
Lag0041271 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGACGCCCATTCCACCAACAAAACTGACACCGAAAAGCTCACGACGATTTCTCTTGACCGGAATTGAGGAGAAGAAAGATCATCACAGTACTGTAATTTATCATCAGCTTCGCCTTGGAACCAAGCTCTGCATCGTTCTTTGCTCTCCTTCCTCTGTCAAAGAAGTCCTCCGCCACCAAGAAACCGTCTATTGGGGTTACACATATTTACCAACGGTTCGAATTTCATCGTGAAATCCACAAAGTTGCAGTACAGATTTACGACGAAGAGATTATGCTCCGTAGACTCCTAAATTCATGGTTTAGGAGTTTTTAATGGAATTAAAATAATTCTTGGGTTTCTTTTTTATTTTTGAAATGGTTTAGGAGAAATTAATTAATCATATGCTTAGGTTCTATAAATGTTTTGTAATTGAAATATTGTTTTACTATTTGCAATGCTGAAACCCACTTTGTTGATGTCTATTGGGGTTCCGGCCGATTGGAATACGCCTTTAATCTTCCATGAAGTGCTTCAAGTTTAAATTGGGTCTCTTCTCCCTGGAAAGAAGTTTGTGTTGGGCAATTTATTTTAATTTAATTTCTTTTTCCCAGCTATGATGTTGTAGCCATTACTGTGAGAACCATTTTACCAGAACTGAAATGTCATTTGAAGAAAAATTTGGGCACTCTCTTTTATTTGAATGTCGGTATGGTTGGTAAATTAAATTTAAAACTCATATAGACACATCCTTAATACAAACACATCCACACTCCACTTCTTTTCTGTGATTTTATCAAATTGTAAGTTTCTATCAGATGCTGCATATGGTTTGAACTTGTGTGTGTTAAACTTATTTTGTTGATTGTGGTGTGGTGTTCATACGTGTAGGTTGAGGCACCCAAGAAAAAACGCAGTAAATCTTTATATGAAAAAGCCACAGACACTGGTGTGGATCCTCGAGAGGCTGCGAAGAGACTAAACATTGATTGGGACACTACAGCTAAGATCGAAGATCCGGAAGTGCCTGTTGTTGTGGTTTGTTTTCTTGGCCCATCATCAAAGACACTGTGCTTATGTTCCTTATTTTAG ATGACGCCCATTCCACCAACAAAACTGACACCGAAAAGCTCACGACGATTTCTCTTGACCGGAATTGAGGAGAAGAAAGATCATCACAGTACTGTAATTTATCATCAGCTTCGCCTTGGAACCAAGCTCTGCATCGTTCTTTGCTCTCCTTCCTCTGTCAAAGAAGTCCTCCGCCACCAAGAAACCGTCTATTGGGGTTACACATATTTACCAACGGTTGAGGCACCCAAGAAAAAACGCAGTAAATCTTTATATGAAAAAGCCACAGACACTGGTGTGGATCCTCGAGAGGCTGCGAAGAGACTAAACATTGATTGGGACACTACAGCTAAGATCGAAGATCCGGAAGTGCCTGTTGTTGTGGTTTGTTTTCTTGGCCCATCATCAAAGACACTGTGCTTATGTTCCTTATTTTAG ATGACGCCCATTCCACCAACAAAACTGACACCGAAAAGCTCACGACGATTTCTCTTGACCGGAATTGAGGAGAAGAAAGATCATCACAGTACTGTAATTTATCATCAGCTTCGCCTTGGAACCAAGCTCTGCATCGTTCTTTGCTCTCCTTCCTCTGTCAAAGAAGTCCTCCGCCACCAAGAAACCGTCTATTGGGGTTACACATATTTACCAACGGTTGAGGCACCCAAGAAAAAACGCAGTAAATCTTTATATGAAAAAGCCACAGACACTGGTGTGGATCCTCGAGAGGCTGCGAAGAGACTAAACATTGATTGGGACACTACAGCTAAGATCGAAGATCCGGAAGTGCCTGTTGTTGTGGTTTGTTTTCTTGGCCCATCATCAAAGACACTGTGCTTATGTTCCTTATTTTAG MTPIPPTKLTPKSSRRFLLTGIEEKKDHHSTVIYHQLRLGTKLCIVLCSPSSVKEVLRHQETVYWGYTYLPTVEAPKKKRSKSLYEKATDTGVDPREAAKRLNIDWDTTAKIEDPEVPVVVVCFLGPSSKTLCLCSLF Homology
BLAST of Lag0041271 vs. NCBI nr
Match: XP_008439416.1 (PREDICTED: ycf3-interacting protein 1, chloroplastic isoform X2 [Cucumis melo]) HSP 1 Score: 92.8 bits (229), Expect = 2.5e-15 Identity = 48/66 (72.73%), Postives = 52/66 (78.79%), Query Frame = 0
BLAST of Lag0041271 vs. NCBI nr
Match: XP_022762565.1 (ycf3-interacting protein 1, chloroplastic isoform X3 [Durio zibethinus]) HSP 1 Score: 85.5 bits (210), Expect = 3.9e-13 Identity = 45/71 (63.38%), Postives = 50/71 (70.42%), Query Frame = 0
BLAST of Lag0041271 vs. NCBI nr
Match: XP_022762563.1 (ycf3-interacting protein 1, chloroplastic isoform X1 [Durio zibethinus]) HSP 1 Score: 84.3 bits (207), Expect = 8.7e-13 Identity = 44/68 (64.71%), Postives = 49/68 (72.06%), Query Frame = 0
BLAST of Lag0041271 vs. NCBI nr
Match: OMO68908.1 (hypothetical protein CCACVL1_19773 [Corchorus capsularis]) HSP 1 Score: 81.3 bits (199), Expect = 7.4e-12 Identity = 42/60 (70.00%), Postives = 45/60 (75.00%), Query Frame = 0
BLAST of Lag0041271 vs. NCBI nr
Match: XP_010665471.1 (PREDICTED: ycf3-interacting protein 1, chloroplastic isoform X2 [Vitis vinifera]) HSP 1 Score: 80.9 bits (198), Expect = 9.7e-12 Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 0
BLAST of Lag0041271 vs. ExPASy Swiss-Prot
Match: Q9LU01 (Ycf3-interacting protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=Y3IP1 PE=1 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 8.5e-11 Identity = 31/59 (52.54%), Postives = 43/59 (72.88%), Query Frame = 0
BLAST of Lag0041271 vs. ExPASy Swiss-Prot
Match: B8AAV3 (Protein CHLOROPLAST ENHANCING STRESS TOLERANCE, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=CEST PE=3 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 4.7e-09 Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 0
BLAST of Lag0041271 vs. ExPASy Swiss-Prot
Match: Q5VQK9 (Protein CHLOROPLAST ENHANCING STRESS TOLERANCE, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CEST PE=2 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 4.7e-09 Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 0
BLAST of Lag0041271 vs. ExPASy Swiss-Prot
Match: E5KCJ8 (Ycf3-interacting protein 1, chloroplastic OS=Nicotiana tabacum OX=4097 PE=1 SV=2) HSP 1 Score: 59.3 bits (142), Expect = 3.9e-08 Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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