Lag0041289 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0041289
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase
Locationchr13: 15039999 .. 15050196 (+)
RNA-Seq ExpressionLag0041289
SyntenyLag0041289
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTAAGTCAGCAAACAGAACGGTAGGGAGTGGAAAAGTAAGAGCAAGAGGAGAGAGTAGAGAATATAGAATAGTGTTTTGGGATAGAATTCGGGTCCCCTTCTTCAGTGGCGAAGAGGGATATAAATACCTGCTCATCCTCCTAGGGTTTTTAGGGATTCGGAGGCGTTTTAGGTCAAACCAGGTGAAACCGAGGCGGCCAAAGGCGGTGGGGACCAAACGGCATCGAACAGACTCGGCCCGAGCGAGCGGGCCGAGGGTCGGCCTCGGCCCAGGCCGAGCAGTGGGTCGGGTCAAAAACCCGACCCCTTCGGTCTTGGCCCGTCCCACTTGCTGGTTTGCCTCCTTGGTCCATCTTTCAGGCCGATTTCTCCCCGATTGTCCTTGTCAGTTCCTTGTATATCGGGGTGGTCCAAAATTGCCTATAACATATATATTAATTGAAACATTCATGGGTATACTTGTATAAAATTAAGATCTCGACACTCGTAAGGTTAGAATGAAAATAGATGAGAAGGTAGCGTGAAGATGAAGAGCACATAAGGAAAATGAGAAGAGATGTAGAGGATAAAAGCTCATGACGGCGTAAGATAGCAAGAAGCAGTTGAGTAGTACTTTAGTCAATGAGTGAGGTCGGACAGATGTTTCATAAAAGGACAGAGGAAAAGCACAAGGTAGTGGGGGAGGAAGGCCGTTGACTTTTATCCCAACACAAAAAAAGCATCTTTTTTTTTTTTCTTAAATATTCACTATCTTTTCAATTTAAATATTTAGATTAAATTATATAAAAAATGATGGTTAAACTTTTAGATTATTCTAAATTTCATCTTTTTTGGGTGTTGTTTGATAACCATTTGATTTTTTATTTTTTAGTTTTTGAAAATTAAACTTAAAAATACTACTACTACCAATATGTTTGTTGACTTTGTTATCTACATTCTTTTCATGTTTTTAAAAGTCATGTCAAGTTTTGAAAACTAAGGCCCCGTTTGATAACCATTTGGTTTTGGTTTTTGGTTTTTGAAAATTTGGCTTGTTTTCTTCCAATTTTCCTACCATGGTTGTCATATTTGCCAATGACACATTTGAGTTCCTAGCCAAATTCTAAAAACAAAAACAAGTTTTTGAAAACTACGGCCCCGTTTGATAACCATTTGGTTTTTTGTTTTTAGTTTTTGAAAATTAAGCCTATAAACACTACTTCTACCTACAAGTTTCTCTTGTTCTAGTTATAAAAACATTCAAGATTTTATTTGATTTTTAATTTTTTGCTCCTTAACTTGGGGAATGTCTATTTTATTTTTAAAATTTTAAAAACGATATTTTGATCTTTGCCATATTATTTTTCTATCTAATATCTAGTTGTCTAATGATCCTCTCTAATATATATGGCTTGAAATCATACTCGTATTAATACGTTAGTATACATATATACTCAAAACTATGTCATTCATTTGTAAAAAGCAAAATAAAGGTGATGACAAAAATGATTTTTTTTTTTTAAATGTCAAAGATTAAAATAGGCATTTTAAAAATCTAAAGATGACAATGGAACAAATTTGAAAATTCAAGAACCAAAGTGAACATTTTGAATGTTTAGGGATGAAAATGAAACAATCTTGCAAGTTCAGGAACCAAATAAAATTTAAACTATTATTGTTTTATTAATATATTTGAACATGTGGACATGTTAATTGAATGCTAGTCACATGAAAACCTAATTTGTTTATAAAAAAAAATTTAACTTAGGCCCCATTTGATAACCATTTGATTTTTGGTTTTTGGTTTTTGAAAATTAGGCTTATTTTCTAACAAATTTCCTACCATGGTTTTCATTCTTGTCAAGGATACATTTGAATTCCTAGCCAAATTTCAAAAACAAAAACAAGTTTTTGAAAACTACGACCCCATTTGATAACCATTTGGTTTTTGGTTTTTGAAAATTAAGTTTAAAAACACTACTTTCACCTACTAGTTTCTTTGTTTTTCTAATACCCTTCTTTCCATATTTTAAAAAACCAAGCCAATTTTTGAAAACAAAAACAAGTAGTTTTCAAAAACTTGTTTTTGTTTTTGGAATTTGGCTAGGAATTCAAATGTATCATTGACAAGGATGAAAACCATGGTAGGAAAATTGAGAGAAAATAAGCCTAATTTTCAAAAACCAAACACAAAAAACCAAATGGTTATCAAACGGGGCATATTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACATGAAAAAAAATGTATTAGAAAGACAAAGAAACTTGTATGTGAAAGTAGTGCTTGTAAGCTTAATTTTCAAAAACCAAATGGTTATCAAATGGGGTCTTATCTATTAAGTAGATTTCATTTTCTTCTAACTTACATGTCTCAGTGTCTAAATGATAATAAAACAATAATTTTAACCAAAATTGAGAATTTTAAAATATTAAAGTTGAAACTCAAAATTATGTACCAACCATTTGAAATATTCAACGAAATATATATTCAAACCATCTTACCATCATTTCTACTCATGAGAAAGGAGTAGGAAAAAGAAAAAAAAGGAATAATCATTAAGGGAAAAAATGACAAATTATGGAAAAGTCCAGATTTTTGGACACTTCACACTTCCTCCCTTTTCCTTAAGTCAGCGTTCGCCTTTTTTTATTTTATTTTATTTTTTTTATTATTTATTCTCTTTTGCATTTTACTTTTTCATTTTCAACTTTAATATTATATTTTATTTCTCTTAACTTTTAGATTAAACAACAAATTTAATCCAACACTTTGATGATTGTATTCATTTGATCTTTTCAATTTTAAAGTATTTTGATGGTTCAGGTTGAAAGTGTGATTAAAGTCCCATATTGGCTAAATTAGAGGAATATGTATTTAAGGAATGACAAATATCTTCACTGACATGAGATCTTTTGGGTGAAACCAAAAGCAAAGTCATTAAGACTTATGCTCAAAAGGAACAATATCATTGTGGAGATTTATGGTACGTTGTGTATATAGGAATGTCATCAAGATTCTATGGGAATCAATTATGTCTCTGTTTATTTTATAGGATTAATTATTAAAATCTTATGTAATTTTAATAGATTAATCTATAAAACAATCAAAATTAATTCAAAGTTCTAATAAAAATGAATTAACTAATAATCCATGAATAATTTTTTTCTAATGGATCAAGGAATAATTTTAATTGAATAAATCAAGTTTATTTGACTAATTAAAAATATTTATTTAATATTTTCAATAAATATCTTTAATTACATTAATTTTAAGTTTTACTGTAAGTTTTATTGATCCACAAGTTAACTAATGAATAACTTTACCAAAACTCCAATGAATATATTTTTCTAATTGATCCATAAATAATTTAATTGAATAAACTAATTTAATTTGACTAATTAAAAATATTTATTTAATATTTTTAATAAATATCCTTAATTACATTAATTTTAAGTTTGGTTAATCCACAAATTAGCTAATAAATAACTTTACCAAAACTAACCAATTTTAACAAAATGCAGCTCTAACATTGTTTTTCTTTTATCTTTTTATCAGTCTTATATCATACATGCGTTTTATAATCTATTGAAAACATACTAGAATACTTTTTTTAACGATTTTTTTAAAAAGATATGATTATTTCATTACAATTGAATGATTAACTAGGTTAATTCATACATTATTTGTTAGGTTGATCATAAAAATCAATTTAAATAATATAATTAAATTTATTTTATTTTATTTTCGAGGAATATATAATTAATTTTAATAGATTGAATAACTTATTAGGTTAATTCAACATATTATTATAAGCGTGCCTCAACATATTATTATTTAAAAAAAAACATATTATTATAAAATAAGTTTTATTTGTTGGAATTTTACAAATAAAATGTGAAAGAAAGTGATTTAAATTAAATTCATCAAAAGTTTCAAAATGGATTGTAACATCAAACTCAATTTGAAGTTTCAATTACAAATTTAACATATGGAAGTTAAATTTTGTGTTATAACTCAATTGAGTTATATTTTTCATATGTTTCAATTTTATTTAATTTTGTTCTTACTAAGTTGCTAGCCTATAAATAGCAACTTGTTTCTTCATTTGAATCATCCTATTCCATTAGAAGCATTTTTTTTCTTCTTTCTTTGTTTCTTCTACTCTTGAGTCAAGTTGGGAGCAAGTATCCAAGAGTTTTGTCAGATCCAAGTAGTTTGAGGTTGTTGTTCTACTGGAATTAGTTATTGTCGTATCCTGCTGAAATGATCGCTATAGCCTGCTTGTAACATGTGTCGAGCGAATAATTGTCTTGAGGACAACGCTTTGTAAGCGTGCCTCGACTATTTATTGTCAATATATTTTGTAACATTATTGTCATATATACAGTGTCTGTATTGTTATTTACACTGTAATTGTTAGTATCCAGTTAAGGTGTAATCAATTTGCAAGTGTAATTCAGTTCTTATTTGAACATATTTCCAACCTTATATATTTTGGATGATTATAAAAATTAATTTTAATAGAATAAATTAATCTATTAAAAGAAAGATGAATATTGATAAAAATATGAGAAAGAGAGAAAAGTACATAAAGAAAACTCATACTTTTATAAGGGTATCAAATATCCACACCCATGGGGTATACAAAACCCATGGGAATAGCTCAAAACCTTGTACTAAACAAGAGATTTTGTATCCCTTCGTCATTTCCATCCTTATTCTTCCCCATCTTTATACCTCAAACAAAACGACCCTTAACCGTCTCTAAATTTTCAATTTTGCTTCTAATAACTTTTTTTGCTAGTGACACTATTTACTTAAATATTGACGTGATTGGTTGATTAGATATATTAAGGAATATTTATTATGATGAAAATATGTGGCACAAAGGAATATTCTAGTTACATAAACTAAGAGAAATAAATAAATAAATAAATAAAATGCATTTTTTTTTTGAAAATATATAAAATGCATTTAAACACACATCTCATTATAAAAAAAATAAAAAAAATGGATCTAGTCTATTCTTATTTTGTCCTATTGACTTACCCCTAAGGATTATGTCATGTCAAAATGTCACTTGTAATTCCAACCAGCATATCATGTCTAATATTTAGATATTAATGTTAACTACGATCTTTTTTTTTTTAAAAAAAAAAAATTAACTAAGATCTATCAGTATATAAATAACTAATTTAGAGATCGAAATTAATTTTTTCAAAACCTAAACATAATATAAACAACTATGTTATCGAGCTAAACTTAATATGAAGGTTTTTTTTTTTAATCTGTCATTTTACTCCACATTTTGAAAGCTAAGAACTTTCTTTTACTTTTTAAATAAATTGAAATTTTTATTAAAAAATAAAAGAAGAGGATCTCATCGCCAAAGATTTAAAGTACACAAATACGACAGCCTTTGGTAAAAATTAAGAATTTTCAATTATTAAGTTCGGTTTGATAACCATTTCAGTTTTTGATTTTTGGTTTTTTGTTTTTTGTTTTTTAAAAAAACCATATATGTTTGATAACTGATTTTTGTTTTCGATTTTTAAAAAATTAGAAAGATGAAAAGATGTTTTAGAGAGAGAAAAATGGGTAGAGACATTAAAACAAAAATTTAGAGACACAAATATAAATATTTTCTAGAGAAAAGATAAACATAGCAAATTTAGAGAGGTGAATAAAATGTTTAGAGAGAGAATATTAGTTAGACTCGAGAAGAGATATTAGTTAGAGAAAAAAATATATAAAAAAGTTAGAGTAAAAGCGATAAATTTTAGATAAAAAAATAAATAAAAAGAGAAATTTTAGAGAGATAGTAAGGTTAAGAGTAAAACATATGCTAAAGAAATAATGATAAAATTAGAAAAATAAAGAAAAGTTGTAGCAAGAGAAAATTTTGGAGAAATTTTTTTTTTCAAAAGAAAAATTAGAATATGTTTATTAATGAGAGAAAAGTTATGGACAAGTTTTTAGAAATAGATAAGTTATAGAGGAAAAAAATTTTTTTGAGAGAAAGAAATTTTATAGAGAGAAAAAGTTCTAGAAATCAGCAAAAAATAGAAAAAGGAATTTGTTGGAGAGAGATAGATAAAAGAGGAGAAAATAAGCATATGAAGAAAAATGAATTTTTAAGAAACAGAAATCTCTTTTTAAAAAAACTATATTTTTTTTTGTTTTGAAATTTGCTTATAATTTCAAAAACGTTTTTACAAAACAGAAAACAAAAAACAGAAATCAAACACTTCTGGTTTTTTAAAATGAAAAACAAAAACAGAAAAAGAAAGGGTTATCAAACCACCCATTATGCTATTTTGAAACTTATCCAATTTTAGTTCATTCTAAAAAATCAAACTCTATTTTCGATCTATCCATAGAAAATTAATTTTAAGTCAAAAAATTATTACCTGATATATTTATATTCTATCAGCCAAATTAAAATTATCACTTATTAATTGTAAAATTTGGTAAAAAGGGAAAAAAGTTTTAAAAGTTTAGAATGTTTAAAGTTAGAATCACAGTAAAAAATTAAATTTGAAATTTTATTGGTAGCTTCAATTCTTAAAAATTGGAATATTAAGAAATATAAATTTTTATAAAAAATGATTACATTTACAAATATAACATAATAAAATAGTAATAACAAATATTTTTTCAAAAAAAAAAAAAATAGTAATAACGAATATATTACTCCAAAACACTCATGAAGGTGATAATATATATACATATATATTTCATTTTGCACTAGTTATTATATTGTTAATTAAATTTAAATCTATGGGCTATCTTTTTTTCTTTGAAAAAGGAAAATTCTCATTAAATAACAATAGAACCTTTAGGAGGTACAAACAAACTATGCTTGGGAGTGATAATCCAACCATCCAATCAGGATAGTTTCCTTGCCATAAAATCGGCGAAGGAGAAAGATTATTAAATCTGTGGGCTATGATGGTTTATTTCAACTCTGAATATAAATATAGAAAGTAGATTATTAAATGTTTTTTTTTTTAAATATTAAATGTTAACTTTTCATTTAATGTTCAGAAAAAGTATAGCCCATTTATTTAGATCATCGAAGTATGTGAAAAGGTTATTAAGCTTGAAATTAGGAAATATTATATCCACAATATTCTTAATTTTTTTTTCTGAGGGGGGGGGGGGTCCGGTTAACATATTAATAATTGCTTCTAATTAATTATTACATTTCAGAGTCAATTCGAAGTATTTTATCATAGAGATTGTCTAGGATCAAGTGACTGATTAATCATATGGGGAGCATCAATATAATGATGACATGAAATATGATCTTCTTTTTCTCCCTTTTCTTATGTCTTTTAAATAGTATACAATATAAAAATATAATGGTTTTAACTTACCATCTCTAACCTTCCAATTGAAACGACTAATAAAGTTCAAGAAATGATTTTAAATTTGTGACTTGAAATTTAAAAAATAATCTTAATTTTTGTATCTTGTCTGGAATGATAAAAATTTAAAATGAATGTATTTAAAATTTTGTGTTTGAATGGTGATGGAAAAGAAAAAAAAGTTTACTAATATAGGTTTTTGATTTATTAATAAAAAATTTAAATATGACAAGGTGAAATAAGTAATTTAGATCTAAATTGTATGAAATCTTATACAATCCAAAGATTTTAATTGGGATACTTTTTTTTTTTTTTTTTTTTTGCGTAAAAATACAATTTAAAATCACTTCAAAATTTAAATCATTCTCTCTTCCTTCTTATAACAAACAACAAAATTGATTTGAAATTTGTTATGATTTAAAATCATTCAAAATCATGAGGTTCCACACAGATCATAAAAGAGAAGTATAGTGTTTGTTTGGTAAAATTGTTTTGGTTTTCGTTTATGGTTTTTCATATCCTTTTTAATAATGAAAAATAGGAATGTATTTGATAAGTGTTACTTTTTTTTTTTTTTTAAACTCTTTTTTCTTTATTAAAAAGAAATAGAAATAGCAAAAATTTCTAACCCCACCGTAGTATAATTTTTTTTCCTACTCCTCCATTAGTTTGTTGTTTTAGAATTAGACTTATTCGATGTATGTGGTATTGATTTTATGGGGCATTTTCCCCCTCTAATGGTAATGTACTTATTTTGTTGGCAGTTGACTACGTGTCCAAGTGGGTGGAAGCCATTGCATGTCATCAGAATGATGCTAAGACGGTGTCAAGGTTTCTTCAATCGCACATTTTTGCGCGGTTTGGGACACCTAGGGCTCTTGTGAGCGATGAGGGTACACACTTTGTGAATAATGTGTTAGCTAAGCTTTTAGAGAGTATGGAGTGAAGCATAGGATAGCTACACCCTATCACCCACAAGTAAATGGTCAAGCTGAAGTTAGTAATAGGAAAATTAAATCTATTTTAGTGAAAGTAGTCCATCCATCTAGGAAAGATTGGTCTTTTCGGTTAGATGAGGCTCTTTGGGCTTATAGGACAACCTATAAGACTCTTTTAGGTATGTCTCCCTATAGGTTAGTATATGGAAAGACTTGCCATTTACCATTAGAGTTTGAGCATAAAATGTTTTGGGCTTTGAAGAAATTGAGTTTTGATTTAGGTCGTGGAGGTGCAATAAGAATGCTGCAACTTAACGAGTTAGAGGAGTTTCGCCAGTTTTTTTTATGAAAATGCAAAAATGTATAAAGAGAAGAAAAAGCGATGGCATGATAAGAAGTTAAAACCTAAAGAATTTGTTAAGGGCCAAAGAGTCTTGTCGTACAACTCTAGATTAAAATTGTTTTCTGGAAAATTAAAATCTAAATGATCTGGACCGTTTATTGTGATTGAAGTTTTTTCTCATGGGGCAATTACTTTGAGAGATGAAAAAGATGGGCGAATGTTTAAGGTTAATGGACAACGAGTAAAACATTACTGGGGAGAGGAATTTCGTTCGAAATATCCTTCCCTAAAATTGGCTGAAGAATACGCGAGCAAGGTTTTTGCGAGAGCATTTCATATTGCAATATTTTTAGCTCCCAATGATTGTTGCGATTTTATTTTATTTTATTGATTTTATTTTATTTTGATTTGAATTATTTTGAATTAGATTTTGTTTATTTTTATCTTATCTGAGTTATTTTTAATTTGTTGGTATTTTTAATTTTCGATTGGATTTTATTTTCGGTTTATTTATTTTGAATTTAGCCGATTTGATTTTTAAATTATCGGATTAATTTTTGTTTAGATTTAGTTGTATTTTTATTTTAATTTTTGTATAGTTTAGGTTTATAATAATATTTCCTAATTTATTCGGTGAAAGAAGATTTGATTTGATTTTTGGCGGTTTGAATTTAAATTTTCGGATAAAATGTAACGTCCCGAGCATTTCAATGTGTTAATTCTCTTGTATTTAAGACCAAGGTTAATTTAATTATAACCTGGCTTGTATTTTGGGAGTTAATAAAAAATCTTATTGTTTGAATGTTCTTCCCTTGGGTGCTGAGCGTTATTAAAATAAATCCCTCACTAAAGTGGTTGAACTTGGGTTGTAATCAGTTGAGAAATGTCAGTGTTGTAAATTCATTTATGCGTTGAATAATGAGTGTTGGTTGAGAAATGGCTATTTTTGGGTTTTATGAGATAAGAAAAATGAATTAAAAATAATTGGAAAAAAGAAGAAGCAAACCCTATCTTTCTCATCTCTTCCTTCTTTTCACGCGTAACACACCCCCCTAGTCGACCTTGCAGCCGCCGCTGTCTTCCCTCGTGCCGCCGTCCAGATCTGCAGCCGCCGCCGCTGCCCAGACTGTACTGCTGCCGCCGTCGACACGCCGAGCCGTGGGTCGTCTCTTCTTCGTGAGATATCCCTCCGCGAGCTCTCCCTCTCTCTGCGTCGTCTTCCTCCGCGCATTCTCCCTCTCTCTGCAGATCTCTCTTCCTCTCGTGTTGCTGTGCAGCTCTTCCTCGTGAGTAGCGTCGCCGCCTTCCCCAATCAGAGCCGCAACCTCTCACCCTCTCTGTTGGCGCGATTTCGGCTAAGGAAAGTTGTGGGTAAGCCTTTTCCTTTCCGATCTAGTTAGTTTAAGGCTCGATCTCACTGTTTCCTCTCTCGTTTAGTCTGATTCGCGCGTGTCCAGCTACTCGAGCTTCACTTTCGAGCATCCTCTCCTCTGTCCAGTGGCGTTTTGACTCCGTTCTAGACCATTGCAGCATCGCCTAG

mRNA sequence

ATGCTTAAGTCAGCAAACAGAACGGTAGGGAGTGGAAAAGTAAGAGCAAGAGGAGAGAGTAGAGAATATAGAATAGTGTTTTGGGATAGAATTCGGGTCCCCTTCTTCAGTGGCGAAGAGGGATATAAATACCTGCTCATCCTCCTAGGGTTTTTAGGGATTCGGAGGCGTTTTAGGTCAAACCAGGTGAAACCGAGGCGGCCAAAGGCGGTGGGGACCAAACGGCATCGAACAGACTCGGCCCGAGCGAGCGGGCCGAGGGTCGGCCTCGGCCCAGGCCGAGCAGTGGGTCGGGTCAAAAACCCGACCCCTTCGGTCTTGGCCCGTCCCACTTGCTGGTTTGCCTCCTTGGTCCATCTTTCAGGCCGATTTCTCCCCGATTGTCCTTTTGACTACGTGTCCAAGTGGGTGGAAGCCATTGCATGTCATCAGAATGATGCTAAGACGGTGTCAAGGTTTCTTCAATCGCACATTTTTGCGCGGTTTGGGACACCTAGGGCTCTTGTGAGCGATGAGGCCGCCGCTGTCTTCCCTCGTGCCGCCGTCCAGATCTGCAGCCGCCGCCGCTGCCCAGACTGTACTGCTGCCGCCGTCGACACGCCGAGCCGTGGGTCGTCTCTTCTTCGTGAGATATCCCTCCGCGAGCTCTCCCTCTCTCTGCGTCGTCTTCCTCCGCGCATTCTCCCTCTCTCTGCAGATCTCTCTTCCTCTCGTGTTGCTGTGCAGCTCTTCCTCGTGAGTAGCGTCGCCGCCTTCCCCAATCAGAGCCGCAACCTCTCACCCTCTCTGTTGGCGCGATTTCGGCTAAGGAAAGTTGTGGCTACTCGAGCTTCACTTTCGAGCATCCTCTCCTCTGTCCAGTGGCGTTTTGACTCCGTTCTAGACCATTGCAGCATCGCCTAG

Coding sequence (CDS)

ATGCTTAAGTCAGCAAACAGAACGGTAGGGAGTGGAAAAGTAAGAGCAAGAGGAGAGAGTAGAGAATATAGAATAGTGTTTTGGGATAGAATTCGGGTCCCCTTCTTCAGTGGCGAAGAGGGATATAAATACCTGCTCATCCTCCTAGGGTTTTTAGGGATTCGGAGGCGTTTTAGGTCAAACCAGGTGAAACCGAGGCGGCCAAAGGCGGTGGGGACCAAACGGCATCGAACAGACTCGGCCCGAGCGAGCGGGCCGAGGGTCGGCCTCGGCCCAGGCCGAGCAGTGGGTCGGGTCAAAAACCCGACCCCTTCGGTCTTGGCCCGTCCCACTTGCTGGTTTGCCTCCTTGGTCCATCTTTCAGGCCGATTTCTCCCCGATTGTCCTTTTGACTACGTGTCCAAGTGGGTGGAAGCCATTGCATGTCATCAGAATGATGCTAAGACGGTGTCAAGGTTTCTTCAATCGCACATTTTTGCGCGGTTTGGGACACCTAGGGCTCTTGTGAGCGATGAGGCCGCCGCTGTCTTCCCTCGTGCCGCCGTCCAGATCTGCAGCCGCCGCCGCTGCCCAGACTGTACTGCTGCCGCCGTCGACACGCCGAGCCGTGGGTCGTCTCTTCTTCGTGAGATATCCCTCCGCGAGCTCTCCCTCTCTCTGCGTCGTCTTCCTCCGCGCATTCTCCCTCTCTCTGCAGATCTCTCTTCCTCTCGTGTTGCTGTGCAGCTCTTCCTCGTGAGTAGCGTCGCCGCCTTCCCCAATCAGAGCCGCAACCTCTCACCCTCTCTGTTGGCGCGATTTCGGCTAAGGAAAGTTGTGGCTACTCGAGCTTCACTTTCGAGCATCCTCTCCTCTGTCCAGTGGCGTTTTGACTCCGTTCTAGACCATTGCAGCATCGCCTAG

Protein sequence

MLKSANRTVGSGKVRARGESREYRIVFWDRIRVPFFSGEEGYKYLLILLGFLGIRRRFRSNQVKPRRPKAVGTKRHRTDSARASGPRVGLGPGRAVGRVKNPTPSVLARPTCWFASLVHLSGRFLPDCPFDYVSKWVEAIACHQNDAKTVSRFLQSHIFARFGTPRALVSDEAAAVFPRAAVQICSRRRCPDCTAAAVDTPSRGSSLLREISLRELSLSLRRLPPRILPLSADLSSSRVAVQLFLVSSVAAFPNQSRNLSPSLLARFRLRKVVATRASLSSILSSVQWRFDSVLDHCSIA
Homology
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BLAST of Lag0041289 vs. NCBI nr
Match: XP_024964983.1 (protein NYNRIN-like [Cynara cardunculus var. scolymus])

HSP 1 Score: 82.8 bits (203), Expect = 5.5e-12
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 131 DYVSKWVEAIACHQNDAKTVSRFLQSHIFARFGTPRALVSDEAA 175
           DYVSKWVEA+ACH NDAKTV +FLQ HIF RFGTPRAL+SDE A
Sbjct: 37  DYVSKWVEAMACHSNDAKTVVKFLQKHIFTRFGTPRALISDEGA 80

[Close]
BLAST of Lag0041289 vs. NCBI nr
Match: XP_024962120.1 (uncharacterized protein LOC112502446 [Cynara cardunculus var. scolymus])

HSP 1 Score: 80.9 bits (198), Expect = 2.1e-11
Identity = 43/86 (50.00%), Postives = 52/86 (60.47%), Query Frame = 0 

Query: 131 DYVSKWVEAIACHQNDAKTVSRFLQSHIFARFGTPRALVSDEAAAVFPRAAVQICSRRRC 190
           DYVSKWVEA+ACH NDAKTV +FLQ HIF RFGTPRAL+SDE          ++  +   
Sbjct: 18  DYVSKWVEAMACHSNDAKTVVKFLQKHIFTRFGTPRALISDEGTHFINNMLEEVLDKYDI 77

Query: 191 PDCTAAAVDTPSRGSSLLREISLREL 217
               A A    + G   L E+S RE+
Sbjct: 78  KHRVATAYHPLTNG---LDELSNREI 100

[Close]
BLAST of Lag0041289 vs. NCBI nr
Match: XP_024963106.1 (uncharacterized protein LOC112503277 [Cynara cardunculus var. scolymus])

HSP 1 Score: 79.0 bits (193), Expect = 8.0e-11
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 131 DYVSKWVEAIACHQNDAKTVSRFLQSHIFARFGTPRALVSDE 173
           DYVSKWVEA+ACH NDAKTV +FLQ HIF RFG PRAL+SDE
Sbjct: 18  DYVSKWVEAMACHSNDAKTVVKFLQKHIFTRFGIPRALISDE 59

[Close]
BLAST of Lag0041289 vs. NCBI nr
Match: XP_024965836.1 (uncharacterized protein K02A2.6-like [Cynara cardunculus var. scolymus])

HSP 1 Score: 77.8 bits (190), Expect = 1.8e-10
Identity = 33/40 (82.50%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 133 VSKWVEAIACHQNDAKTVSRFLQSHIFARFGTPRALVSDE 173
           VSKWVEA+ACH NDAKTV++FLQ HIF+RFGTPRAL+SDE
Sbjct: 89  VSKWVEAMACHSNDAKTVAKFLQKHIFSRFGTPRALISDE 128

[Close]
BLAST of Lag0041289 vs. NCBI nr
Match: XP_024962710.1 (uncharacterized protein LOC112502921 [Cynara cardunculus var. scolymus])

HSP 1 Score: 77.0 bits (188), Expect = 3.0e-10
Identity = 41/86 (47.67%), Postives = 51/86 (59.30%), Query Frame = 0 

Query: 131 DYVSKWVEAIACHQNDAKTVSRFLQSHIFARFGTPRALVSDEAAAVFPRAAVQICSRRRC 190
           DYVSKWVEA+ACH NDAK V +FLQ HIF  FGTPRAL+SDE+         ++  +   
Sbjct: 18  DYVSKWVEAMACHSNDAKIVVKFLQKHIFTIFGTPRALISDESTHFINNMLEEVLDKYDI 77

Query: 191 PDCTAAAVDTPSRGSSLLREISLREL 217
               A A    + G   L E+S RE+
Sbjct: 78  KHRVATAYHPQTNG---LAELSNREI 100

[Close]
BLAST of Lag0041289 vs. ExPASy TrEMBL
Match: A0A6J1DR08 (uncharacterized protein LOC111023021 OS=Momordica charantia OX=3673 GN=LOC111023021 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.1e-09
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 0 

Query: 131 DYVSKWVEAIACHQNDAKTVSRFLQSHIFARFGTPRALVSDEAAAVFPRAAVQICSR 188
           DYVSKWVEA+AC  +DAK V++FL  HIF RFGTPRAL+SDE +    +    + ++
Sbjct: 21  DYVSKWVEAVACASSDAKVVAKFLHKHIFTRFGTPRALISDEGSHFINKVVASLLAK 77

[Close]
BLAST of Lag0041289 vs. ExPASy TrEMBL
Match: A0A803R2M6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.6e-09
Identity = 44/96 (45.83%), Postives = 54/96 (56.25%), Query Frame = 0 

Query: 131 DYVSKWVEAIACHQNDAKTVSRFLQSHIFARFGTPRALVSDEAAAVFPRAAVQICSRRRC 190
           DYVSKWVEA A   ND KTV RFLQ +IF RFGTPRA++SDE +    +    + SR   
Sbjct: 304 DYVSKWVEAAATPANDGKTVLRFLQKNIFTRFGTPRAIISDEGSHFCNKQFEALLSRYGV 363

Query: 191 PDCTAAAVDTPSRGSSLLREISLRELSLSLRRLPPR 227
              TA      S G +   EIS RE+ + L +   R
Sbjct: 364 RHRTALPYHPQSNGQA---EISNREIKMILEKTVQR 396

[Close]
BLAST of Lag0041289 vs. ExPASy TrEMBL
Match: A0A2N9FX66 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19471 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.2e-09
Identity = 35/72 (48.61%), Postives = 46/72 (63.89%), Query Frame = 0 

Query: 113  WFASLVH-----LSGRFLPDCPF-------DYVSKWVEAIACHQNDAKTVSRFLQSHIFA 172
            W+A +V+       G F P   +       DYVSKWVEA+AC  ND KTV +FL+ HI +
Sbjct: 971  WYAYIVNYLAVDFMGPFPPSFGYLYILVVVDYVSKWVEAMACKNNDHKTVVKFLKEHILS 1030

[Close]
BLAST of Lag0041289 vs. ExPASy TrEMBL
Match: A0A2N9I071 (Reverse transcriptase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45276 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.1e-09
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 0 

Query: 113  WFASLVH-----LSGRFLPDCPF-------DYVSKWVEAIACHQNDAKTVSRFLQSHIFA 172
            W+A +V+       G F P   +       DYVSKWVEA+AC  ND +TV +FL+ HI +
Sbjct: 1340 WYAYIVNYLAVDFMGPFPPSFGYLYILVAVDYVSKWVEAVACKNNDHRTVVKFLKEHILS 1399

[Close]
BLAST of Lag0041289 vs. ExPASy TrEMBL
Match: A0A2N9GEK9 (Reverse transcriptase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25750 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.1e-09
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 0 

Query: 113  WFASLVH-----LSGRFLPDCPF-------DYVSKWVEAIACHQNDAKTVSRFLQSHIFA 172
            W+A +V+       G F P   +       DYVSKWVEA+AC  ND +TV +FL+ HI +
Sbjct: 1100 WYAYIVNYLAVDFMGPFPPSFGYLYILVAVDYVSKWVEAVACKNNDHRTVVKFLKEHILS 1159

The following BLAST results are available for this feature:
BLAST of Lag0041289 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_024964983.15.5e-1281.82protein NYNRIN-like [Cynara cardunculus var. scolymus][more]
XP_024962120.12.1e-1150.00uncharacterized protein LOC112502446 [Cynara cardunculus var. scolymus][more]
XP_024963106.18.0e-1180.95uncharacterized protein LOC112503277 [Cynara cardunculus var. scolymus][more]
XP_024965836.11.8e-1082.50uncharacterized protein K02A2.6-like [Cynara cardunculus var. scolymus][more]
XP_024962710.13.0e-1047.67uncharacterized protein LOC112502921 [Cynara cardunculus var. scolymus][more]
BLAST of Lag0041289 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0041289 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DR082.1e-0954.39uncharacterized protein LOC111023021 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A803R2M63.6e-0945.83Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A2N9FX666.2e-0948.61Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... [more]
A0A2N9I0718.1e-0947.22Reverse transcriptase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45276 PE=4 SV=1[more]
A0A2N9GEK98.1e-0947.22Reverse transcriptase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25750 PE=4 SV=1[more]
BLAST of Lag0041289 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 109..191
e-value: 5.6E-8
score: 34.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..95
NoneNo IPR availablePANTHERPTHR46148FAMILY NOT NAMEDcoord: 131..177
NoneNo IPR availablePANTHERPTHR46148:SF31PROTEIN NYNRIN-LIKEcoord: 131..177
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 130..185

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0041289.1Lag0041289.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding