Lag0041269 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0041269
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotransposon protein, putative, unclassified
Locationchr13: 14795735 .. 14796106 (+)
RNA-Seq ExpressionLag0041269
SyntenyLag0041269
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGGGCTGGATCTATTGAAAAAAGGCCTTGGAAGGCAGGTTGGGGATGGAAGATCTACTATGGTGATGAGGGATCCTTGGATACCTCGCCCCCATTCTTTTAAAGTTGTTGGAGTTAAAATAGATTGTGGTGAGATGAAAGTAGGAGAATGTATTTTGTTGTCTGGTCATTGGGATATTCCTAAGCTACAACAGTTCCTATATGAGGAAGATGTTCAGGAAATAATAAGGATCCCTATCAGTATGACGATGTCGAATTGCTGGATATGGCATTATGATAAGTACGGGAGTTATACTGTTAAGAACGGTTATAAATTGGGAATGATTTTGGCTAAGGAGGCTTCAACCTCGGATTCTAATATCTACTGA

mRNA sequence

ATGTGGGGGCTGGATCTATTGAAAAAAGGCCTTGGAAGGCAGGTTGGGGATGGAAGATCTACTATGGTGATGAGGGATCCTTGGATACCTCGCCCCCATTCTTTTAAAGTTGTTGGAGTTAAAATAGATTGTGGTGAGATGAAAGTAGGAGAATGTATTTTGTTGTCTGGTCATTGGGATATTCCTAAGCTACAACAGTTCCTATATGAGGAAGATGTTCAGGAAATAATAAGGATCCCTATCAGTATGACGATGTCGAATTGCTGGATATGGCATTATGATAAGTACGGGAGTTATACTGTTAAGAACGGTTATAAATTGGGAATGATTTTGGCTAAGGAGGCTTCAACCTCGGATTCTAATATCTACTGA

Coding sequence (CDS)

ATGTGGGGGCTGGATCTATTGAAAAAAGGCCTTGGAAGGCAGGTTGGGGATGGAAGATCTACTATGGTGATGAGGGATCCTTGGATACCTCGCCCCCATTCTTTTAAAGTTGTTGGAGTTAAAATAGATTGTGGTGAGATGAAAGTAGGAGAATGTATTTTGTTGTCTGGTCATTGGGATATTCCTAAGCTACAACAGTTCCTATATGAGGAAGATGTTCAGGAAATAATAAGGATCCCTATCAGTATGACGATGTCGAATTGCTGGATATGGCATTATGATAAGTACGGGAGTTATACTGTTAAGAACGGTTATAAATTGGGAATGATTTTGGCTAAGGAGGCTTCAACCTCGGATTCTAATATCTACTGA

Protein sequence

MWGLDLLKKGLGRQVGDGRSTMVMRDPWIPRPHSFKVVGVKIDCGEMKVGECILLSGHWDIPKLQQFLYEEDVQEIIRIPISMTMSNCWIWHYDKYGSYTVKNGYKLGMILAKEASTSDSNIY
Homology
BLAST of Lag0041269 vs. NCBI nr
Match: XP_021801569.1 (uncharacterized protein LOC110745747 isoform X1 [Prunus avium])

HSP 1 Score: 106.7 bits (265), Expect = 1.5e-19
Identity = 49/117 (41.88%), Postives = 72/117 (61.54%), Query Frame = 0

Query: 1   MWGLDLLKKGLGRQVGDGRSTMVMRDPWIPRPHSFKVVGVKIDCGEMKVGECILLSGHWD 60
           +WG +LL  GL + +GDG+ T+V  D WIP P+SF+ +  ++   E KV + I   G+W+
Sbjct: 33  IWGRELLLSGLRKGIGDGQETLVYGDAWIPSPNSFRPISPQVLDQETKVSDFIFPVGNWN 92

Query: 61  IPKLQQFLYEEDVQEIIRIPISMTM-SNCWIWHYDKYGSYTVKNGYKLGMILAKEAS 117
           +  L     EEDV+ I  IP+S+    + WIWHY   G+Y+VK+GY+L M   KE S
Sbjct: 93  VDLLNLCFQEEDVKAITSIPLSVNFHKDRWIWHYTTNGTYSVKSGYRLEMSKKKECS 149

BLAST of Lag0041269 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 104.8 bits (260), Expect = 5.6e-19
Identity = 47/122 (38.52%), Postives = 71/122 (58.20%), Query Frame = 0

Query: 1    MWGLDLLKKGLGRQVGDGRSTMVMRDPWIPRPHSFKVVGVKIDCGEMKVGECILLSGHWD 60
            +WG DLL KGL  +VG+G +     DPW+PRP +FK +       +  V   I   G+WD
Sbjct: 1005 LWGRDLLVKGLRLRVGNGSTIKAFSDPWLPRPTTFKPLRFNNGALDTTVASFITADGNWD 1064

Query: 61   IPKLQQFLYEEDVQEIIRIPI-SMTMSNCWIWHYDKYGSYTVKNGYKLGMILAKEASTSD 120
            +  +      ED   I+ +PI S  + + W+WHYDK G+Y+V++GYKL M L   A+++ 
Sbjct: 1065 VTSISHSFCNEDRDLILSMPISSYNLQDSWLWHYDKRGNYSVRSGYKLYMHLKCNATSAS 1124

Query: 121  SN 122
            +N
Sbjct: 1125 TN 1126

BLAST of Lag0041269 vs. NCBI nr
Match: CAB4282349.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 104.4 bits (259), Expect = 7.3e-19
Identity = 48/117 (41.03%), Postives = 70/117 (59.83%), Query Frame = 0

Query: 1   MWGLDLLKKGLGRQVGDGRSTMVMRDPWIPRPHSFKVVGVKIDCGEMKVGECILLSGHWD 60
           +WG +LL  GL +++GDG+ T+V  D WIPRP+ F+ +  ++   E KV   I   G+W+
Sbjct: 33  IWGCELLLSGLRKRIGDGQETLVYGDAWIPRPNYFRPISPQVLDQETKVSALIFPIGNWN 92

Query: 61  IPKLQQFLYEEDVQEIIRIPISMTMSN-CWIWHYDKYGSYTVKNGYKLGMILAKEAS 117
           +  L    + EDV+ I  IP+S+   N  WIWHY   G Y VK+GY+L +   KE S
Sbjct: 93  VDLLNLCFHAEDVKAITSIPLSVNYHNDRWIWHYTTNGVYYVKSGYRLAISRKKECS 149

BLAST of Lag0041269 vs. NCBI nr
Match: CAB4312759.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-18
Identity = 48/117 (41.03%), Postives = 69/117 (58.97%), Query Frame = 0

Query: 1   MWGLDLLKKGLGRQVGDGRSTMVMRDPWIPRPHSFKVVGVKIDCGEMKVGECILLSGHWD 60
           +WG +LL  GL +++GDG+ T+V  D WIPRP+ F+ +  K+   E KV   I   G+W+
Sbjct: 33  IWGCELLLSGLRKRIGDGQETLVYGDAWIPRPNYFRPISPKVLNQETKVSALIFPIGNWN 92

Query: 61  IPKLQQFLYEEDVQEIIRIPISMTMSN-CWIWHYDKYGSYTVKNGYKLGMILAKEAS 117
           +  L    + E V+ I  IP+S+   N  WIWHY   G Y VK+GY+L +   KE S
Sbjct: 93  VDLLNLCFHAEGVKAITSIPLSVNYHNDRWIWHYTTNGVYYVKSGYRLAISRKKECS 149

BLAST of Lag0041269 vs. NCBI nr
Match: AAK39575.1 (putative reverse transcriptase [Oryza sativa Japonica Group] >AAP54636.1 retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group])

HSP 1 Score: 100.9 bits (250), Expect = 8.0e-18
Identity = 48/123 (39.02%), Postives = 76/123 (61.79%), Query Frame = 0

Query: 2   WGLDLLKKGLGRQVGDGRSTMVMRDPWIPRPHSFKVVGVKIDCGEMKVGECILLSGHWDI 61
           +GLDLLKKG+  +VG+G S  + RDPW+PR HS + +  K +C    V + I   G WD+
Sbjct: 323 YGLDLLKKGIIWRVGNGNSIRIWRDPWLPRDHSRRPITGKANCRLKWVSDLITEDGSWDV 382

Query: 62  PKLQQFLYEEDVQEIIRIPISMTMSNCWI-WHYDKYGSYTVKNGYKLG--MILAKEASTS 121
           PK+ Q+ +  D + I+ I IS      +I WH DK G ++V++ Y+L   ++  +E+S+S
Sbjct: 383 PKIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESSSS 442

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_021801569.11.5e-1941.88uncharacterized protein LOC110745747 isoform X1 [Prunus avium][more]
XP_022158377.15.6e-1938.52uncharacterized protein LOC111024874 [Momordica charantia][more]
CAB4282349.17.3e-1941.03unnamed protein product [Prunus armeniaca][more]
CAB4312759.11.6e-1841.03unnamed protein product [Prunus armeniaca][more]
AAK39575.18.0e-1839.02putative reverse transcriptase [Oryza sativa Japonica Group] >AAP54636.1 retrotr... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0041269.1Lag0041269.1mRNA