Lag0041285 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0041285
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Myb_DNA-bind_3 domain-containing protein
Location	chr13: 14998343 .. 14999041 (+)
RNA-Seq Expression	Lag0041285
Synteny	Lag0041285

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTATCGGACTTGAAGTATTTCGACGTGGTAGTGGTTTTACTTGGAATAGCATCACAGAAACAATTGAAGCAGAACAACCAGCTTGGGAGGTTTTCATTCAGGTAGCTAATTCGTTTTTTTTACACATACCAATATTGATTTGTTCTTGTAATTTTTTTCCCTTGATCAGTCTTATCCAAAAGCTCAACATGTTCGATGGAAGCTAATTCACAACTTTAATGTCTTAAGAGAACTTGTTGAGAAAGATAGAGCAATTGGAGTATTTGCAGAGAGTGCAAAAGAGAAGGTACGTTGTTGGCAAAGGGACGAACCGTTGAATATTAATGACATTGATGAAATGATGGAACAAGAGGAAATTAATCTAGAAAGTTTTGAGGATGAGGACTCTACGAATAGCCAACCCCAAAAAACATCAACAAATCAAGCATGCATCTTCTTCTGTTTCCAAGCGCAATAAGAAGAAGTCAGTTGCAGTTGACTTGATTGGAGAAAAATTAGATATGCTAACAAATTATATGGACAAAGTAGCTATCGTACTCGATAAAGGTATAGACATCCTTAAAATTGAAGTGCATTTCAATTTCTATTCAAATATGTGAAAATATTTCAACAACACTATTTTCATTTTCATTATAGGGAATGATGTAGCTAGAGAGGCAAATGTTATGGCTAGAGAGCATAATCGACGCATTTAG

mRNA sequence

ATGGTTATCGGACTTGAAGTATTTCGACGTGGTAGTGGTTTTACTTGGAATAGCATCACAGAAACAATTGAAGCAGAACAACCAGCTTGGGAGGTTTTCATTCAGTCTTATCCAAAAGCTCAACATGTTCGATGGAAGCTAATTCACAACTTTAATGTCTTAAGAGAACTTGTTGAGAAAGATAGAGCAATTGGAGTATTTGCAGAGAGTGCAAAAGAGAAGAAAGTTTTGAGGATGAGGACTCTACGAATAGCCAACCCCAAAAAACATCAACAAATCAAGCATGCATCTTCTTCTGTTTCCAAGCGCAATAAGAAGAAGTCAGTTGCAGTTGACTTGATTGGAGAAAAATTAGATATGCTAACAAATTATATGGACAAAGTAGCTATCGTACTCGATAAAGGGAATGATGTAGCTAGAGAGGCAAATGTTATGGCTAGAGAGCATAATCGACGCATTTAG

Coding sequence (CDS)

ATGGTTATCGGACTTGAAGTATTTCGACGTGGTAGTGGTTTTACTTGGAATAGCATCACAGAAACAATTGAAGCAGAACAACCAGCTTGGGAGGTTTTCATTCAGTCTTATCCAAAAGCTCAACATGTTCGATGGAAGCTAATTCACAACTTTAATGTCTTAAGAGAACTTGTTGAGAAAGATAGAGCAATTGGAGTATTTGCAGAGAGTGCAAAAGAGAAGAAAGTTTTGAGGATGAGGACTCTACGAATAGCCAACCCCAAAAAACATCAACAAATCAAGCATGCATCTTCTTCTGTTTCCAAGCGCAATAAGAAGAAGTCAGTTGCAGTTGACTTGATTGGAGAAAAATTAGATATGCTAACAAATTATATGGACAAAGTAGCTATCGTACTCGATAAAGGGAATGATGTAGCTAGAGAGGCAAATGTTATGGCTAGAGAGCATAATCGACGCATTTAG

Protein sequence

MVIGLEVFRRGSGFTWNSITETIEAEQPAWEVFIQSYPKAQHVRWKLIHNFNVLRELVEKDRAIGVFAESAKEKKVLRMRTLRIANPKKHQQIKHASSSVSKRNKKKSVAVDLIGEKLDMLTNYMDKVAIVLDKGNDVAREANVMAREHNRRI

Homology

[Close]

BLAST of Lag0041285 vs. NCBI nr
Match: KAF8380727.1 (hypothetical protein HHK36_028217 [Tetracentron sinense])

HSP 1 Score: 72.8 bits (177), Expect = 2.9e-09
Identity = 48/156 (30.77%), Postives = 80/156 (51.28%), Query Frame = 0


Query: 6   EVFRRGSGFTWNSITETIEAEQPAWEVFIQSYPKAQHVRWKLIHNFNVLRELVEKDRAIG 65
           E+ R GSGF+WN +++T +AE   W  +I ++P A+  R+K IHN++ L  +   D+AIG
Sbjct: 366 ELMRNGSGFSWNDMSKTFDAEPAVWRTYIDAHPNAKQFRYKPIHNYDKLLIVCGTDQAIG 425

Query: 66  VFAESAKE----------KKVLRMRTLRIANPKKHQQI---------------KHASSSV 125
           V A + KE          + +  M      + +   +I               +  SSS 
Sbjct: 426 VGAFTPKETSRSFREEEARNLDNMEDFVSLDKEVEGEIGDDLADTCTQPVPASRTTSSSG 485

Query: 126 SKRNKKKSVAVDLIGEKLDMLTNYMDKVAIVLDKGN 137
            KRN K++ + D+I EK++ L N ++K++   DK N
Sbjct: 486 LKRNNKRTQSSDVIAEKIEELGNKIEKLSESFDKSN 521

[Close]

BLAST of Lag0041285 vs. NCBI nr
Match: KAF8402676.1 (hypothetical protein HHK36_010765 [Tetracentron sinense])

HSP 1 Score: 71.6 bits (174), Expect = 6.5e-09
Identity = 49/160 (30.63%), Postives = 78/160 (48.75%), Query Frame = 0


Query: 6   EVFRRGSGFTWNSITETIEAEQPAWEVFIQSYPKAQHVRWKLIHNFNVLRELVEKDRAIG 65
           E+ R GSGF+WN +++T +AE   W  +I ++P A+  R+K IHN++ L  +   D+AIG
Sbjct: 282 ELMRNGSGFSWNDMSKTFDAEPAVWRTYIDAHPYAKQFRYKPIHNYDKLLIVCGTDQAIG 341

Query: 66  VFAESAKEKKVLRMRTLRIANPKKHQQI-----------------------------KHA 125
           V A + KE      R+ R    +K   +                             +  
Sbjct: 342 VGAFTPKETS----RSFREEEARKLDNVEDFVSLDKKVEGETGDDLADTCTQPVPSSRTT 401

Query: 126 SSSVSKRNKKKSVAVDLIGEKLDMLTNYMDKVAIVLDKGN 137
           SSS  KRN K++ + D+I EK+  L N ++K++   DK N
Sbjct: 402 SSSGLKRNNKRTPSSDVIVEKIKELGNKIEKLSESFDKSN 437

[Close]

BLAST of Lag0041285 vs. NCBI nr
Match: KAF8388155.1 (hypothetical protein HHK36_026821 [Tetracentron sinense])

HSP 1 Score: 71.2 bits (173), Expect = 8.5e-09
Identity = 47/156 (30.13%), Postives = 78/156 (50.00%), Query Frame = 0


Query: 6   EVFRRGSGFTWNSITETIEAEQPAWEVFIQSYPKAQHVRWKLIHNFNVLRELVEKDRAIG 65
           E+ R GSGF+WN +++T +AE   W  +I ++P A+  R+K IHN++ L  +   D+A G
Sbjct: 290 ELMRNGSGFSWNDMSKTFDAEPAVWRTYIDAHPDAKQFRYKPIHNYDKLLIVCGTDQATG 349

Query: 66  VFAESAKE--KKVLRMRTLRIANPKKHQQI-----------------------KHASSSV 125
           V A +AKE  +         + N +    +                       +  SSS 
Sbjct: 350 VGAFTAKETSRSFREEEARNLDNMEDFVSLDKEVEGETGDDLADTCTQPVPASRTTSSSG 409

Query: 126 SKRNKKKSVAVDLIGEKLDMLTNYMDKVAIVLDKGN 137
            KRN K++ + D+I EK++ L N ++K++   DK N
Sbjct: 410 LKRNNKRTRSSDVIAEKIEELGNKIEKLSESFDKSN 445

[Close]

BLAST of Lag0041285 vs. NCBI nr
Match: KAF8369317.1 (hypothetical protein HHK36_032673 [Tetracentron sinense])

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-08
Identity = 46/156 (29.49%), Postives = 79/156 (50.64%), Query Frame = 0


Query: 6   EVFRRGSGFTWNSITETIEAEQPAWEVFIQSYPKAQHVRWKLIHNFNVLRELVEKDRAIG 65
           E+ R GSGF+WN +++T +AE   W  +I ++P A+  R+K IHN++ L  +   D+A G
Sbjct: 87  ELIRNGSGFSWNDMSKTFDAESAVWRTYIDAHPDAKQFRYKPIHNYDKLLVVCGTDQATG 146

Query: 66  VFAESAKE----------KKVLRMRTLRIANPKKHQQI---------------KHASSSV 125
           V A + KE          + +  M    + + +   +                +  SSS 
Sbjct: 147 VGAFTPKETSWSFREEEARNLDNMEDFVLLDKEVEGETSDDLADTCTQPVPTSRTTSSSG 206

Query: 126 SKRNKKKSVAVDLIGEKLDMLTNYMDKVAIVLDKGN 137
            KRN K++ + D+I EK++ L N ++K++   DK N
Sbjct: 207 LKRNNKRTRSSDVIAEKIEELGNKIEKLSESFDKSN 242

[Close]

BLAST of Lag0041285 vs. NCBI nr
Match: VFQ97800.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 68.2 bits (165), Expect = 7.2e-08
Identity = 40/142 (28.17%), Postives = 78/142 (54.93%), Query Frame = 0


Query: 6   EVFRRGSGFTWNSITETIEAEQPAWEVFIQSYPKAQHVRWKLIHNFNVLRELVEKDRAIG 65
           ++ + GSGF +N  T+ +EAE+  W+ ++++ PKA  +++  I  + +L EL  KDRA G
Sbjct: 64  DIMQNGSGFGFNFSTKMLEAEEGVWDAYLKAKPKAAFLKYNPIPCYEILDELFGKDRATG 123

Query: 66  VFAESAKEKKVLRMRTLRIANP-----------KKHQQIKHASSSVSKRNKKKSVAVDLI 125
             A SAK++++   +                  K++   + ++S + +  KKK+  VD++
Sbjct: 124 SRAVSAKQRQMQWAKEQNYMEENEEDAVNDEVGKQNNNEESSTSKIEEPKKKKTRMVDVV 183

Query: 126 GEKLDMLTNYMDKVAIVLDKGN 137
            E++ +LT  + +VA  +  GN
Sbjct: 184 SEEISLLTASIGEVATAIKLGN 205

The following BLAST results are available for this feature:

BLAST of Lag0041285 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF8380727.1	2.9e-09	30.77	hypothetical protein HHK36_028217 [Tetracentron sinense]	[more]
KAF8402676.1	6.5e-09	30.63	hypothetical protein HHK36_010765 [Tetracentron sinense]	[more]
KAF8388155.1	8.5e-09	30.13	hypothetical protein HHK36_026821 [Tetracentron sinense]	[more]
KAF8369317.1	1.4e-08	29.49	hypothetical protein HHK36_032673 [Tetracentron sinense]	[more]
VFQ97800.1	7.2e-08	28.17	unnamed protein product [Cuscuta campestris]	[more]

BLAST of Lag0041285 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0041285.1	Lag0041285.1	mRNA