Lag0041189 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0041189
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr13: 13456701 .. 13457126 (-)
RNA-Seq Expression	Lag0041189
Synteny	Lag0041189

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTTCAAGACTTCCTCAATAGTCGCTGTCATGAACAAGTCTTACATTAGTTCTACTGCCCATTGTTGCTTAAGTGGACTGAGGTTGCAAGAAGATAAAGCTTCTGTCATTGCAAGCGAAGAAACAACATTGCAGGGGGTATATACTAATGACAAGTTTATTGTTAAGTATAACCTTTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGATTGAGACTATAACTATGGAAGAAAGAATGGCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAACTGCGCAACTAAAGAGTCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACACAAGTCATAAAAAATCATGACAAAGGAAAGACTACAGTGCAAGATACATGGCTAAAATAA

mRNA sequence

ATGTCGTTCAAGACTTCCTCAATAGTCGCTGTCATGAACAAGTCTTACATTAGTTCTACTGCCCATTGTTGCTTAAGTGGACTGAGGTTGCAAGAAGATAAAGCTTCTGTCATTGCAAGCGAAGAAACAACATTGCAGGGGGTATATACTAATGACAAGTTTATTGTTAAGTATAACCTTTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGATTGAGACTATAACTATGGAAGAAAGAATGGCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAACTGCGCAACTAAAGAGTCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACACAAGTCATAAAAAATCATGACAAAGGAAAGACTACAGTGCAAGATACATGGCTAAAATAA

Coding sequence (CDS)

ATGTCGTTCAAGACTTCCTCAATAGTCGCTGTCATGAACAAGTCTTACATTAGTTCTACTGCCCATTGTTGCTTAAGTGGACTGAGGTTGCAAGAAGATAAAGCTTCTGTCATTGCAAGCGAAGAAACAACATTGCAGGGGGTATATACTAATGACAAGTTTATTGTTAAGTATAACCTTTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGATTGAGACTATAACTATGGAAGAAAGAATGGCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAACTGCGCAACTAAAGAGTCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACACAAGTCATAAAAAATCATGACAAAGGAAAGACTACAGTGCAAGATACATGGCTAAAATAA

Protein sequence

MSFKTSSIVAVMNKSYISSTAHCCLSGLRLQEDKASVIASEETTLQGVYTNDKFIVKYNLLFEPDSDVVTVMMIETITMEERMAEMQEHINTLMKAIEEKDSQTAQLKSQIENQHIAESSQTQVIKNHDKGKTTVQDTWLK

Homology

[Close]

BLAST of Lag0041189 vs. NCBI nr
Match: TYK07338.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 5.1e-08
Identity = 36/75 (48.00%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 64  PDSDVVTVMMIETITMEERMAEMQEHINTLMKAIEEKDSQTAQLKSQIENQHIAESSQTQ 123
           P  ++++VM+ +  T E RMAE+++ +N LMKA+EE+D + A LK+ IE+   AESS T 
Sbjct: 77  PHLNIMSVMVTDVDTSENRMAELEKKVNMLMKAVEERDYEIASLKNHIESHDAAESSHTH 136

Query: 124 VIKNHDKGKTTVQDT 139
            IKN DKGKT +Q++
Sbjct: 137 TIKNVDKGKTIIQES 151

[Close]

BLAST of Lag0041189 vs. NCBI nr
Match: KAA0050518.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 1.9e-07
Identity = 35/75 (46.67%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 64  PDSDVVTVMMIETITMEERMAEMQEHINTLMKAIEEKDSQTAQLKSQIENQHIAESSQTQ 123
           P  ++++VM+ +  T E+RMAE+++ +N LMKA+EEKD + A LK+ IE++  AESS T 
Sbjct: 77  PQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEEKDFEIALLKNHIESRDAAESSHTH 136

Query: 124 VIKNHDKGKTTVQDT 139
            IKN +KGK  +Q++
Sbjct: 137 TIKNANKGKAIMQES 151

[Close]

BLAST of Lag0041189 vs. NCBI nr
Match: KAA0035918.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK19070.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 2.5e-07
Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 0


Query: 64  PDSDVVTVMMIETITMEERMAEMQEHINTLMKAIEEKDSQTAQLKSQIENQHIAESSQTQ 123
           P  ++++VM+    T E RM E+ + +N LMK +EE+D + A LK+ IE+   AESS TQ
Sbjct: 77  PHPNIMSVMVTNMDTSENRMVELNKKVNMLMKVVEERDYEIASLKNHIESHDAAESSHTQ 136

Query: 124 VIKNHDKGKTTVQDTWLK 142
            +KN DKGKT +Q+  L+
Sbjct: 137 TVKNTDKGKTVMQEIHLR 154

[Close]

BLAST of Lag0041189 vs. NCBI nr
Match: KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 4.3e-07
Identity = 34/75 (45.33%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 64  PDSDVVTVMMIETITMEERMAEMQEHINTLMKAIEEKDSQTAQLKSQIENQHIAESSQTQ 123
           P  ++++VM+ +  T E+RMAE+++ +N LMKA+EE+D + A LK+ IE++  AESS T 
Sbjct: 77  PQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIALLKNHIESRDAAESSHTH 136

Query: 124 VIKNHDKGKTTVQDT 139
            IKN +KGK  +Q++
Sbjct: 137 TIKNANKGKAIMQES 151

[Close]

BLAST of Lag0041189 vs. NCBI nr
Match: KAA0036729.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 4.3e-07
Identity = 39/105 (37.14%), Postives = 65/105 (61.90%), Query Frame = 0


Query: 34  KASVIASEETTLQGVYTNDKFIVKYNLLFEPDSDVVTVMMIETITMEERMAEMQEHINTL 93
           K  ++  E  T+     N  F  ++++   P  ++++VM+ +  T E RMAE+++ +N L
Sbjct: 51  KGGIVIKENPTID--EHNSSF--EHSIEEMPHLNIMSVMVTDVDTSENRMAELEKKVNML 110

Query: 94  MKAIEEKDSQTAQLKSQIENQHIAESSQTQVIKNHDKGKTTVQDT 139
           MKA+EE+D + A LK+ IE+   AESS T  IKN +KGK  +Q++
Sbjct: 111 MKAVEERDYEIASLKNHIESHDAAESSHTHTIKNANKGKAIIQES 151

The following BLAST results are available for this feature:

BLAST of Lag0041189 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK07338.1	5.1e-08	48.00	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0050518.1	1.9e-07	46.67	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0035918.1	2.5e-07	44.87	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK19070.1 ty3-gyp...	[more]
KAA0047477.1	4.3e-07	45.33	uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]	[more]
KAA0036729.1	4.3e-07	37.14	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0041189 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 83..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0041189.1	Lag0041189.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid
molecular_function	GO:0003676	nucleic acid binding