Lag0041152 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0041152
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRibonuclease H
Locationchr13: 12916092 .. 12917800 (-)
RNA-Seq ExpressionLag0041152
SyntenyLag0041152
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAAACTACCGAGTCCGAGGCCAGAGCTGCTGAAGCTAAAGCCAGAGCAGCCGAGGCCGAGGCCAAGAAAAACAATCTCCATTGGAAGACTGAGCTTCTAAACACACTAAAGGAGCTTGGAAATCCTCAGGGAGACCTGCAGAAGTTGAAGGACTCAGGAGAGCAAGACATGAAGGAACTAATCGACCAAGTCGACCCACCCTTCACAGAAGAATTCAAGAAAGCTGAGGTGCCCTAGAAGTTCAAGGTACCTACATTCAAGCTGTATGATGGCAAGAAAGACCTCGTGCAGCATCTAAACGCCTACAAAAATTGGATGGACTTCCACGGTGTCTCAGACGCAATTAGGTGTCGCGCATTCTTTTCACTCTAACATGATCAGCCAAGCATTGGTTTGAAAAGTTAAAAAGGAGATCTATCAGCTGTTTCAAGGATTTAGCCCGAGCATTCCTTGCACAGTTCATGGGAGCTAGAGAACAGCGCAAGCCTCACATCAACCTCTTGACAGTCAAACAACAGCCAGGTGAGAGCTTGTGTGATTACATAACGCGTTTTAATGACGAAACACTGCAGGTTGAGGGGTACAGCGAGGGAGCAGCCCTAGTAGCCATAACAACCGGACTGGAAGGCGAAAGACTGCTCAATTCAATAGGTAAGAGCCAACCTCGAACCTATGCAGAGTTTGTCTCCCGGACACAGAAATACATGAGCGCAGATGAGTTACTGAAATCAAAGAGGTTAGAACGGGAGCACAAAAGACATTCTTCAGTCGATAAGGACAGGAAAAAAGATAAGAGACAGCGGACAGACGATGGTGGCCGAGACCAAGCCGACCATGACCATGGCCGAGGCCGAGCACATCCCTTCGGTAAGTTCAAGAAATACACACCAACTGTCGTTCCACAGGAACAAGTTTTGATGGAGATTCGAAACACAGGTCTTCTAAAGTTTCCTGGGAGGATGAAGTCGAATCCCGATAGAAGAGACAAGAGCCAGTATTGCCTTTTCCATTGAGACCATGGACATTCAACCAGAAATTGTATTCAGTTGAAGGATGAAATCGAAGCACTGATCCAGAATGGGTATCTGAAGGAGTTCGTCGGGGAGCCCAGGGCCGAGGGCGATCAGGGATGGCGAGGTCGAGGCCGACCAAAGATGGTCGAGACAAAGAAGAACCCCTACGAGAGATCATAACCATATTTGGAGGACCAGCTGGAGGAGGTTCAAGTAGGAAGAGGAAAGCTATTGCCAGGGAAGTAAGGTCTGAATCAGAATATCGAGGTATGTACTTTGTCCATCTATCAAAGGCACACCCCCTTTGGAGTTCACTGAGGCTGAGGCAGCGAGCATTCATCAGCCACATAATGATGCCCTAGTGGTCACTCTAATTGTAGCCAATGTGAAAATCCATCGAATCCTAATTGATGGAGGAAACTCGACTGATGTCCTTTCTCTAACAGCCTTTAAAGCAATGCAGTTAGAGAAGGAACTCTTAAAGTCAAGCCTTACCCCACTTGTAGGATTTGGAGGAGGAGAGTGACCCCAGAAGGTAGCATAGAACTTCCTGTGACCTTTGGGGATGGACATAATGCAGTGACAAAGATGATAAACTTCCTAGTTGTGGATTGTATGTCAGCCTACAATGCAATCCTAGGAAGGCCAACCTTGCATGAAATGAAGGCCATAGCTTCAACTTACCATTAG

mRNA sequence

ATGGCCAAAACTACCGAGTCCGAGGCCAGAGCTGCTGAAGCTAAAGCCAGAGCAGCCGAGGCCGAGGCCAAGAAAAACAATCTCCATTGGAAGACTGAGCTTCTAAACACACTAAAGGAGCTTGGAAATCCTCAGGGAGACCTGCAGAAGTTGAAGGACTCAGGAGAGCAAGACATGAAGGAACTAATCGACCAAGTCGACCCACCCTTCACAGAAGAATTCAAGAAAGCTGAGTTCATGGGAGCTAGAGAACAGCGCAAGCCTCACATCAACCTCTTGACAGTCAAACAACAGCCAGGTGAGAGCTTGTGTGATTACATAACGCGTTTTAATGACGAAACACTGCAGGTTGAGGGGTACAGCGAGGGAGCAGCCCTAGTAGCCATAACAACCGGACTGGAAGGCGAAAGACTGCTCAATTCAATAGGTAAGAGCCAACCTCGAACCTATGCAGAGTTTGTCTCCCGGACACAGAAATACATGAGCGCAGATGAGTTACTGAAATCAAAGAGGTTAGAACGGGAGCACAAAAGACATTCTTCAGTCGATAAGGACAGGAAAAAAGATAAGAGACAGCGGACAGACGATGGTGGCCGAGACCAAGCCGACCATGACCATGGCCGAGGCCGAGCACATCCCTTCGGTAAGTTCAAGAAATACACACCAACTGTCGTTCCACAGGAACAAGTTTTGATGGAGATTCGAAACACAGGTCTTCTAAAGTTTCCTGGGAGGATGAAGTCGAATCCCGATAGAAGAGACAAGAGCCACACTGATCCAGAATGGGTATCTGAAGGAGTTCGTCGGGGAGCCCAGGGCCGAGGGCGATCAGGGATGGCGAGGTCGAGGCCGACCAAAGATGGTCGAGACAAAGAAGAACCCCTACGAGAGATCATAACCATATTTGGAGGACCAGCTGGAGGAGGTTCAAGTAGGAAGAGGAAAGCTATTGCCAGGGAAGTAAGGTCTGAATCAGAATATCGAGTTAGAGAAGGAACTCTTAAAGTCAAGCCTTACCCCACTTGTAGGATTTGGAGGAGGAGAGTGACCCCAGAAGGTAGCATAGAACTTCCTGTGACCTTTGGGGATGGACATAATGCAGTGACAAAGATGATAAACTTCCTAGTTGTGGATTGTATGTCAGCCTACAATGCAATCCTAGGAAGGCCAACCTTGCATGAAATGAAGGCCATAGCTTCAACTTACCATTAG

Coding sequence (CDS)

ATGGCCAAAACTACCGAGTCCGAGGCCAGAGCTGCTGAAGCTAAAGCCAGAGCAGCCGAGGCCGAGGCCAAGAAAAACAATCTCCATTGGAAGACTGAGCTTCTAAACACACTAAAGGAGCTTGGAAATCCTCAGGGAGACCTGCAGAAGTTGAAGGACTCAGGAGAGCAAGACATGAAGGAACTAATCGACCAAGTCGACCCACCCTTCACAGAAGAATTCAAGAAAGCTGAGTTCATGGGAGCTAGAGAACAGCGCAAGCCTCACATCAACCTCTTGACAGTCAAACAACAGCCAGGTGAGAGCTTGTGTGATTACATAACGCGTTTTAATGACGAAACACTGCAGGTTGAGGGGTACAGCGAGGGAGCAGCCCTAGTAGCCATAACAACCGGACTGGAAGGCGAAAGACTGCTCAATTCAATAGGTAAGAGCCAACCTCGAACCTATGCAGAGTTTGTCTCCCGGACACAGAAATACATGAGCGCAGATGAGTTACTGAAATCAAAGAGGTTAGAACGGGAGCACAAAAGACATTCTTCAGTCGATAAGGACAGGAAAAAAGATAAGAGACAGCGGACAGACGATGGTGGCCGAGACCAAGCCGACCATGACCATGGCCGAGGCCGAGCACATCCCTTCGGTAAGTTCAAGAAATACACACCAACTGTCGTTCCACAGGAACAAGTTTTGATGGAGATTCGAAACACAGGTCTTCTAAAGTTTCCTGGGAGGATGAAGTCGAATCCCGATAGAAGAGACAAGAGCCACACTGATCCAGAATGGGTATCTGAAGGAGTTCGTCGGGGAGCCCAGGGCCGAGGGCGATCAGGGATGGCGAGGTCGAGGCCGACCAAAGATGGTCGAGACAAAGAAGAACCCCTACGAGAGATCATAACCATATTTGGAGGACCAGCTGGAGGAGGTTCAAGTAGGAAGAGGAAAGCTATTGCCAGGGAAGTAAGGTCTGAATCAGAATATCGAGTTAGAGAAGGAACTCTTAAAGTCAAGCCTTACCCCACTTGTAGGATTTGGAGGAGGAGAGTGACCCCAGAAGGTAGCATAGAACTTCCTGTGACCTTTGGGGATGGACATAATGCAGTGACAAAGATGATAAACTTCCTAGTTGTGGATTGTATGTCAGCCTACAATGCAATCCTAGGAAGGCCAACCTTGCATGAAATGAAGGCCATAGCTTCAACTTACCATTAG

Protein sequence

MAKTTESEARAAEAKARAAEAEAKKNNLHWKTELLNTLKELGNPQGDLQKLKDSGEQDMKELIDQVDPPFTEEFKKAEFMGAREQRKPHINLLTVKQQPGESLCDYITRFNDETLQVEGYSEGAALVAITTGLEGERLLNSIGKSQPRTYAEFVSRTQKYMSADELLKSKRLEREHKRHSSVDKDRKKDKRQRTDDGGRDQADHDHGRGRAHPFGKFKKYTPTVVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKSHTDPEWVSEGVRRGAQGRGRSGMARSRPTKDGRDKEEPLREIITIFGGPAGGGSSRKRKAIAREVRSESEYRVREGTLKVKPYPTCRIWRRRVTPEGSIELPVTFGDGHNAVTKMINFLVVDCMSAYNAILGRPTLHEMKAIASTYH
Homology
BLAST of Lag0041152 vs. NCBI nr
Match: GFS31826.1 (hypothetical protein Acr_00g0019390 [Actinidia rufa])

HSP 1 Score: 171.0 bits (432), Expect = 2.1e-38
Identity = 129/362 (35.64%), Postives = 185/362 (51.10%), Query Frame = 0

Query: 79  FMGAREQRKPHINLLTVKQQPGESLCDYITRFNDETLQVEGYSEGAALVAITTGLEGERL 138
           ++G + Q+KP  +L  VKQ+  E+L +++T FN ETL V+   +  A+ A   G+   + 
Sbjct: 306 YIGGQRQKKPSTSLFNVKQREKETLREFVTLFNQETLYVDDLDQKVAVAAFIAGVGTPKF 365

Query: 139 LNSIGKSQPRTYAEFVSRTQKYMSADELLKSKRLEREHKRHSSVDKDRKKDKRQRTDDGG 198
           L S+ K  P+T A  + R QKYM+A++ LK+    RE    +    DRK+   +R DD  
Sbjct: 366 LFSLAKEAPKTMAALMLRAQKYMNAEDTLKA----REDLEGTISIPDRKRSIVERKDDKV 425

Query: 199 RDQADHDHGR-----GRAHPFGKFKKYTPTVVPQEQVLMEIRNTGLLKFPGRMKSNPDRR 258
                    +      R  P    + +TP     +QVL EI+    LK+PGRM+S P++R
Sbjct: 426 TKVPKLTEQKLTIEGNRTKPARYNQYFTPLNTSLDQVLYEIKEDPALKWPGRMRSPPEKR 485

Query: 259 DKS-----HTD-----------PEWVSEGVRRGAQGR----GRSGMARS--------RPT 318
            K+     H D            + V   +++G  GR    GR    R         R  
Sbjct: 486 PKNKWCRFHQDHGHETEDCYDLKQQVENLIKQGRLGRFIAWGRPDKKRDHSPQRVERRSL 545

Query: 319 KDGRDKEEPLREIITIFGGPAGGG-SSRKRKAIAREVRSESE-YRVREGTLKVKPYPTCR 378
           +  +  ++P+ EI  I GG AGGG SS  RK  ARE+R++ E   + +   + +P  +  
Sbjct: 546 EKEKGNQQPIGEIKVISGGFAGGGESSCSRKKHAREIRNQKEVMSIGQSAKRPRPVHSLL 605

Query: 379 I--WRRRVTPEGSIELPVTFGDGHNAVTKMINFLVVDCMSAYNAILGRPTLHEMKAIAST 404
           +     RVTP GSI LPVT GD     TKM+ FLVVDC SAYN I+GR  L+E KAI ST
Sbjct: 606 VGFTGDRVTPLGSIALPVTLGDAPRQTTKMVTFLVVDCPSAYNIIVGRTALNEFKAIPST 663

BLAST of Lag0041152 vs. NCBI nr
Match: XP_024041095.1 (uncharacterized protein LOC112098853 [Citrus clementina])

HSP 1 Score: 161.0 bits (406), Expect = 2.1e-35
Identity = 136/430 (31.63%), Postives = 193/430 (44.88%), Query Frame = 0

Query: 77  AEFMGAREQRKPHINLLTVKQQPGESLCDYITRFNDETLQVEGYSEGAALVAITTGLEGE 136
           + F  AR++ KP   LLTVKQQ GE+L DYI R+N+E  QV+GY +G AL  I  GL   
Sbjct: 261 SHFRSARQRGKPVTYLLTVKQQEGETLRDYIRRYNNEITQVDGYDDGIALSGIMEGLRMG 320

Query: 137 RLLNSIGKSQPRTYAEFVSRTQKYMSADELLKSKRLEREHKRHSSVDKDRKKDKR-QRTD 196
           +L  S+ K  P +Y+E ++R +KY +A+E  K++  E+         KD ++++R  R D
Sbjct: 321 KLWWSVSKRPPTSYSEMLARAEKYANAEERFKNRNQEKGESTKGKKKKDDQRERRVVRPD 380

Query: 197 DGGRDQADHDHGRG-----RAHPFGKFKKYTPTVVPQEQVLMEIRNTGLLKFPGRMKSNP 256
              R        R      R     +F  +T    P+EQ+LM++RN  L + P  MK+NP
Sbjct: 381 QSLRRNQFRPGERSEVRDTRPRLASQFTNFTELNTPREQILMQVRNPTLFRTPPPMKTNP 440

Query: 257 DRRDKS-----HTD-----------PEWVSEGVRRG--------AQGRGRSGMARSRPTK 316
            RR+ +     H D            E +   VR+G         + R +S    S   +
Sbjct: 441 SRRNPNKYCHFHKDHGHDTSECFELKEQIESLVRQGQLQEYVRNPEDRVKSEQPESSKKR 500

Query: 317 DGRDKE---EPLREIITIFGGPAGGGSSRKRKAIAREVR--------------------- 376
            G+ KE   E + ++  I+GGPA G S + RK +AR+ R                     
Sbjct: 501 KGKKKEDSDESMSDVNHIWGGPAAGDSRKSRKNLARQARHEPNGPEVNLTNQSQGSMVRG 560

Query: 377 -----SESEYR----------------------------------------VREG--TLK 404
                SE + R                                         R G    +
Sbjct: 561 IPIIFSEDDARGVHHPHCDALVVTLPVANKRLHRILIDNGSSADILFLSTFARMGLERSQ 620

BLAST of Lag0041152 vs. NCBI nr
Match: XP_024047974.1 (uncharacterized protein LOC112101548 [Citrus clementina] >XP_024953918.1 uncharacterized protein LOC112498174 [Citrus sinensis])

HSP 1 Score: 155.6 bits (392), Expect = 9.0e-34
Identity = 138/434 (31.80%), Postives = 188/434 (43.32%), Query Frame = 0

Query: 79  FMGAREQRKPHINLLTVKQQPGESLCDYITRFNDETLQVEGYSEGAALVAITTGLEGERL 138
           F  AR++ KP   LLTVKQ  GESL +YI R+N ET QV+GY +G AL  +  GL+  RL
Sbjct: 105 FHSARQRGKPVTYLLTVKQHEGESLREYIQRYNAETTQVDGYDDGVALSGLMEGLQMGRL 164

Query: 139 LNSIGKSQPRTYAEFVSRTQKYMSADELLKSKRLEREHKRHSSVDKDRKKDKRQ----RT 198
             S+ K+ P TY+E +SR +KY +A+E  +SK+     K  SS +K  K+D+R     R 
Sbjct: 165 WWSVAKNPPSTYSEMLSRAEKYANAEERFQSKK--GREKGESSKNKKTKEDRRDIRPGRP 224

Query: 199 DDGGR-------DQADHDHGRGRAHPFGKFKKYTPTVVPQEQVLMEIRNTGLLKFPGRMK 258
           D   R       DQ      R R  P  +F  YT    P+E +LM+++N+ L K P  +K
Sbjct: 225 DQASRKDQFRPWDQLSSQEPRSR--PPVQFTNYTELNAPREHILMQMKNSTLFKAPPPLK 284

Query: 259 SNPDRR----------DKSHTDPEWVS--------------EGVRRGAQGRGRSGMARSR 318
           S+  RR          D  H   E                 +G  RG   R    +  S 
Sbjct: 285 SDRSRRNQKKYCHFYKDVGHDTSECFDLKEQIESLVRQSQLQGYVRGQGSRENRDLPESS 344

Query: 319 PTKDGRDKE----EPLREIITIFGGPAGGGSSRKRKAIAREVRSESE-------YRVREG 378
               G+ KE    E +  +  I+GGP  G S + RK +AR+ R E          R++  
Sbjct: 345 RKDKGKKKENYSDENMSVVNHIWGGPFAGNSGKARKNLARQARHEPNGLDINLTDRLQNS 404

Query: 379 TLKVKP------------YPTC------------RIWR---------------------- 404
             +  P            +P C            R+ R                      
Sbjct: 405 RFRDTPIIFSEEDTRGIHHPHCDAIVVTLPVANKRLHRILIDNGSSADILFLSAFTKMGL 464

BLAST of Lag0041152 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 154.1 bits (388), Expect = 2.6e-33
Identity = 124/364 (34.07%), Postives = 169/364 (46.43%), Query Frame = 0

Query: 78  EFMGAREQRKPHINLLTVKQQPGESLCDYITRFNDETLQVEGYSEGAALVAITTGLEGER 137
           +F+G R + +P   LLT+KQ+  ESL DY+ RFN+E LQVEG ++  +L+A  +G+  E 
Sbjct: 265 QFVGGRCRSRPVAYLLTIKQRTTESLRDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEH 324

Query: 138 LLNSIGKSQPRTYAEFVSRTQKYMSADELLKSKRLEREHKRHSSVDKDRKKDKRQRTDDG 197
           L  S GK  P T++E +SR Q+YMSA E   SKR E + KR +   ++R  DK Q +   
Sbjct: 325 LSFSFGKRTPNTFSEALSRAQRYMSAGEFFYSKR-EPDGKR-TDPKRERSGDKPQGSRWE 384

Query: 198 GRDQADHDHGRGRAHPFGKFKKYTPTVVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKS- 257
            RD++       +  P  KF+KYTPT VP EQVLMEI++  LLK+P RMK++  +R K  
Sbjct: 385 KRDRS------SQKDPPRKFEKYTPTTVPIEQVLMEIKDQRLLKWPERMKASSAKRSKGR 444

Query: 258 ----HTDPEWVSE---GVRRGAQGRGRSGMARS-----RPTKDGRDKEEPLREIITIFGG 317
               H D    ++    ++   +G  R G  +      + T++G   + P REI TI GG
Sbjct: 445 YCLFHRDHGHATQDCFDLKEEVEGLIRRGYLKEYVEEPKATQNGESDKSPAREIRTIMGG 504

Query: 318 PAGGGSSRKRKAIAREVRSESEYR------------------------------------ 363
           P    S RKRKA  RE R+  E                                      
Sbjct: 505 PIERESGRKRKADVREARTSREQNEVYHAYTTNRPVTIEFSEDEATHLLHPHNDALVIXL 564

BLAST of Lag0041152 vs. NCBI nr
Match: XP_022159368.1 (uncharacterized protein LOC111025785 [Momordica charantia])

HSP 1 Score: 146.4 bits (368), Expect = 5.5e-31
Identity = 104/262 (39.69%), Postives = 147/262 (56.11%), Query Frame = 0

Query: 78  EFMGAREQRKPHINLLTVKQQPGESLCDYITRFNDETLQVEGYSEGAALVAITTGLEGER 137
           +F+G R + +P   LLT+KQ+  ESL DY+ RFN E LQ+E  ++  +L+A  +G+  E 
Sbjct: 49  QFVGGRCRSRPVAYLLTIKQRTTESLHDYVARFNKEKLQIESLTDVVSLLAFMSGVRDEH 108

Query: 138 LLNSIGKSQPRTYAEFVSRTQKYMSADELLKSKRLEREHKRHSSVDKDRKKDKRQRTDDG 197
           L  S GK  P T++E +SR Q+YMSA E   SKR E + KR +   ++R  DK Q +   
Sbjct: 109 LSFSFGKKTPSTFSETLSRAQRYMSAGEFFYSKR-EPDGKR-TDQKRERSGDKPQGSRWE 168

Query: 198 GRDQADHDHGRGRAHPFGKFKKYTPTVVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKS- 257
            RD++       +  P  KF+KYTPT VP EQVLMEI++  LLK+P RMK    +R K  
Sbjct: 169 KRDRS------SQKDPPRKFEKYTPTTVPLEQVLMEIKDQRLLKWPERMKVPSTKRSKGR 228

Query: 258 ----HTDPEWVSE---GVRRGAQGRGRSG-----MARSRPTKDGRDKEEPLREIITIFGG 317
               H D    ++    ++   +G  R G     +   + T++G  ++ P REI TI GG
Sbjct: 229 YCLFHRDHNHATQDYFDLKEEVEGLIRRGYLQEYVEEPKATQNGESEKSPAREIRTIMGG 288

Query: 318 PAGGGSSRKRKAIAREVRSESE 327
           P    S+RKRKA  RE R   E
Sbjct: 289 PIERESARKRKADVREARPSRE 302

BLAST of Lag0041152 vs. ExPASy TrEMBL
Match: A0A7J0DBQ5 (Retrotrans_gag domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_00g0019390 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.0e-38
Identity = 129/362 (35.64%), Postives = 185/362 (51.10%), Query Frame = 0

Query: 79  FMGAREQRKPHINLLTVKQQPGESLCDYITRFNDETLQVEGYSEGAALVAITTGLEGERL 138
           ++G + Q+KP  +L  VKQ+  E+L +++T FN ETL V+   +  A+ A   G+   + 
Sbjct: 306 YIGGQRQKKPSTSLFNVKQREKETLREFVTLFNQETLYVDDLDQKVAVAAFIAGVGTPKF 365

Query: 139 LNSIGKSQPRTYAEFVSRTQKYMSADELLKSKRLEREHKRHSSVDKDRKKDKRQRTDDGG 198
           L S+ K  P+T A  + R QKYM+A++ LK+    RE    +    DRK+   +R DD  
Sbjct: 366 LFSLAKEAPKTMAALMLRAQKYMNAEDTLKA----REDLEGTISIPDRKRSIVERKDDKV 425

Query: 199 RDQADHDHGR-----GRAHPFGKFKKYTPTVVPQEQVLMEIRNTGLLKFPGRMKSNPDRR 258
                    +      R  P    + +TP     +QVL EI+    LK+PGRM+S P++R
Sbjct: 426 TKVPKLTEQKLTIEGNRTKPARYNQYFTPLNTSLDQVLYEIKEDPALKWPGRMRSPPEKR 485

Query: 259 DKS-----HTD-----------PEWVSEGVRRGAQGR----GRSGMARS--------RPT 318
            K+     H D            + V   +++G  GR    GR    R         R  
Sbjct: 486 PKNKWCRFHQDHGHETEDCYDLKQQVENLIKQGRLGRFIAWGRPDKKRDHSPQRVERRSL 545

Query: 319 KDGRDKEEPLREIITIFGGPAGGG-SSRKRKAIAREVRSESE-YRVREGTLKVKPYPTCR 378
           +  +  ++P+ EI  I GG AGGG SS  RK  ARE+R++ E   + +   + +P  +  
Sbjct: 546 EKEKGNQQPIGEIKVISGGFAGGGESSCSRKKHAREIRNQKEVMSIGQSAKRPRPVHSLL 605

Query: 379 I--WRRRVTPEGSIELPVTFGDGHNAVTKMINFLVVDCMSAYNAILGRPTLHEMKAIAST 404
           +     RVTP GSI LPVT GD     TKM+ FLVVDC SAYN I+GR  L+E KAI ST
Sbjct: 606 VGFTGDRVTPLGSIALPVTLGDAPRQTTKMVTFLVVDCPSAYNIIVGRTALNEFKAIPST 663

BLAST of Lag0041152 vs. ExPASy TrEMBL
Match: A0A2N9HTQ0 (Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42975 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.5e-34
Identity = 119/382 (31.15%), Postives = 176/382 (46.07%), Query Frame = 0

Query: 79  FMGAREQRKPHINLLTVKQQPGESLCDYITRFNDETLQVEGYSEGAALVAITTGLEGERL 138
           F+GA+   +P  +LL +KQ+ GE+L  Y+TRFN ETL V+G  +   L A  +GL+    
Sbjct: 409 FIGAQRYGRPTTHLLNIKQKEGETLRSYLTRFNKETLLVDGADDKVVLTAFISGLQAGDF 468

Query: 139 LNSIGKSQPRTYAEFVSRTQKYMSADELLKSKRLEREHKRHSSVDKDRKKDKRQRTDDGG 198
           L S+ K  P T  E +   Q++M+ +E L +        R  +V K RK +   R  +  
Sbjct: 469 LFSVYKDPPSTMTEMMYEAQRHMNGEEALLA--------RDQTVGKKRKWEHPDRPAEPH 528

Query: 199 RDQADHDHGRGRAHP-------FGKFKKYTPTVVPQEQVLMEIRNTGLLKFPGRMKSNPD 258
             +      R R H          +F  +TP   P + + M+IRN   LK+PG++ ++PD
Sbjct: 529 DTRPKAQRNRNRRHEDRNGRGFNERFNHFTPLNAPVDHIFMQIRNDPALKWPGKLLTDPD 588

Query: 259 RRDKS-----HTD---------------PEWVSEG-----VRRGAQGRGRSGMARSRPTK 318
           +R +      H D                E + +G     V RG +     G  + RP  
Sbjct: 589 KRPRDKYCRFHRDHGHNTEDCYDLKRQIEELIKQGKLQRFVERGQREGRPQGPRQQRPPV 648

Query: 319 DGRDKEEPLREIITIFGGPAGGGSSR-KRKAIAREVRSE--------------------- 378
           +   +  PL EI  I GG A GG+SR  RKA AR++R+                      
Sbjct: 649 EVLPRPPPLGEIHVITGGVAAGGTSRSSRKAYARQIRNVLATPQDGSLIDNGSSADIIYL 708

Query: 379 ---SEYRVREGTLKVKPYPTCRIWRRRVTPEGSIELPVTFGDGHNAVTKMINFLVVDCMS 404
               + R+ +  L+    P        V P G I L +  G      TK ++FLVVDC S
Sbjct: 709 TAFQQMRIDKAQLRPIETPLVGFAGTSVYPLGIITLQLVAGTYPKQATKKVDFLVVDCPS 768

BLAST of Lag0041152 vs. ExPASy TrEMBL
Match: A0A2N9H694 (Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35022 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.0e-34
Identity = 124/382 (32.46%), Postives = 182/382 (47.64%), Query Frame = 0

Query: 79  FMGAREQRKPHINLLTVKQQPGESLCDYITRFNDETLQVEGYSEGAALVAITTGLEGERL 138
           F+GA+   +P  +LL +KQ+ GE+L  Y+TRFN ETL V+G  +   L A  +GL+    
Sbjct: 382 FIGAQRYGRPTTHLLNIKQKEGETLRSYLTRFNKETLLVDGADDKVVLTAFISGLQAGDF 441

Query: 139 LNSIGKSQPRTYAEFVSRTQKYMSADELLKS------KRLEREHKRHSSVDKD-RKKDKR 198
           L S+ K  P T  E +   Q++M+ +E L +      K+ + EH    +   D R K +R
Sbjct: 442 LFSVYKDPPSTMTEMMYEAQRHMNGEEALLARDQTIGKKRKWEHPDRPAEPHDTRPKAQR 501

Query: 199 QRTDDGGRDQADHDHGRGRAHPFGKFKKYTPTVVPQEQVLMEIRNTGLLKFPGRMKSNPD 258
            R     R Q D  +GRG      +F  +TP   P + + M+IRN   LK+PG++ ++PD
Sbjct: 502 NR----NRRQEDR-NGRGFNE---RFNHFTPLNAPVDHIFMQIRNDPALKWPGKLLTDPD 561

Query: 259 RRDKS-----HTD---------------PEWVSEG-----VRRGAQGRGRSGMARSRPTK 318
           +R +      H D                E + +G     V RG +     G  + RP  
Sbjct: 562 KRPRDKYCRFHRDHGHNTEDCYDLKRQIEELIKQGKLQRFVERGQREGRPQGPRQQRPPV 621

Query: 319 DGRDKEEPLREIITIFGGPAGGGSSR-KRKAIAREVRSE--------------------- 378
           +   +  PL EI  I GG A GG+SR  RKA AR++R+                      
Sbjct: 622 EVLPRPPPLGEIHVITGGVAAGGTSRSSRKAYARQIRNVLATPQDGSLIDNGSSADIIYL 681

Query: 379 ---SEYRVREGTLKVKPYPTCRIWRRRVTPEGSIELPVTFGDGHNAVTKMINFLVVDCMS 404
               + R+ +  L+    P        V P G I L +  G      TK ++FLVVDC S
Sbjct: 682 TAFQQMRIDKAQLRPIETPLVGFAGTSVYPLGIITLQLVAGTYPKQATKKVDFLVVDCPS 741

BLAST of Lag0041152 vs. ExPASy TrEMBL
Match: A0A2N9J1E3 (Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58131 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.0e-34
Identity = 124/382 (32.46%), Postives = 182/382 (47.64%), Query Frame = 0

Query: 79  FMGAREQRKPHINLLTVKQQPGESLCDYITRFNDETLQVEGYSEGAALVAITTGLEGERL 138
           F+GA+   +P  +LL +KQ+ GE+L  Y+TRFN ETL V+G  +   L A  +GL+    
Sbjct: 369 FIGAQRYGRPTTHLLNIKQKEGETLRSYLTRFNKETLLVDGADDKVVLTAFISGLQAGDF 428

Query: 139 LNSIGKSQPRTYAEFVSRTQKYMSADELLKS------KRLEREHKRHSSVDKD-RKKDKR 198
           L S+ K  P T  E +   Q++M+ +E L +      K+ + EH    +   D R K +R
Sbjct: 429 LFSVYKDPPSTMTEMMYEAQRHMNGEEALLARDQTIGKKRKWEHPDRPAEPHDTRPKAQR 488

Query: 199 QRTDDGGRDQADHDHGRGRAHPFGKFKKYTPTVVPQEQVLMEIRNTGLLKFPGRMKSNPD 258
            R     R Q D  +GRG      +F  +TP   P + + M+IRN   LK+PG++ ++PD
Sbjct: 489 NR----NRRQEDR-NGRGFNE---RFNHFTPLNAPVDHIFMQIRNDPALKWPGKLLTDPD 548

Query: 259 RRDKS-----HTD---------------PEWVSEG-----VRRGAQGRGRSGMARSRPTK 318
           +R +      H D                E + +G     V RG +     G  + RP  
Sbjct: 549 KRPRDKYCRFHRDHGHNTEDCYDLKRQIEELIKQGKLQRFVERGQREGRPQGPRQQRPPV 608

Query: 319 DGRDKEEPLREIITIFGGPAGGGSSR-KRKAIAREVRSE--------------------- 378
           +   +  PL EI  I GG A GG+SR  RKA AR++R+                      
Sbjct: 609 EVLPRPPPLGEIHVITGGVAAGGTSRSSRKAYARQIRNVLATPQDGSLIDNGSSADIIYL 668

Query: 379 ---SEYRVREGTLKVKPYPTCRIWRRRVTPEGSIELPVTFGDGHNAVTKMINFLVVDCMS 404
               + R+ +  L+    P        V P G I L +  G      TK ++FLVVDC S
Sbjct: 669 TAFQQMRIDKAQLRPIETPLVGFAGTSVYPLGIITLQLVAGTYPKQATKKVDFLVVDCPS 728

BLAST of Lag0041152 vs. ExPASy TrEMBL
Match: A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.3e-33
Identity = 124/364 (34.07%), Postives = 169/364 (46.43%), Query Frame = 0

Query: 78  EFMGAREQRKPHINLLTVKQQPGESLCDYITRFNDETLQVEGYSEGAALVAITTGLEGER 137
           +F+G R + +P   LLT+KQ+  ESL DY+ RFN+E LQVEG ++  +L+A  +G+  E 
Sbjct: 265 QFVGGRCRSRPVAYLLTIKQRTTESLRDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEH 324

Query: 138 LLNSIGKSQPRTYAEFVSRTQKYMSADELLKSKRLEREHKRHSSVDKDRKKDKRQRTDDG 197
           L  S GK  P T++E +SR Q+YMSA E   SKR E + KR +   ++R  DK Q +   
Sbjct: 325 LSFSFGKRTPNTFSEALSRAQRYMSAGEFFYSKR-EPDGKR-TDPKRERSGDKPQGSRWE 384

Query: 198 GRDQADHDHGRGRAHPFGKFKKYTPTVVPQEQVLMEIRNTGLLKFPGRMKSNPDRRDKS- 257
            RD++       +  P  KF+KYTPT VP EQVLMEI++  LLK+P RMK++  +R K  
Sbjct: 385 KRDRS------SQKDPPRKFEKYTPTTVPIEQVLMEIKDQRLLKWPERMKASSAKRSKGR 444

Query: 258 ----HTDPEWVSE---GVRRGAQGRGRSGMARS-----RPTKDGRDKEEPLREIITIFGG 317
               H D    ++    ++   +G  R G  +      + T++G   + P REI TI GG
Sbjct: 445 YCLFHRDHGHATQDCFDLKEEVEGLIRRGYLKEYVEEPKATQNGESDKSPAREIRTIMGG 504

Query: 318 PAGGGSSRKRKAIAREVRSESEYR------------------------------------ 363
           P    S RKRKA  RE R+  E                                      
Sbjct: 505 PIERESGRKRKADVREARTSREQNEVYHAYTTNRPVTIEFSEDEATHLLHPHNDALVIXL 564

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
GFS31826.12.1e-3835.64hypothetical protein Acr_00g0019390 [Actinidia rufa][more]
XP_024041095.12.1e-3531.63uncharacterized protein LOC112098853 [Citrus clementina][more]
XP_024047974.19.0e-3431.80uncharacterized protein LOC112101548 [Citrus clementina] >XP_024953918.1 unchara... [more]
XP_022158830.12.6e-3334.07uncharacterized protein LOC111025293 [Momordica charantia][more]
XP_022159368.15.5e-3139.69uncharacterized protein LOC111025785 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A7J0DBQ51.0e-3835.64Retrotrans_gag domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_00g0... [more]
A0A2N9HTQ01.5e-3431.15Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS42975 PE=4 SV=1[more]
A0A2N9H6942.0e-3432.46Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35022 PE=4 SV=1[more]
A0A2N9J1E32.0e-3432.46Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58131 PE=4 SV=1[more]
A0A6J1DWY01.3e-3334.07uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 2..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 241..294
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 280..294
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 246..264
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 167..221
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 167..210

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0041152.1Lag0041152.1mRNA