Lag0041179 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0041179
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUDP-xylosyltransferase 2
Locationchr13: 13364922 .. 13365591 (-)
RNA-Seq ExpressionLag0041179
SyntenyLag0041179
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAGCAAAAGCTTCATAATCAATGGAAGGTTAGCCCAGAAGCCAGCCATATTGTAAAAAATCTCAATCTTGTTCTTAATCAATTTCAGAAGGTAACGTCACCAACAGGATTCTCACGAGGTTTCGACGAGGATTCAGTAACCAAGAGAACTCGAGGCTTATTAGGCCCAATGAAATTAGGGAAATCAAGATTGTTCTTCAATCATTCAGCTCTCTGACCCAATCGGAGATTTTAGGGACGAGACTATAAGGTTTACTCGGATCAGGCTTTTCATCCTCACCTTCATCCACCAAAATCTTCGAAATGATGAATGTGGTGTAATTGTTGGACTGGTCGGCTGGCTTGGCAGTGGTCTCTGGCTGGGCCTCTTCAAGAACACGGTGGGGCTCAACGCGGCAGTCGCGAAAGGAGAAATGGTTGCGTATCTCTTAGAAGTCTTGCTCGGGAGTGTCAAACTTGTCGACGTCGACAGTACTGCGAAGGACGACGACAGTAAGGAAGAGGCAAAGGACCGTGACAACGTTGTGGCAGAAGGCCCTCTGGATCTAGTGGAGGTGGGTGGGTCTGAGAATGAGCTCAATCATCTTCTCAGTCTCCGACGAGGGGATTTGGGAGTTGAGAAAAGAAGGAATCAAAATCAATGGAGAATGGGAATGGAGATTTGA

mRNA sequence

ATGGAAGAGCAAAAGCTTCATAATCAATGGAAGGTTAGCCCAGAAGCCAGCCATATTGTAAAAAATCTCAATCTTGTTCTTAATCAATTTCAGAAGCTCTCTGACCCAATCGGAGATTTTAGGGACGAGACTATAAGGTTTACTCGGATCAGGCTTTTCATCCTCACCTTCATCCACCAAAATCTTCGAAATGATGAATGTGGTGTAATTGTTGGACTGGTCGGCTGGCTTGGCAGTGGTCTCTGGCTGGGCCTCTTCAAGAACACGGTGGGGCTCAACGCGGCAGTCGCGAAAGGAGAAATGGTTGCGTATCTCTTAGAAGTCTTGCTCGGGAGTGTCAAACTTGTCGACGTCGACAGTACTGCGAAGGACGACGACAGTAAGGAAGAGGCAAAGGACCGTGACAACGTTGTGGCAGAAGGCCCTCTGGATCTAGTGGAGGTGGGTGGGTCTGAGAATGAGCTCAATCATCTTCTCAGTCTCCGACGAGGGGATTTGGGAGTTGAGAAAAGAAGGAATCAAAATCAATGGAGAATGGGAATGGAGATTTGA

Coding sequence (CDS)

ATGGAAGAGCAAAAGCTTCATAATCAATGGAAGGTTAGCCCAGAAGCCAGCCATATTGTAAAAAATCTCAATCTTGTTCTTAATCAATTTCAGAAGCTCTCTGACCCAATCGGAGATTTTAGGGACGAGACTATAAGGTTTACTCGGATCAGGCTTTTCATCCTCACCTTCATCCACCAAAATCTTCGAAATGATGAATGTGGTGTAATTGTTGGACTGGTCGGCTGGCTTGGCAGTGGTCTCTGGCTGGGCCTCTTCAAGAACACGGTGGGGCTCAACGCGGCAGTCGCGAAAGGAGAAATGGTTGCGTATCTCTTAGAAGTCTTGCTCGGGAGTGTCAAACTTGTCGACGTCGACAGTACTGCGAAGGACGACGACAGTAAGGAAGAGGCAAAGGACCGTGACAACGTTGTGGCAGAAGGCCCTCTGGATCTAGTGGAGGTGGGTGGGTCTGAGAATGAGCTCAATCATCTTCTCAGTCTCCGACGAGGGGATTTGGGAGTTGAGAAAAGAAGGAATCAAAATCAATGGAGAATGGGAATGGAGATTTGA

Protein sequence

MEEQKLHNQWKVSPEASHIVKNLNLVLNQFQKLSDPIGDFRDETIRFTRIRLFILTFIHQNLRNDECGVIVGLVGWLGSGLWLGLFKNTVGLNAAVAKGEMVAYLLEVLLGSVKLVDVDSTAKDDDSKEEAKDRDNVVAEGPLDLVEVGGSENELNHLLSLRRGDLGVEKRRNQNQWRMGMEI
Homology
[Close]
BLAST of Lag0041179 vs. NCBI nr
Match: GFZ08986.1 (UDP-xylosyltransferase 2 [Actinidia rufa])

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-04
Identity = 52/148 (35.14%), Postives = 70/148 (47.30%), Query Frame = 0 

Query: 27  LNQFQKLSDPIGDFRDETIRFTRIRLFILTFIHQNLRNDE--CGVIVGLVGWLGSGLWLG 86
           L  F  L  PI  F  E I    I LF+LTF+ Q+L + +    V + +VG  GSG  LG
Sbjct: 10  LEPFGSLLVPIRYFGSEAIGLVWIGLFVLTFVDQDLVDVKLFVAVRISVVGG-GSGGSLG 69

Query: 87  LFKNTVGLNAAVAKGEMVAYLLEVLLGSVKLVDVDSTAKDDDSKEEAKDRDNVVAEGPLD 146
            F++  GL +A    E+VA L EVLL   +    +    +D  +E+A+D D  V E    
Sbjct: 70  FFEDAAGLGSAAGGVEVVADLDEVLLWGPESAGAEVATYNDHREEQAEDSDLPVPEKSPQ 129

Query: 147 LVEVGGSENELNHLLSLRRGDLGVEKRR 173
                 SE  + H L    GDL  E  R
Sbjct: 130 SPSPLRSEAPVQHFLVGEFGDLRSESSR 156

The following BLAST results are available for this feature:
BLAST of Lag0041179 vs. NCBI nr
Match NameE-valueIdentityDescription
GFZ08986.11.2e-0435.14UDP-xylosyltransferase 2 [Actinidia rufa][more]
BLAST of Lag0041179 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0041179.1Lag0041179.1mRNA