Lag0041127 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0041127
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionSerine/threonine-protein kinase TIO-like
Locationchr13: 12503074 .. 12505427 (+)
RNA-Seq ExpressionLag0041127
SyntenyLag0041127
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTAACAAACAAAACTTCGGGGAACTTAATACGTTGTTTAAGTGGAAGCAAACCAAAGCAATGGGACCTTGCCCTTACCCAAGGTGAATTCGCCTTCAATTATATGCTTAATCATTCTACAAGTGTCCATTTGAAATTATATACACTCAACTCCCTAGACTTACAGTGGACTTAGCTAAAATTCCATCATCTGTTGATTTTAATCAGGAACCTGCTTACGTGGCTCCGTGAGTGATCAAATACATCAAGAAGTCATAGACCATTTACAACAATCTACCTTAACTTACACTGCAGCAGACACATCAAAGGAGCAAAAGACAAGGTGATCTACATTTGAGGAAGTAACGTTTTCTTGTGGAACTTACAACAAGCTAAAGCTTCGTAAGCTTGGACCATTTAGAATACTTAAGAAATATGGGGAAAATGGCTATCGAATTGAGCTACCAGATAACCTATGGATTAATCTTGCTTTTAATGTTGTTGACATTTATGAATACCATGGTCTCTCTTTAACCATGGCCAAATGACGCTCCATTCAACATGAAGCGAGTTTGTTTTTCTTAAAGGGGGGCAAATTTGATGTAGGCCTTTACGACATTTTCTATTCTTTTACTTGGTTAATCAGCTTTTACCTTTATGTTCTATTTTGGGCTGAATTTATGGGCCTGTGGCTTTGTTATTTAAATTACAGCTGTTATTTAGTCTGTAGGTTGTTAGCTGGCTTCTTGAAAATAGCCATCGGGATCTTTGGGGCTTTAGGTTGCATAAATATCAACCATTCCGATTAAGAAAGGGTTAGATCATTTTTTAATAAAACTTCTAACCTTTGGTTTACACCAGCATGTCTCTTCAATAAATTTGAGACTTTTCTTCTGGTGTGATAAGAAAGATAGGCTTCAATAAAGGATTTTTTTCAATTCCTTAACACTTTTGGGAAGAGGAGAACCATTAATCTCCATGGATTCTCCCAAAAAGTCATTTATAGGCGCCTAGTCTTCCATCAAAATGTCATTAATAGGCTCCTTGTCTTCTCCCAAAATGCCATTAATAGGAGATAAAAAGTCTGAAGCTTTTTTCTTGTATAGATATTCAGGTAAGCTTCATAAAAATATTTTCTGATCTCTTTAACGCTCAAAGAAGGCAAAGGGCCATTACACTTTTCGTCACGAGGAGGGCACAATTTTTTCTTCCACCCATCCACTAATAATATCTCGTTCTGAAGCTTGAGCAATCAATAATTCCTCAGGTCGAGACTCATTTATGGTTATATCACCAATACCACTAGACTAATTAATTTCCTCAACTCCTTTTTCCAATAATGAGGAGCCATTAATGTTTTTTTTTTTAACAAACAAGATGTAGATTATGCACATGGAAAAAAAAAAAAAAAAAAACAGCCTATGGCAGGGGGAAGATAGAACCCCCTCCCTCAACAAGAAGTCTGAAAAAGAGTTGTCTAGTTTGATTGTGATAAAGTATTTGATATAAGATTAAATTGACCATAACCCATCAGCTTAAGCTTTTGAGTTTGGTGGTGATTTCAGGGAGCTCCACCATGAGTTCGAAGCTACGAAAAAAAGGGGAAGATAGAAATGGTACAGAAGTGCGAATTGTGAACGGATCCAAAAACAATGTTCCAAATTAGAAGCAGAAGACAAACAAGAAGAAACGAATAGGAACGATTGAAAGAACTAAAAGAAAAAATTATACGAGCTCCATTTTGACGGGATACTCAAGGGTTGCAAAAAACTTTGATACGTTCCCACCCTACCTTCAGAGGGTGGTTCACTCACTTAAAAGAGGAAAAAGCATACAAGCAAATAGGGAATGAGCAGACTACACCCGAAGACCACTCATTCCCTCATGCAGCAGATACTCCAACAGTTGCAATGGATACTCTGACAACAAAGTTGGAGAATCGGTTGCATTTTAGCCTAAAAAATAACGTAAGTAGGAATCAACAGTGGATAATGCATCCGATACTCTGAAAGTCACTATATACCAAGATAGAGTGTAGCGACTTTTGGAGAATCGGGCTTCAAAACAACGTTTACCCCCCAAACCCTCAGGGGAGCACTTTCATACGTTCAGGCCCTACCTCCGGAGAGCCCTCACTTACGAATGGATTACAAAAGGGGGTACCCTAGCGAGGGCATCGGTGCACTACACCCAAAGTACACTCATGCCCTTAATACTATTAGCCCAACCCAAAAGACAAAGCAAAACCCCTTTGAGGGGGTTTCCAAGGGTTACAAGAGAACACCGAAAAGAGAAAATTACATAAGGAAGGGGAACACAGGAAATTTTGGGACGATCACAGAACCTAGAACAAATCATACACGAAAATGA

mRNA sequence

ATGGAGGTAACAAACAAAACTTCGGGGAACTTAATACGTTGTTTAAGTGGAAGCAAACCAAAGCAATGGGACCTTGCCCTTACCCAAGGAACCTGCTTACGTGGCTCCGTGAGTGATCAAATACATCAAGAAGTCATAGACCATTTACAACAATCTACCTTAACTTACACTGCAGCAGACACATCAAAGGAGCAAAAGACAAGAGGGTGGTTCACTCACTTAAAAGAGGAAAAAGCATACAAGCAAATAGGGAATGAGCAGACTACACCCGAAGACCACTCATTCCCTCATGCAGCAGATACTCCAACAGTTGCAATGGATACTCTGACAACAAAGTTGGAGAATCGGTTGCATTTTAGCCTAAAAAATAACGCCCTACCTCCGGAGAGCCCTCACTTACGAATGGATTACAAAAGGGGGTACCCTAGCGAGGGCATCGGTGCACTACACCCAAAGTACACTCATGCCCTTAATACTATTAGCCCAACCCAAAAGACAAAGCAAAACCCCTTTGAGGGGGTTTCCAAGGGTTACAAGAGAACACCGAAAAGAGAAAATTACATAAGGAAGGGGAACACAGGAAATTTTGGGACGATCACAGAACCTAGAACAAATCATACACGAAAATGA

Coding sequence (CDS)

ATGGAGGTAACAAACAAAACTTCGGGGAACTTAATACGTTGTTTAAGTGGAAGCAAACCAAAGCAATGGGACCTTGCCCTTACCCAAGGAACCTGCTTACGTGGCTCCGTGAGTGATCAAATACATCAAGAAGTCATAGACCATTTACAACAATCTACCTTAACTTACACTGCAGCAGACACATCAAAGGAGCAAAAGACAAGAGGGTGGTTCACTCACTTAAAAGAGGAAAAAGCATACAAGCAAATAGGGAATGAGCAGACTACACCCGAAGACCACTCATTCCCTCATGCAGCAGATACTCCAACAGTTGCAATGGATACTCTGACAACAAAGTTGGAGAATCGGTTGCATTTTAGCCTAAAAAATAACGCCCTACCTCCGGAGAGCCCTCACTTACGAATGGATTACAAAAGGGGGTACCCTAGCGAGGGCATCGGTGCACTACACCCAAAGTACACTCATGCCCTTAATACTATTAGCCCAACCCAAAAGACAAAGCAAAACCCCTTTGAGGGGGTTTCCAAGGGTTACAAGAGAACACCGAAAAGAGAAAATTACATAAGGAAGGGGAACACAGGAAATTTTGGGACGATCACAGAACCTAGAACAAATCATACACGAAAATGA

Protein sequence

MEVTNKTSGNLIRCLSGSKPKQWDLALTQGTCLRGSVSDQIHQEVIDHLQQSTLTYTAADTSKEQKTRGWFTHLKEEKAYKQIGNEQTTPEDHSFPHAADTPTVAMDTLTTKLENRLHFSLKNNALPPESPHLRMDYKRGYPSEGIGALHPKYTHALNTISPTQKTKQNPFEGVSKGYKRTPKRENYIRKGNTGNFGTITEPRTNHTRK
Homology
[Close]
BLAST of Lag0041127 vs. NCBI nr
Match: KAA0054242.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK15029.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-04
Identity = 38/108 (35.19%), Postives = 50/108 (46.30%), Query Frame = 0 

Query: 2   EVTNKTSGNLIRCLSGSKPKQWDLALTQGTCLRGSVS----------------------- 61
           EVTN+T GNLIRCLSGSKPKQWDL+L Q   +  ++                        
Sbjct: 254 EVTNRTLGNLIRCLSGSKPKQWDLSLAQAEFVFNNMRNRSTNKCPFEIVYTKQPRLTFDL 313

Query: 62  --------------------DQIHQEVIDHLQQSTLTY-TAADTSKEQ 66
                               +Q+H+EVIDHL ++T +Y  AAD  + Q
Sbjct: 314 ASLLTVVDINQEAENMAEKLEQLHKEVIDHLMKTTDSYKKAADMRRRQ 361

[Close]
BLAST of Lag0041127 vs. NCBI nr
Match: TYJ99684.1 (serine/threonine-protein kinase TIO-like [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 3.0e-04
Identity = 39/108 (36.11%), Postives = 51/108 (47.22%), Query Frame = 0 

Query: 2   EVTNKTSGNLIRCLSGSKPKQWDLALTQG------------------------------- 61
           EVTN+T GNLIRCLSG+KPKQWDLAL Q                                
Sbjct: 331 EVTNRTLGNLIRCLSGTKPKQWDLALAQAEFAFNNMKNRSTGKCPFKIVYTKQPRLTLDL 390

Query: 62  TCLRGSVS------------DQIHQEVIDHLQQSTLTY-TAADTSKEQ 66
           T L  +V+            +++H+EV DHL Q+T +Y  +AD  + Q
Sbjct: 391 TSLPTTVNLDKEAERMIGDIEKLHKEVYDHLVQTTYSYKKSADKKRRQ 438

[Close]
BLAST of Lag0041127 vs. NCBI nr
Match: KAA0054760.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 3.0e-04
Identity = 39/108 (36.11%), Postives = 51/108 (47.22%), Query Frame = 0 

Query: 2   EVTNKTSGNLIRCLSGSKPKQWDLALTQG------------------------------- 61
           EVTN+T GNLIRCLSG+KPKQWDLAL Q                                
Sbjct: 368 EVTNRTLGNLIRCLSGTKPKQWDLALAQAEFAFNNMKNRSTGECPFKIVYTKQPRLTLDL 427

Query: 62  TCLRGSVS------------DQIHQEVIDHLQQSTLTY-TAADTSKEQ 66
           T L  +V+            +++H+EV DHL Q+T +Y  +AD  + Q
Sbjct: 428 TSLPTTVNLDKEAERMIGDIEKLHKEVYDHLVQTTYSYKKSADKKRRQ 475

[Close]
BLAST of Lag0041127 vs. NCBI nr
Match: KAA0063034.1 (serine/threonine-protein kinase TIO-like [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 8.6e-04
Identity = 24/28 (85.71%), Postives = 25/28 (89.29%), Query Frame = 0 

Query: 2   EVTNKTSGNLIRCLSGSKPKQWDLALTQ 30
           EVTNKT GNLIRCLSG+KPKQWDL L Q
Sbjct: 271 EVTNKTLGNLIRCLSGTKPKQWDLVLAQ 298

[Close]
BLAST of Lag0041127 vs. ExPASy TrEMBL
Match: A0A5A7UEM2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00700 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.4e-05
Identity = 38/108 (35.19%), Postives = 50/108 (46.30%), Query Frame = 0 

Query: 2   EVTNKTSGNLIRCLSGSKPKQWDLALTQGTCLRGSVS----------------------- 61
           EVTN+T GNLIRCLSGSKPKQWDL+L Q   +  ++                        
Sbjct: 254 EVTNRTLGNLIRCLSGSKPKQWDLSLAQAEFVFNNMRNRSTNKCPFEIVYTKQPRLTFDL 313

Query: 62  --------------------DQIHQEVIDHLQQSTLTY-TAADTSKEQ 66
                               +Q+H+EVIDHL ++T +Y  AAD  + Q
Sbjct: 314 ASLLTVVDINQEAENMAEKLEQLHKEVIDHLMKTTDSYKKAADMRRRQ 361

[Close]
BLAST of Lag0041127 vs. ExPASy TrEMBL
Match: A0A5A7UHK1 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00380 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-04
Identity = 39/108 (36.11%), Postives = 51/108 (47.22%), Query Frame = 0 

Query: 2   EVTNKTSGNLIRCLSGSKPKQWDLALTQG------------------------------- 61
           EVTN+T GNLIRCLSG+KPKQWDLAL Q                                
Sbjct: 368 EVTNRTLGNLIRCLSGTKPKQWDLALAQAEFAFNNMKNRSTGECPFKIVYTKQPRLTLDL 427

Query: 62  TCLRGSVS------------DQIHQEVIDHLQQSTLTY-TAADTSKEQ 66
           T L  +V+            +++H+EV DHL Q+T +Y  +AD  + Q
Sbjct: 428 TSLPTTVNLDKEAERMIGDIEKLHKEVYDHLVQTTYSYKKSADKKRRQ 475

[Close]
BLAST of Lag0041127 vs. ExPASy TrEMBL
Match: A0A5D3BKX9 (Serine/threonine-protein kinase TIO-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00780 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-04
Identity = 39/108 (36.11%), Postives = 51/108 (47.22%), Query Frame = 0 

Query: 2   EVTNKTSGNLIRCLSGSKPKQWDLALTQG------------------------------- 61
           EVTN+T GNLIRCLSG+KPKQWDLAL Q                                
Sbjct: 331 EVTNRTLGNLIRCLSGTKPKQWDLALAQAEFAFNNMKNRSTGKCPFKIVYTKQPRLTLDL 390

Query: 62  TCLRGSVS------------DQIHQEVIDHLQQSTLTY-TAADTSKEQ 66
           T L  +V+            +++H+EV DHL Q+T +Y  +AD  + Q
Sbjct: 391 TSLPTTVNLDKEAERMIGDIEKLHKEVYDHLVQTTYSYKKSADKKRRQ 438

[Close]
BLAST of Lag0041127 vs. ExPASy TrEMBL
Match: A0A5A7V732 (Serine/threonine-protein kinase TIO-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G001460 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.2e-04
Identity = 24/28 (85.71%), Postives = 25/28 (89.29%), Query Frame = 0 

Query: 2   EVTNKTSGNLIRCLSGSKPKQWDLALTQ 30
           EVTNKT GNLIRCLSG+KPKQWDL L Q
Sbjct: 271 EVTNKTLGNLIRCLSGTKPKQWDLVLAQ 298

The following BLAST results are available for this feature:
BLAST of Lag0041127 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0054242.11.3e-0435.19reverse transcriptase [Cucumis melo var. makuwa] >TYK15029.1 reverse transcripta... [more]
TYJ99684.13.0e-0436.11serine/threonine-protein kinase TIO-like [Cucumis melo var. makuwa][more]
KAA0054760.13.0e-0436.11DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0063034.18.6e-0485.71serine/threonine-protein kinase TIO-like [Cucumis melo var. makuwa][more]
BLAST of Lag0041127 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0041127 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UEM26.4e-0535.19Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45... [more]
A0A5A7UHK11.4e-0436.11DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3BKX91.4e-0436.11Serine/threonine-protein kinase TIO-like OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7V7324.2e-0485.71Serine/threonine-protein kinase TIO-like OS=Cucumis melo var. makuwa OX=1194695 ... [more]
BLAST of Lag0041127 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 163..209

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0041127.1Lag0041127.1mRNA