Lag0041279 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0041279
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr13: 14892020 .. 14892496 (-)
RNA-Seq ExpressionLag0041279
SyntenyLag0041279
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATAACCTCTCAGATCTTGGGTTCTTTGGATACCCGTTTACATGGTCAAATCGCAGGCAGGGCTCTTATCTGGTCAAGCTTCGGTTGGATAGGTTTCTAGGGTCAAAAGATTGGTGTCGGGATTGGCAGAGAGCGAAGGTGAGACACCTAACATCCTTGGGCTCTGATCACCGTATGATCCTCCTAGAGTCTACGACTCCGATCACCAAAGGTCCAAGGCGGTTTAATTATAATCCTTCATGGTCGAAGGACGAGTCTTGCTTGAGGTTGGTCAAAGATACTTGGCAGCATAATGTGAGTGGGAGCTATTCGTACAGGGTTACAGAGAAGATCAAAGGAACAAAGATGGCAATCCTTCGGTGGAGGAAGGGTCACAAGTCTAATGCATTAGAAGAAATTCAGAAGCTTGAAAGGATAATTAATGTTGAACTGAATCAGACGCAGCCGGATTTTGCGAAAATCGTGGAGTGTTAG

mRNA sequence

ATGAATAACCTCTCAGATCTTGGGTTCTTTGGATACCCGTTTACATGGTCAAATCGCAGGCAGGGCTCTTATCTGGTCAAGCTTCGGTTGGATAGGTTTCTAGGGTCAAAAGATTGGTGTCGGGATTGGCAGAGAGCGAAGGTGAGACACCTAACATCCTTGGGCTCTGATCACCGTATGATCCTCCTAGAGTCTACGACTCCGATCACCAAAGGTCCAAGGCGGTTTAATTATAATCCTTCATGGTCGAAGGACGAGTCTTGCTTGAGGTTGGTCAAAGATACTTGGCAGCATAATGTGAGTGGGAGCTATTCGTACAGGGTTACAGAGAAGATCAAAGGAACAAAGATGGCAATCCTTCGGTGGAGGAAGGGTCACAAGTCTAATGCATTAGAAGAAATTCAGAAGCTTGAAAGGATAATTAATGTTGAACTGAATCAGACGCAGCCGGATTTTGCGAAAATCGTGGAGTGTTAG

Coding sequence (CDS)

ATGAATAACCTCTCAGATCTTGGGTTCTTTGGATACCCGTTTACATGGTCAAATCGCAGGCAGGGCTCTTATCTGGTCAAGCTTCGGTTGGATAGGTTTCTAGGGTCAAAAGATTGGTGTCGGGATTGGCAGAGAGCGAAGGTGAGACACCTAACATCCTTGGGCTCTGATCACCGTATGATCCTCCTAGAGTCTACGACTCCGATCACCAAAGGTCCAAGGCGGTTTAATTATAATCCTTCATGGTCGAAGGACGAGTCTTGCTTGAGGTTGGTCAAAGATACTTGGCAGCATAATGTGAGTGGGAGCTATTCGTACAGGGTTACAGAGAAGATCAAAGGAACAAAGATGGCAATCCTTCGGTGGAGGAAGGGTCACAAGTCTAATGCATTAGAAGAAATTCAGAAGCTTGAAAGGATAATTAATGTTGAACTGAATCAGACGCAGCCGGATTTTGCGAAAATCGTGGAGTGTTAG

Protein sequence

MNNLSDLGFFGYPFTWSNRRQGSYLVKLRLDRFLGSKDWCRDWQRAKVRHLTSLGSDHRMILLESTTPITKGPRRFNYNPSWSKDESCLRLVKDTWQHNVSGSYSYRVTEKIKGTKMAILRWRKGHKSNALEEIQKLERIINVELNQTQPDFAKIVEC
Homology
BLAST of Lag0041279 vs. NCBI nr
Match: XP_025677954.1 (uncharacterized protein LOC112777779 [Arachis hypogaea])

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-23
Identity = 56/137 (40.88%), Postives = 82/137 (59.85%), Query Frame = 0

Query: 2   NNLSDLGFFGYPFTWSNRRQGSYLVKLRLDRFLGSKDWCRDWQRAKVRHLTSLGSDHRMI 61
           N L D+G  G+PFTW+NRRQG  LVK RLDR+L   +W   +  A V  LT  GSDH  I
Sbjct: 169 NELVDIGMVGHPFTWTNRRQGEDLVKERLDRYLVGMEWKLKFPNAVVHRLTESGSDHAPI 228

Query: 62  LLESTTPITKGPRRFNYNPSWSKDESCLRLVKDTWQHNVSGSYSYRVTEKIKGTKMAILR 121
           L+E+        RRF Y   W  +E   R+V + W+  V GS  + + +K+K  +  +++
Sbjct: 229 LMETEPQSWHSKRRFKYQERWCGEEDVKRIVSEVWRMEVVGSAMFSLAQKLKVCRHRLVQ 288

Query: 122 WRKGHKSNALEEIQKLE 139
           W+K HK+N+ +EI+ L+
Sbjct: 289 WQKTHKTNSRKEIEDLQ 305

BLAST of Lag0041279 vs. NCBI nr
Match: XP_025640859.1 (uncharacterized protein LOC112735543 [Arachis hypogaea])

HSP 1 Score: 120.2 bits (300), Expect = 1.6e-23
Identity = 55/137 (40.15%), Postives = 82/137 (59.85%), Query Frame = 0

Query: 2   NNLSDLGFFGYPFTWSNRRQGSYLVKLRLDRFLGSKDWCRDWQRAKVRHLTSLGSDHRMI 61
           N L D+G  G+PFTW+NRRQG  LVK RLDR+L   +W   +  A V  LT  GSDH  I
Sbjct: 537 NELVDIGMVGHPFTWTNRRQGEDLVKERLDRYLVGMEWKLKFPNAVVHRLTESGSDHAPI 596

Query: 62  LLESTTPITKGPRRFNYNPSWSKDESCLRLVKDTWQHNVSGSYSYRVTEKIKGTKMAILR 121
           L+E+        RRF Y   W  +E   R++ + W+  V GS  + + +K+K  +  +++
Sbjct: 597 LMETEPQSWHSKRRFKYQERWCGEEDVKRIISEVWRMEVVGSAMFSLAQKLKVCRHRLVQ 656

Query: 122 WRKGHKSNALEEIQKLE 139
           W+K HK+N+ +EI+ L+
Sbjct: 657 WQKTHKANSRKEIEDLQ 673

BLAST of Lag0041279 vs. NCBI nr
Match: XP_025675778.1 (uncharacterized protein LOC112776041 [Arachis hypogaea])

HSP 1 Score: 119.0 bits (297), Expect = 3.7e-23
Identity = 55/137 (40.15%), Postives = 81/137 (59.12%), Query Frame = 0

Query: 2   NNLSDLGFFGYPFTWSNRRQGSYLVKLRLDRFLGSKDWCRDWQRAKVRHLTSLGSDHRMI 61
           N L D+G  G+PFTW+NRRQG  LVK R DR+L   +W   +  A V  LT  GSDH  I
Sbjct: 100 NELVDIGMVGHPFTWTNRRQGEDLVKERFDRYLVGMEWKLKFPNAVVHRLTESGSDHAPI 159

Query: 62  LLESTTPITKGPRRFNYNPSWSKDESCLRLVKDTWQHNVSGSYSYRVTEKIKGTKMAILR 121
           L+E+        RRF Y   W  +E   R+V + W+  V GS  + + +K+K  +  +++
Sbjct: 160 LMETEPQSWHSKRRFKYQERWCGEEDVKRIVSEVWRMEVVGSAMFSLAQKLKVCRHRLVQ 219

Query: 122 WRKGHKSNALEEIQKLE 139
           W+K HK+N+ +EI+ L+
Sbjct: 220 WQKTHKANSRKEIEDLQ 236

BLAST of Lag0041279 vs. NCBI nr
Match: XP_025628190.1 (uncharacterized protein LOC112721335 [Arachis hypogaea])

HSP 1 Score: 119.0 bits (297), Expect = 3.7e-23
Identity = 55/137 (40.15%), Postives = 82/137 (59.85%), Query Frame = 0

Query: 2   NNLSDLGFFGYPFTWSNRRQGSYLVKLRLDRFLGSKDWCRDWQRAKVRHLTSLGSDHRMI 61
           N L D+G  G+PFTW+NRRQG  LVK RLDR+L   +W   +  A V  LT  GSDH  I
Sbjct: 169 NELVDIGMVGHPFTWTNRRQGEDLVKERLDRYLVRMEWKLKFPNAVVHRLTESGSDHAPI 228

Query: 62  LLESTTPITKGPRRFNYNPSWSKDESCLRLVKDTWQHNVSGSYSYRVTEKIKGTKMAILR 121
           L+E+        RRF Y   W  +E   R+V + W+  V GS  + + +K+K  +  +++
Sbjct: 229 LMETEPQSWHSKRRFKYQKRWCGEEDVKRIVSEVWRMEVVGSAMFSLAQKLKVCRYRLVQ 288

Query: 122 WRKGHKSNALEEIQKLE 139
           W++ HK+N+ +EI+ L+
Sbjct: 289 WQQTHKANSRKEIEDLQ 305

BLAST of Lag0041279 vs. NCBI nr
Match: XP_027086545.1 (uncharacterized protein LOC113708282 [Coffea arabica])

HSP 1 Score: 118.2 bits (295), Expect = 6.2e-23
Identity = 55/153 (35.95%), Postives = 94/153 (61.44%), Query Frame = 0

Query: 2   NNLSDLGFFGYPFTWSNRRQGSYLVKLRLDRFLGSKDWCRDWQRAKVRHLTSLGSDHRMI 61
           NNL D+GF G P+TWSN   G   ++ RLDR L S +W + + +AK  H+ ++GSDH M+
Sbjct: 646 NNLVDIGFTGNPWTWSNNWDGEGEIRQRLDRGLSSINWNQVFDKAKCEHVETVGSDHSML 705

Query: 62  LLESTTPITKGPRRFNYNPSWSKDESCLRLVKDTWQHNVSGSYSYRVTEKIKGTKMAILR 121
           L++S   + K   RF ++  W K E   ++V+  W+  V G+  YR+T +I   ++A+L+
Sbjct: 706 LIDSWPRMDKKRSRFFFDKRWLKREGISQVVEQAWKQTVEGNRMYRITRQIANCRVALLK 765

Query: 122 WRKGHKSNALEEIQKLERIINVELNQTQPDFAK 155
           W+   K N+L+ I ++++ I  E+ +++   AK
Sbjct: 766 WKNNFKGNSLQRINQVKQQIK-EIKESKESGAK 797

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_025677954.11.3e-2340.88uncharacterized protein LOC112777779 [Arachis hypogaea][more]
XP_025640859.11.6e-2340.15uncharacterized protein LOC112735543 [Arachis hypogaea][more]
XP_025675778.13.7e-2340.15uncharacterized protein LOC112776041 [Arachis hypogaea][more]
XP_025628190.13.7e-2340.15uncharacterized protein LOC112721335 [Arachis hypogaea][more]
XP_027086545.16.2e-2335.95uncharacterized protein LOC113708282 [Coffea arabica][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 127..147
NoneNo IPR availablePANTHERPTHR33710:SF31SUBFAMILY NOT NAMEDcoord: 2..145
NoneNo IPR availablePANTHERPTHR33710BNAC02G09200D PROTEINcoord: 2..145
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10Endonuclease/exonuclease/phosphatasecoord: 2..64
e-value: 7.1E-6
score: 27.9
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 5..64

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0041279.1Lag0041279.1mRNA