Lag0041279 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0041279
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr13: 14892020 .. 14892496 (-)
RNA-Seq Expression	Lag0041279
Synteny	Lag0041279

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAACCTCTCAGATCTTGGGTTCTTTGGATACCCGTTTACATGGTCAAATCGCAGGCAGGGCTCTTATCTGGTCAAGCTTCGGTTGGATAGGTTTCTAGGGTCAAAAGATTGGTGTCGGGATTGGCAGAGAGCGAAGGTGAGACACCTAACATCCTTGGGCTCTGATCACCGTATGATCCTCCTAGAGTCTACGACTCCGATCACCAAAGGTCCAAGGCGGTTTAATTATAATCCTTCATGGTCGAAGGACGAGTCTTGCTTGAGGTTGGTCAAAGATACTTGGCAGCATAATGTGAGTGGGAGCTATTCGTACAGGGTTACAGAGAAGATCAAAGGAACAAAGATGGCAATCCTTCGGTGGAGGAAGGGTCACAAGTCTAATGCATTAGAAGAAATTCAGAAGCTTGAAAGGATAATTAATGTTGAACTGAATCAGACGCAGCCGGATTTTGCGAAAATCGTGGAGTGTTAG

mRNA sequence

ATGAATAACCTCTCAGATCTTGGGTTCTTTGGATACCCGTTTACATGGTCAAATCGCAGGCAGGGCTCTTATCTGGTCAAGCTTCGGTTGGATAGGTTTCTAGGGTCAAAAGATTGGTGTCGGGATTGGCAGAGAGCGAAGGTGAGACACCTAACATCCTTGGGCTCTGATCACCGTATGATCCTCCTAGAGTCTACGACTCCGATCACCAAAGGTCCAAGGCGGTTTAATTATAATCCTTCATGGTCGAAGGACGAGTCTTGCTTGAGGTTGGTCAAAGATACTTGGCAGCATAATGTGAGTGGGAGCTATTCGTACAGGGTTACAGAGAAGATCAAAGGAACAAAGATGGCAATCCTTCGGTGGAGGAAGGGTCACAAGTCTAATGCATTAGAAGAAATTCAGAAGCTTGAAAGGATAATTAATGTTGAACTGAATCAGACGCAGCCGGATTTTGCGAAAATCGTGGAGTGTTAG

Coding sequence (CDS)

ATGAATAACCTCTCAGATCTTGGGTTCTTTGGATACCCGTTTACATGGTCAAATCGCAGGCAGGGCTCTTATCTGGTCAAGCTTCGGTTGGATAGGTTTCTAGGGTCAAAAGATTGGTGTCGGGATTGGCAGAGAGCGAAGGTGAGACACCTAACATCCTTGGGCTCTGATCACCGTATGATCCTCCTAGAGTCTACGACTCCGATCACCAAAGGTCCAAGGCGGTTTAATTATAATCCTTCATGGTCGAAGGACGAGTCTTGCTTGAGGTTGGTCAAAGATACTTGGCAGCATAATGTGAGTGGGAGCTATTCGTACAGGGTTACAGAGAAGATCAAAGGAACAAAGATGGCAATCCTTCGGTGGAGGAAGGGTCACAAGTCTAATGCATTAGAAGAAATTCAGAAGCTTGAAAGGATAATTAATGTTGAACTGAATCAGACGCAGCCGGATTTTGCGAAAATCGTGGAGTGTTAG

Protein sequence

MNNLSDLGFFGYPFTWSNRRQGSYLVKLRLDRFLGSKDWCRDWQRAKVRHLTSLGSDHRMILLESTTPITKGPRRFNYNPSWSKDESCLRLVKDTWQHNVSGSYSYRVTEKIKGTKMAILRWRKGHKSNALEEIQKLERIINVELNQTQPDFAKIVEC

Homology

[Close]

BLAST of Lag0041279 vs. NCBI nr
Match: XP_025677954.1 (uncharacterized protein LOC112777779 [Arachis hypogaea])

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-23
Identity = 56/137 (40.88%), Postives = 82/137 (59.85%), Query Frame = 0


Query: 2   NNLSDLGFFGYPFTWSNRRQGSYLVKLRLDRFLGSKDWCRDWQRAKVRHLTSLGSDHRMI 61
           N L D+G  G+PFTW+NRRQG  LVK RLDR+L   +W   +  A V  LT  GSDH  I
Sbjct: 169 NELVDIGMVGHPFTWTNRRQGEDLVKERLDRYLVGMEWKLKFPNAVVHRLTESGSDHAPI 228

Query: 62  LLESTTPITKGPRRFNYNPSWSKDESCLRLVKDTWQHNVSGSYSYRVTEKIKGTKMAILR 121
           L+E+        RRF Y   W  +E   R+V + W+  V GS  + + +K+K  +  +++
Sbjct: 229 LMETEPQSWHSKRRFKYQERWCGEEDVKRIVSEVWRMEVVGSAMFSLAQKLKVCRHRLVQ 288

Query: 122 WRKGHKSNALEEIQKLE 139
           W+K HK+N+ +EI+ L+
Sbjct: 289 WQKTHKTNSRKEIEDLQ 305

[Close]

BLAST of Lag0041279 vs. NCBI nr
Match: XP_025640859.1 (uncharacterized protein LOC112735543 [Arachis hypogaea])

HSP 1 Score: 120.2 bits (300), Expect = 1.6e-23
Identity = 55/137 (40.15%), Postives = 82/137 (59.85%), Query Frame = 0


Query: 2   NNLSDLGFFGYPFTWSNRRQGSYLVKLRLDRFLGSKDWCRDWQRAKVRHLTSLGSDHRMI 61
           N L D+G  G+PFTW+NRRQG  LVK RLDR+L   +W   +  A V  LT  GSDH  I
Sbjct: 537 NELVDIGMVGHPFTWTNRRQGEDLVKERLDRYLVGMEWKLKFPNAVVHRLTESGSDHAPI 596

Query: 62  LLESTTPITKGPRRFNYNPSWSKDESCLRLVKDTWQHNVSGSYSYRVTEKIKGTKMAILR 121
           L+E+        RRF Y   W  +E   R++ + W+  V GS  + + +K+K  +  +++
Sbjct: 597 LMETEPQSWHSKRRFKYQERWCGEEDVKRIISEVWRMEVVGSAMFSLAQKLKVCRHRLVQ 656

Query: 122 WRKGHKSNALEEIQKLE 139
           W+K HK+N+ +EI+ L+
Sbjct: 657 WQKTHKANSRKEIEDLQ 673

[Close]

BLAST of Lag0041279 vs. NCBI nr
Match: XP_025675778.1 (uncharacterized protein LOC112776041 [Arachis hypogaea])

HSP 1 Score: 119.0 bits (297), Expect = 3.7e-23
Identity = 55/137 (40.15%), Postives = 81/137 (59.12%), Query Frame = 0


Query: 2   NNLSDLGFFGYPFTWSNRRQGSYLVKLRLDRFLGSKDWCRDWQRAKVRHLTSLGSDHRMI 61
           N L D+G  G+PFTW+NRRQG  LVK R DR+L   +W   +  A V  LT  GSDH  I
Sbjct: 100 NELVDIGMVGHPFTWTNRRQGEDLVKERFDRYLVGMEWKLKFPNAVVHRLTESGSDHAPI 159

Query: 62  LLESTTPITKGPRRFNYNPSWSKDESCLRLVKDTWQHNVSGSYSYRVTEKIKGTKMAILR 121
           L+E+        RRF Y   W  +E   R+V + W+  V GS  + + +K+K  +  +++
Sbjct: 160 LMETEPQSWHSKRRFKYQERWCGEEDVKRIVSEVWRMEVVGSAMFSLAQKLKVCRHRLVQ 219

Query: 122 WRKGHKSNALEEIQKLE 139
           W+K HK+N+ +EI+ L+
Sbjct: 220 WQKTHKANSRKEIEDLQ 236

[Close]

BLAST of Lag0041279 vs. NCBI nr
Match: XP_025628190.1 (uncharacterized protein LOC112721335 [Arachis hypogaea])

HSP 1 Score: 119.0 bits (297), Expect = 3.7e-23
Identity = 55/137 (40.15%), Postives = 82/137 (59.85%), Query Frame = 0


Query: 2   NNLSDLGFFGYPFTWSNRRQGSYLVKLRLDRFLGSKDWCRDWQRAKVRHLTSLGSDHRMI 61
           N L D+G  G+PFTW+NRRQG  LVK RLDR+L   +W   +  A V  LT  GSDH  I
Sbjct: 169 NELVDIGMVGHPFTWTNRRQGEDLVKERLDRYLVRMEWKLKFPNAVVHRLTESGSDHAPI 228

Query: 62  LLESTTPITKGPRRFNYNPSWSKDESCLRLVKDTWQHNVSGSYSYRVTEKIKGTKMAILR 121
           L+E+        RRF Y   W  +E   R+V + W+  V GS  + + +K+K  +  +++
Sbjct: 229 LMETEPQSWHSKRRFKYQKRWCGEEDVKRIVSEVWRMEVVGSAMFSLAQKLKVCRYRLVQ 288

Query: 122 WRKGHKSNALEEIQKLE 139
           W++ HK+N+ +EI+ L+
Sbjct: 289 WQQTHKANSRKEIEDLQ 305

[Close]

BLAST of Lag0041279 vs. NCBI nr
Match: XP_027086545.1 (uncharacterized protein LOC113708282 [Coffea arabica])

HSP 1 Score: 118.2 bits (295), Expect = 6.2e-23
Identity = 55/153 (35.95%), Postives = 94/153 (61.44%), Query Frame = 0


Query: 2   NNLSDLGFFGYPFTWSNRRQGSYLVKLRLDRFLGSKDWCRDWQRAKVRHLTSLGSDHRMI 61
           NNL D+GF G P+TWSN   G   ++ RLDR L S +W + + +AK  H+ ++GSDH M+
Sbjct: 646 NNLVDIGFTGNPWTWSNNWDGEGEIRQRLDRGLSSINWNQVFDKAKCEHVETVGSDHSML 705

Query: 62  LLESTTPITKGPRRFNYNPSWSKDESCLRLVKDTWQHNVSGSYSYRVTEKIKGTKMAILR 121
           L++S   + K   RF ++  W K E   ++V+  W+  V G+  YR+T +I   ++A+L+
Sbjct: 706 LIDSWPRMDKKRSRFFFDKRWLKREGISQVVEQAWKQTVEGNRMYRITRQIANCRVALLK 765

Query: 122 WRKGHKSNALEEIQKLERIINVELNQTQPDFAK 155
           W+   K N+L+ I ++++ I  E+ +++   AK
Sbjct: 766 WKNNFKGNSLQRINQVKQQIK-EIKESKESGAK 797

The following BLAST results are available for this feature:

BLAST of Lag0041279 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_025677954.1	1.3e-23	40.88	uncharacterized protein LOC112777779 [Arachis hypogaea]	[more]
XP_025640859.1	1.6e-23	40.15	uncharacterized protein LOC112735543 [Arachis hypogaea]	[more]
XP_025675778.1	3.7e-23	40.15	uncharacterized protein LOC112776041 [Arachis hypogaea]	[more]
XP_025628190.1	3.7e-23	40.15	uncharacterized protein LOC112721335 [Arachis hypogaea]	[more]
XP_027086545.1	6.2e-23	35.95	uncharacterized protein LOC113708282 [Coffea arabica]	[more]

BLAST of Lag0041279 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 127..147
None	No IPR available	PANTHER	PTHR33710:SF31	SUBFAMILY NOT NAMED	coord: 2..145
None	No IPR available	PANTHER	PTHR33710	BNAC02G09200D PROTEIN	coord: 2..145
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 2..64 e-value: 7.1E-6 score: 27.9
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 5..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0041279.1	Lag0041279.1	mRNA