGDFRNYRVLEEEIDQYVKVSDPGTPTNLCVRFICQECQRR 209

[Close]

BLAST of Lag0041315 vs. ExPASy TrEMBL
Match: A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 3.7e-67
Identity = 158/316 (50.00%), Postives = 191/316 (60.44%), Query Frame = 0


Query: 361 PRPPLQPQPQQPQHFAHLNNRNLPFFQATSIPCLPPATSIKLNDTNFLLWKNQLLNVVLA 420
           P P    QP  P             F A   P LP   ++KLND NFLLWKNQLLN V+A
Sbjct: 6   PTPNFLAQPPNP-------------FSANPFPTLPQPLNVKLNDNNFLLWKNQLLNAVIA 65

Query: 421 NGLNDFLDGSIPAPAKFLDEQQLQLNPEFLLWE--------------------------- 480
           NGL  +LDG+I  P +FLD  QLQ NP +  WE                           
Sbjct: 66  NGLRGYLDGTIMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSLET 125

Query: 481 ---------RSYDSKTTARIMGLKTQLQKIKKDGLSVSQYLAQIKDVADKFSAIGEPISY 540
                    R YDSKTTARIMGLKT+LQ ++KDG SVSQYLA+IK++ADKF+A+GEP+SY
Sbjct: 126 THDIWSSLTRVYDSKTTARIMGLKTELQNLRKDGSSVSQYLAKIKEIADKFAAVGEPLSY 185

Query: 541 RDHLAHILDGLGSEYNPFVITIQNRSDNPSLEDVRSLLLAYEARLEKQTVVEQLNMAQAN 600
           RDHLAH+LDGLGSEYN FV +I NR+D+PSLEDVRSLLLAYEARL+KQ  V+QLN+AQAN
Sbjct: 186 RDHLAHVLDGLGSEYNAFVTSIHNRADSPSLEDVRSLLLAYEARLDKQNTVDQLNIAQAN 245

Query: 601 LSALQL-NNSRRPASRNPTPATRTPFNPSTFPSFSSSTAAPFSNSLLGKPQSQPIQKWPQ 640
           L  L L +NS+RP  +   P         +FP  +S  +A  S S+LGKPQS  + KWP 
Sbjct: 246 LVNLSLQHNSKRPPPKFSFP----NHYKHSFP--NSPISAAQSQSILGKPQS--VHKWPP 300

[Close]

BLAST of Lag0041315 vs. ExPASy TrEMBL
Match: A0A438GC62 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_210 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 7.5e-36
Identity = 103/262 (39.31%), Postives = 141/262 (53.82%), Query Frame = 0


Query: 348 TQPPNQPLSPNITPRPPLQPQPQQPQHFAHLNNRNLPFFQATSIPCLPPATSIKLNDTNF 407
           T PP    + N T      P PQ       +    LP       P L  + SIKL++TN 
Sbjct: 3   TFPPTPASNSNTTTNNNQNPAPQ-------ITQMTLP------SPSLSQSLSIKLDETNL 62

Query: 408 LLWKNQLLNVVLANGLNDFLDGSIPAPAKFLDEQQLQLNPEFLLWER------------- 467
           LL K+QLLNV++ANGL DF+D    +P K+LD    Q+NPEF+ W+R             
Sbjct: 63  LLRKSQLLNVIIANGLEDFIDPDQSSPPKYLDAACRQVNPEFVQWDRLNQLVMSWIYSSL 122

Query: 468 -----------------------SYDSKTTARIMGLKTQLQKIKKDGLSVSQYLAQIKDV 527
                                   Y+S + A +M L +QLQ+IKK  + +S+YL+++K V
Sbjct: 123 TPGMVGQIVEYSTARDIWASLNDEYESPSIATVMSLNSQLQRIKKIDIPLSEYLSRLKFV 182

Query: 528 ADKFSAIGEPISYRDHLAHILDGLGSEYNPFVITIQNRSDNPSLEDVRSLLLAYEARLEK 574
            D+F+ IGEP+SYRD L  IL+GL  EY+ FV +I NRSD PSL++V SLL  YE RL +
Sbjct: 183 FDEFATIGEPLSYRDKLTRILEGLPEEYDNFVTSIHNRSDRPSLQEVHSLLHTYEYRLSQ 242

[Close]

BLAST of Lag0041315 vs. ExPASy TrEMBL
Match: A0A7J0EGI5 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.2e-35
Identity = 89/240 (37.08%), Postives = 133/240 (55.42%), Query Frame = 0


Query: 356 SPNITPRPPLQPQPQQPQHFAHLNNRNLPFFQATSIPCLPPAT---SIKLNDTNFLLWKN 415
           S +  P PP  P    P   + + N N      + +P +P      ++KL+D N+++WK 
Sbjct: 8   SASTPPAPP--PPTSNPLPSSSIPNPNPQILNTSPLPNMPSINQPLAVKLDDHNYIIWKE 67

Query: 416 QLLNVVLANGLNDFLDGSIPAPAKFLDEQQLQLNPEFLLW-------------------- 475
           QLLN+V+ANGL +FLDGS   P +FLD QQ Q NPEF  W                    
Sbjct: 68  QLLNIVIANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLVMSWIYASINESML 127

Query: 476 ----------------ERSYDSKTTARIMGLKTQLQKIKKDGLSVSQYLAQIKDVADKFS 535
                           ER Y + + A +  L+T LQ IKK+GL+   Y+ + + + +  +
Sbjct: 128 GQIVGYTSASQIWEALERLYAAASFAHLTELRTALQTIKKEGLTALAYIQKFRHLCNSLA 187

Query: 536 AIGEPISYRDHLAHILDGLGSEYNPFVITIQNRSDNPSLEDVRSLLLAYEARLEKQTVVE 557
           +IGEP++Y DHL + L GLG +YNPFV +IQ+++  PS+E+V SLLL+Y+ARLE+Q+  +
Sbjct: 188 SIGEPVTYTDHLIYFLGGLGRDYNPFVTSIQSQAIRPSIEEVHSLLLSYDARLERQSATD 245

[Close]

BLAST of Lag0041315 vs. TAIR 10
Match: AT5G48050.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 58.9 bits (141), Expect = 1.7e-08
Identity = 32/105 (30.48%), Postives = 59/105 (56.19%), Query Frame = 0


Query: 449 FLLWERSYDSKTTARIMGLKTQLQKIKKDGLSVSQYLAQIKDVADKFSAIGEPISYRDHL 508
           +L  E  +     AR +  + +L+    D LSV +Y  ++K ++D  + +  PIS R  +
Sbjct: 101 WLSLENLFRDNKEARALQFENELRTTTIDDLSVHEYCQKLKSLSDLLTNVDSPISDRVLV 160

Query: 509 AHILDGLGSEYNPFVITIQNRSDNPSLEDVRSLLLAYEARLEKQT 554
            H+L+GL  +Y+  +  I+++S  PS  + RS+LL  E+RL  ++
Sbjct: 161 MHLLNGLTEKYDYILNVIKHKSPFPSFTEARSMLLMEESRLSNKS 205

[Close]

BLAST of Lag0041315 vs. TAIR 10
Match: AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 6.8e-05
Identity = 23/99 (23.23%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 453 ERSYDSKTTARIMGLKTQLQKIKKDGLSVSQYLAQIKDVADKFSAIGEPISYRDHLAHIL 512
           +  + +   AR + L ++L+      + V+ Y  ++K +AD    +  P++ R+ + ++L
Sbjct: 103 KNQFRNNKDARALRLDSELRTKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVL 162

Query: 513 DGLGSEYNPFVITIQNRSDNPSLEDVRSLLLAYEARLEK 552
           +GL  +++  +  I++R   PS +D  ++L   E RL++
Sbjct: 163 NGLNPKFDNIINVIKHRQPFPSFDDAATMLQEEEDRLKR 201

The following BLAST results are available for this feature:

BLAST of Lag0041315 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600811.1	1.1e-81	81.36	hypothetical protein SDJN03_06044, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022942054.1	5.4e-81	80.79	uncharacterized protein LOC111447242 [Cucurbita moschata]	[more]
XP_022989850.1	1.0e-79	80.23	uncharacterized protein LOC111486913 [Cucurbita maxima]	[more]
XP_022155181.1	7.6e-67	50.00	uncharacterized protein LOC111022315 [Momordica charantia]	[more]
RVW69807.1	1.6e-35	39.31	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]

BLAST of Lag0041315 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0041315 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FQ78	2.6e-81	80.79	uncharacterized protein LOC111447242 OS=Cucurbita moschata OX=3662 GN=LOC1114472...	[more]
A0A6J1JNI2	5.0e-80	80.23	uncharacterized protein LOC111486913 OS=Cucurbita maxima OX=3661 GN=LOC111486913...	[more]
A0A6J1DQX7	3.7e-67	50.00	uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A438GC62	7.5e-36	39.31	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A7J0EGI5	2.2e-35	37.08	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1	[more]

BLAST of Lag0041315 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48050.1	1.7e-08	30.48	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]
AT1G34070.1	6.8e-05	23.23	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 551..571
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 454..551 e-value: 1.4E-14 score: 54.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 350..370
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 306..375
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 569..624
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 306..349
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 569..618
None	No IPR available	PANTHER	PTHR34222:SF48	SUBFAMILY NOT NAMED	coord: 407..586
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 407..586
IPR029026	tRNA (guanine-N1-)-methyltransferase, N-terminal	GENE3D	3.40.1280.10		coord: 143..304 e-value: 1.9E-5 score: 26.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0041315.1	Lag0041315.1	mRNA