Lag0041123 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0041123
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ribonuclease H
Location	chr13: 12447318 .. 12451130 (-)
RNA-Seq Expression	Lag0041123
Synteny	Lag0041123

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACATTTTACAAGGGGTTAAATGGAGTAACCCAGGGTATGGTTGATGCTTCGGCTAGAGGGGTCCTTTTGGCAAAAACTTTTAATGAAGCCCATGAAATTTTAGAAAAAATATCAACTAATAGTTGTCAGTGGTCAGATGTTAGAGGCACAAATAAAAAGGTTAAGAGTGTGTTAGAGGTTGATGGTGTGTCCACCATTAGGGTTGATATTGCAATGTTAGCCAACGCTCTTAAAAATGTGACAATGTTTAGTCATCAGCAGCCGCTGGCTATGGAGCCTGCTGCGGTGGTGAACCAAGTTACAGAGGAAGCATGTGTCTATTGTGGTGAAGAGCACAACTACGAATTTTGCCCCAACAATCCAGCTTCTGTGTTTTTTGTAGGTAATTAGAGGAATAACCCTTATTCTAACTTTTATAATCCAGGTTGGCGCAACCACCCCAACTTCGCATGGGGAGGACAAGGAAGCAATGTGCAAACACAGCAAATGGTGAACCAGTCGGGATTTGCTAAAGCGCAGGTATTGCCCCAACAAAATAAGCAGGCTTTGCCCTACAAAATTCAGAGAGTTCTCTTGAGGCAATGATGAAAGAATATATGGCTCGTATAGATGCTGCAATTCAAAGTAATCAAGCTTCAATGAGCCCTGGAATTGCAAGTGGGTCAGCTAGCTAATGAGCTGAAGGCAAGGCCTCAAGGGAAACTTCCCTTAGATACTGAACACCCTAAAAGAGAAGGTAAGAAGCAGGTATAGGCAGTGACATGACACCGCTGGTCGTCATCGACGATGATGCATGGTGGCTGACAGTTGGTGGCAAGGACTAGAAGAAGAAGAGAAATTAAATAATAATAAAGAATAATATTTAAATTATTTTTTTTTTAATTTAAAGAAATAATTTTTTAAATAAAAATTGGTGTCACGTCAGTAATCCGTTAATAATTAACAGAAAATTGGATGGAGCGACCAAAATGAAACGAAATTGAAATCTCAAGGACTAAAATGTCGAGATTTAAAACTTAGGAACCAAAATGAAACCTAACCCAAACCTTACCGGCCAAAAATGTATTTTGTCCTTAATTAAAATTTGATTTTAGATACTTTATTGGTTGAGTTCTATAGAATTTAAAGTAAATTCTTTTACTAAATTTTGAGGAAGCAATAACATTGCCAATTAATTCAAATTTAAGATAGGTCTACTTAATGAAATCAAAAGTTTAAAGTAAACTTCGTCATCGAATCGAACACTAGGACAAAAAAAAAAAAAAAAAAATTAAAAAAATTAAAAAAATTATATATCACGTACAATCCACGTGCTAAATTATTAGGTTTAAAAGTGTTAAATGAAATCGAAATTATTTAGAAAAGCAATTTTAATGATGATACTTTATGGATTGCCAACTAATATTGTCTCATAAATTTTGAACATTACATAACAAAGTGTTTGGTAGTTGATACTTGGAATTCAGGCCCCTCTACTCTTTATTTTCTTTATATATTTATATCGAAAAAGACCCTTCTGCGTAAATCCAGTATCTTCTTTCGTTTAATTCTTTTTTCTCTTTTTAAAAAGATTTCGTTTTTGTATTTGTCTCATTTGTCCCTTTTTTTTTTTCCCCTATATGTAAGAACGGCTTTAGGAAAAAGGAAATTAAAAATATGAACTCTAAAATAATTTCATGTTTAAAATAAACTCTCAAATTTCATTTTTTAATTACCTATTGAGTCAATTAGATATGTAACTTGCCAACATGAGTATAGTTCAACTGACATAAATCTTGTACCGATGACTAAGAAATTTGTGGTTCGAGTCCTCCCACGTCCACATATTGTCCAAAAAAAAAAAAAAAATTAGACATGTAACTTTTACCCGATGTTTAGCTACACGACAAAAAGTGCTTATGAGATTAAAATAAAAAAAAGCACTTAATTATGTTTTTTTTAATAACAATATTTATAGAAAAGGTACTTGAATTTAGTTTAGTTTCAAAGATTATTTCATTTTTGCACTCTCCAGTTATTTATTTATTTTTTTTAAGTTTTGAATTTTTTTTTTGAAATATAGTGCACATGATAAAGAATATTAGTATTGAATAAGTATTAATAAAAGAAGGAAAAAAGAATCAAAGATCTGTTTGTTAATAAAGAATATTTTTTGGTTTTTTGTTTTGAAAAACAAAACTCAACACTACTTTTAGTCTACTTTCTAAAAATGTCAAATCAGAACATGTTTGAGAAAAGTTTCATATTTTCTGTTTTTGAATGAGAGAACCATATTTGTTCAACCATAGTTTTTTTTTATTAATTTTTTTTTTTTATGTTATAACTACATTTTTCAAAAGTTATCACTATATTAATATTTATAAAATATTAAAGAGAAAGAGAGAGAGAAAAAAAATAGAGAGAGAAAAAATAGTTAGAGAGAGAACACTACAAGAAAGAGGCCTTTTAGCAACGAATTCTTAGTGACAAAAGTAGAATCATTGGATGGTCAATGACGAAAGCTTGATACCATTGCACATTTGTGACGAAATAATCTATTCATCGCATAATTTTGCGACAAAAATTTCCAAAGCGTTGCAAGTCCAATAATGTGTTCAAGAATAACATTATTTTGTTCTAGCTTATTTTGTAACTGTGCAACTTTACATGTGTTATAGGTAATTATGGATCATTCTGGAATTCAAGGAGCAGATGAGGACAACAAGACACGAAACCGAAGATGCGACCAGGAAATGGACCCTAGAGGGGAACTAGGCCATAGGGTTGGGCCAAGGCCGAAAGGATCGAGCCTTGGTCCAACCCCACGCTCGGCCTCAGCCCGCTTGTCACTTTGAGTCCCTTCCCCTCCGCTCGGTCCCTGGAGTCCTTTGGTTGCCCCGGTTCAACCTGGTTTAGCCTGAATCGTCTTCCCACGCCTAAAAACCCTACTATGCTAACCCATGTATAAATACCCTTCTTCACGTCTGGAGAAGGGTTCGAAACCTTATTATTATCACTCTTAACTTCTTGTTTGGTTGACTTAAGCATCAGAGTAGGTGTGGCAAGCACCACACCGGTGTGCAATTTTTGCTAGTTTTGCAGGTCACGTCTTCCCCAACTTCTACAAATTCATTGTTGGTGTCACGTGAAAGTCAAGTGAGTCTTCTGTCCGGATTTTTCCATCAATAGTTGGCGCCATCTGTGGGGAAGAAGGCTTGCCAGTGAAAACTGTATATTGACTGTGGTTGGAGCAGAGACAAGATATCCCTAAGTGGAAAAGCTTGCCCTTGCACTAGTCACAACGGCCGGGAGGTTGCACCCATATTTCCAAGCCCATAAAATCACGGTTTTGACTAAATTTTCCCTTAGGCAAGTACTGCAGAAACCTGAAACGTCAGGGCGTCTCATGAATGGGCAATTGAGTTGAGTGAATATGACATCCACTACAAACCGAGGACGTTAATGAAAGGACAGGCGGTTGCAAACTTTGTGGCAGAGCTGACGCATGCCAAGGTTGAGGCCGAGGGCGATCAGGCCGAGGCTGAGTAGAGTAGGATTGAGACTAAGATCAATTTCTTGGATTTGGAGGAACCAACCTAGACCTGGACCCTTTCTGTCAACGGATCCTCTAACACAAGGGGATATGAAGCAAGAATATTGTTGGAATCCCCAGAGGGAGAGGGATTTGAGTATGCTTTGAGATTCAATTTTAGAGCCTCACAAAATGAAGCAGAATATGAAGCTCTCCTTACAGGACTGAAGTTAGCCAGAGAAATTGGAATTTCAAATCTTGTGGTTCAGAGTGATTCACAGTTAATTGTAAAGTAG

mRNA sequence

ATGGAAACATTTTACAAGGGGTTAAATGGAGTAACCCAGGGTATGGTTGATGCTTCGGCTAGAGGGGTCCTTTTGGCAAAAACTTTTAATGAAGCCCATGAAATTTTAGAAAAAATATCAACTAATAGTTGTCAGTGGTCAGATGTTAGAGGCACAAATAAAAAGGTTAAGAGTGTGTTAGAGGTTGATGGTGTGTCCACCATTAGGGTTGATATTGCAATGTTAGCCAACGCTCTTAAAAATGTGACAATGTTTAGTCATCAGCAGCCGCTGGCTATGGAGCCTGCTGCGGTGGTGAACCAAGTTACAGAGGAAGCATGTGTCTATTGTGGTGAAGAGCACAACTACGAATTTTGCCCCAACAATCCAGCTTCTGTGTTTTTTGTAGGTTGGCGCAACCACCCCAACTTCGCATGGGGAGGACAAGGAAGCAATGTGCAAACACAGCAAATGGTGAACCAGTCGGGATTTGCTAAAGCGCAGCTAGCTAATGAGCTGAAGGCAAGGCCTCAAGGGAAACTTCCCTTAGATACTGAACACCCTAAAAGAGAAGGTAAGAAGCAGGTAATTATGGATCATTCTGGAATTCAAGGAGCAGATGAGGACAACAAGACACGAAACCGAAGATGCGACCAGGAAATGGACCCTAGAGGGGAACTAGGCCATAGGGTTGGGCCAAGGCCGAAAGGATCGAGCCTTGGTCCAACCCCACGCTCGGCCTCAGCCCGCTTGGCGTCTCATGAATGGGCAATTGAGTTGAGTGAATATGACATCCACTACAAACCGAGGACGTTAATGAAAGGACAGGCGGTTGCAAACTTTGTGGCAGAGCTGACGCATGCCAAGACCTGGACCCTTTCTGTCAACGGATCCTCTAACACAAGGGGATATGAAGCAAGAATATTGTTGGAATCCCCAGAGGGAGAGGGATTTGAGTATGCTTTGAGATTCAATTTTAGAGCCTCACAAAATGAAGCAGAATATGAAGCTCTCCTTACAGGACTGAAGTTAGCCAGAGAAATTGGAATTTCAAATCTTGTGGTTCAGAGTGATTCACAGTTAATTGTAAAGTAG

Coding sequence (CDS)

ATGGAAACATTTTACAAGGGGTTAAATGGAGTAACCCAGGGTATGGTTGATGCTTCGGCTAGAGGGGTCCTTTTGGCAAAAACTTTTAATGAAGCCCATGAAATTTTAGAAAAAATATCAACTAATAGTTGTCAGTGGTCAGATGTTAGAGGCACAAATAAAAAGGTTAAGAGTGTGTTAGAGGTTGATGGTGTGTCCACCATTAGGGTTGATATTGCAATGTTAGCCAACGCTCTTAAAAATGTGACAATGTTTAGTCATCAGCAGCCGCTGGCTATGGAGCCTGCTGCGGTGGTGAACCAAGTTACAGAGGAAGCATGTGTCTATTGTGGTGAAGAGCACAACTACGAATTTTGCCCCAACAATCCAGCTTCTGTGTTTTTTGTAGGTTGGCGCAACCACCCCAACTTCGCATGGGGAGGACAAGGAAGCAATGTGCAAACACAGCAAATGGTGAACCAGTCGGGATTTGCTAAAGCGCAGCTAGCTAATGAGCTGAAGGCAAGGCCTCAAGGGAAACTTCCCTTAGATACTGAACACCCTAAAAGAGAAGGTAAGAAGCAGGTAATTATGGATCATTCTGGAATTCAAGGAGCAGATGAGGACAACAAGACACGAAACCGAAGATGCGACCAGGAAATGGACCCTAGAGGGGAACTAGGCCATAGGGTTGGGCCAAGGCCGAAAGGATCGAGCCTTGGTCCAACCCCACGCTCGGCCTCAGCCCGCTTGGCGTCTCATGAATGGGCAATTGAGTTGAGTGAATATGACATCCACTACAAACCGAGGACGTTAATGAAAGGACAGGCGGTTGCAAACTTTGTGGCAGAGCTGACGCATGCCAAGACCTGGACCCTTTCTGTCAACGGATCCTCTAACACAAGGGGATATGAAGCAAGAATATTGTTGGAATCCCCAGAGGGAGAGGGATTTGAGTATGCTTTGAGATTCAATTTTAGAGCCTCACAAAATGAAGCAGAATATGAAGCTCTCCTTACAGGACTGAAGTTAGCCAGAGAAATTGGAATTTCAAATCTTGTGGTTCAGAGTGATTCACAGTTAATTGTAAAGTAG

Protein sequence

METFYKGLNGVTQGMVDASARGVLLAKTFNEAHEILEKISTNSCQWSDVRGTNKKVKSVLEVDGVSTIRVDIAMLANALKNVTMFSHQQPLAMEPAAVVNQVTEEACVYCGEEHNYEFCPNNPASVFFVGWRNHPNFAWGGQGSNVQTQQMVNQSGFAKAQLANELKARPQGKLPLDTEHPKREGKKQVIMDHSGIQGADEDNKTRNRRCDQEMDPRGELGHRVGPRPKGSSLGPTPRSASARLASHEWAIELSEYDIHYKPRTLMKGQAVANFVAELTHAKTWTLSVNGSSNTRGYEARILLESPEGEGFEYALRFNFRASQNEAEYEALLTGLKLAREIGISNLVVQSDSQLIVK

Homology

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BLAST of Lag0041123 vs. NCBI nr
Match: XP_022926214.1 (uncharacterized protein LOC111433394 [Cucurbita moschata])

HSP 1 Score: 165.2 bits (417), Expect = 1.0e-36
Identity = 89/210 (42.38%), Postives = 124/210 (59.05%), Query Frame = 0


Query: 1   METFYKGLNGVTQGMVDASARGVLLAKTFNEAHEILEKISTNSCQWSDVRGT-NKKVKSV 60
           METFY GLN  T+ +VDASA G +L+KT+NEA+EILE+I++N+CQW+DVR    +K + V
Sbjct: 213 METFYNGLNIATKQVVDASANGAILSKTYNEAYEILERIASNNCQWADVRSNPGRKTRGV 272

Query: 61  LEVDGVSTIRVDIAMLANALKNVTMFSHQQPLA-MEPAAVVNQVTEEACVYCGEEHNYEF 120
           LEVD +S+I   +A + N L+N+ +       A +   AV+NQ   E+CVYCGEEH ++ 
Sbjct: 273 LEVDALSSINAQLASVTNILQNLALGQDSMIKAPVHTVAVINQTAAESCVYCGEEHTFDQ 332

Query: 121 CPNNPASVFFV--------------------GWRNHPNFAWGGQGSNVQTQQ-------- 179
           CP+NPAS+F+V                    GWRNHPNF+W GQGS  Q           
Sbjct: 333 CPSNPASIFYVGNQASQGNPKNNPFSNTYNPGWRNHPNFSWKGQGSYNQQMPPKANYPPG 392

[Close]

BLAST of Lag0041123 vs. NCBI nr
Match: XP_023532393.1 (uncharacterized protein LOC111794553 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162.2 bits (409), Expect = 8.5e-36
Identity = 106/289 (36.68%), Postives = 142/289 (49.13%), Query Frame = 0


Query: 1   METFYKGLNGVTQGMVDASARGVLLAKTFNEAHEILEKISTNSCQWSDVRGT-NKKVKSV 60
           METFY GLN  T+ +VDASA G +L+KT+NEA+EILE+I++N+ QW+DVR     K + V
Sbjct: 1   METFYHGLNIATKHVVDASANGAILSKTYNEAYEILERITSNNFQWADVRSNQGNKTQRV 60

Query: 61  LEVDGVSTIRVDIAMLANALKNVTMFSHQQPLA-MEPAAVVNQVTEEACVYCGEEHNYEF 120
           LEVD +S+I+  +A + N L+N+ +       A +  AA++NQ   E+CVYCGEE+ ++ 
Sbjct: 61  LEVDALSSIKAQLASVTNILQNLALGQDSMFKAPVHTAAIINQTVAESCVYCGEEYTFDK 120

Query: 121 CPNNPASVFFV--------------------GWRNHPNFAWGGQGSNVQ----------- 180
           CP+N AS+F+V                    GWRNHPNF W GQGS+ Q           
Sbjct: 121 CPSNSASIFYVGNQASQGNSKNNPFSNTYNPGWRNHPNFLWKGQGSSNQQMPHKANYPPG 180

Query: 181 ---------TQQMVNQSG---------------------FAK------------------ 208
                      Q VN  G                      AK                  
Sbjct: 181 FGLQNQLAYNSQQVNTQGKGTSQAQYTSGTSIESLIQEYMAKNDVVIQSQQASLRNLEVQ 240

[Close]

BLAST of Lag0041123 vs. NCBI nr
Match: XP_022929949.1 (uncharacterized protein LOC111436411 [Cucurbita moschata])

HSP 1 Score: 161.0 bits (406), Expect = 1.9e-35
Identity = 89/221 (40.27%), Postives = 132/221 (59.73%), Query Frame = 0


Query: 1   METFYKGLNGVTQGMVDASARGVLLAKTFNEAHEILEKISTNSCQWSDVRGT-NKKVKSV 60
           METFY GLN VT+ +VDASA G +L+KT+NEA+EILE+I++N+CQW+DVR    +K + V
Sbjct: 242 METFYNGLNIVTKQVVDASANGAILSKTYNEAYEILERIASNNCQWADVRSNPGRKTRGV 301

Query: 61  LEVDGVSTIRVDIAMLANALKNVTMFSHQQPLA-MEPAAVVNQVTEEACVYCGEEHNYEF 120
           LEVD +S+I   +A + N L+N+ +       A +  AA +NQ   E+CVYCGEEH ++ 
Sbjct: 302 LEVDALSSINAQLASVTNILQNLALGQDSMIKAPVHTAAAINQTAAESCVYCGEEHTFDQ 361

Query: 121 CPNNPASVFFV--------------------GWRNHPNFAWGGQGSNVQTQQMVNQSGFA 180
           CP+NPAS+F+V                    GWRNHPNF+W GQ  ++  QQM  ++ + 
Sbjct: 362 CPSNPASIFYVGNQASQGNLKNNPFSNTYNPGWRNHPNFSWKGQ--SLYNQQMPPKANYP 421

Query: 181 KA-QLANEL-----KARPQGKLPLDTEHPKREGKKQVIMDH 194
              +L N+L     +   QGK     ++      + +I ++
Sbjct: 422 SGFRLQNQLAYSSQQVNTQGKGTTQAQYTSETSIESLIKEY 460

[Close]

BLAST of Lag0041123 vs. NCBI nr
Match: XP_022947838.1 (uncharacterized protein LOC111451598 [Cucurbita moschata])

HSP 1 Score: 157.5 bits (397), Expect = 2.1e-34
Identity = 103/267 (38.58%), Postives = 133/267 (49.81%), Query Frame = 0


Query: 1   METFYKGLNGVTQGMVDASARGVLLAKTFNEAHEILEKISTNSCQWSDVRGT-NKKVKSV 60
           +ETFY GLN  T+ +VDASA G +L+KT+NEA+EILE+I++N+CQW DVR    KK + V
Sbjct: 183 IETFYNGLNTATKQVVDASANGDILSKTYNEAYEILERIASNNCQWVDVRSNPGKKTREV 242

Query: 61  LEVDGVSTIRVDIAMLANALKNVTMFSHQQPLA-MEPAAVVNQVTEEACVYCGEEHNYEF 120
           LEVD +S+I   +A + N L+N+         A    A V+ Q   E+CVYCGE+H ++ 
Sbjct: 243 LEVDALSSINAQLASMTNILQNLAFGQGSMIKAPAHTATVMIQTATESCVYCGEKHTFDQ 302

Query: 121 CPNNPASVFFV--------------------GWRNHPNFAWGGQGSNVQ----------- 180
           CP+NPAS+F+V                    GWRNHPNF   GQGS  Q           
Sbjct: 303 CPSNPASIFYVGNQASQGNPKTNPSSNTYNPGWRNHPNFLCKGQGSYNQQMPPKANYPPG 362

Query: 181 ----------TQQMVNQ-SGFAKA------------------------------------ 186
                     +QQ   Q  G ++A                                    
Sbjct: 363 FGLQNQLTYDSQQATTQGEGTSQAQHISGTLLESLIKEYMARNDAVIQSQQVSLRNLEVQ 422

[Close]

BLAST of Lag0041123 vs. NCBI nr
Match: XP_022960432.1 (uncharacterized protein LOC111461168 [Cucurbita moschata])

HSP 1 Score: 156.8 bits (395), Expect = 3.6e-34
Identity = 80/166 (48.19%), Postives = 105/166 (63.25%), Query Frame = 0


Query: 1   METFYKGLNGVTQGMVDASARGVLLAKTFNEAHEILEKISTNSCQWSDVRGT-NKKVKSV 60
           METFY GLN  T+ +VDASA G +L+KT+NEA+EILE+I++N+CQW+DVR    KK + V
Sbjct: 204 METFYNGLNIATKQVVDASANGAMLSKTYNEAYEILERIASNNCQWADVRSNPGKKTRGV 263

Query: 61  LEVDGVSTIRVDIAMLANALKNVTMFSHQQPLA-MEPAAVVNQVTEEACVYCGEEHNYEF 120
           LEVD +S+I   +A + N L+N+         A    AAV+ Q   E+CVYCGEEH ++ 
Sbjct: 264 LEVDALSSINAQLASVTNILQNLAFGQGTMIKAPAHTAAVMTQTATESCVYCGEEHTFDQ 323

Query: 121 CPNNPASVFFV--------------------GWRNHPNFAWGGQGS 145
           CP NPAS+ +V                    GWRNHPNF+W GQGS
Sbjct: 324 CPRNPASILYVRNQASQGNQKNNPSSNTYNPGWRNHPNFSWKGQGS 369

[Close]

BLAST of Lag0041123 vs. ExPASy TrEMBL
Match: A0A6J1EEI2 (uncharacterized protein LOC111433394 OS=Cucurbita moschata OX=3662 GN=LOC111433394 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 4.9e-37
Identity = 89/210 (42.38%), Postives = 124/210 (59.05%), Query Frame = 0


Query: 1   METFYKGLNGVTQGMVDASARGVLLAKTFNEAHEILEKISTNSCQWSDVRGT-NKKVKSV 60
           METFY GLN  T+ +VDASA G +L+KT+NEA+EILE+I++N+CQW+DVR    +K + V
Sbjct: 213 METFYNGLNIATKQVVDASANGAILSKTYNEAYEILERIASNNCQWADVRSNPGRKTRGV 272

Query: 61  LEVDGVSTIRVDIAMLANALKNVTMFSHQQPLA-MEPAAVVNQVTEEACVYCGEEHNYEF 120
           LEVD +S+I   +A + N L+N+ +       A +   AV+NQ   E+CVYCGEEH ++ 
Sbjct: 273 LEVDALSSINAQLASVTNILQNLALGQDSMIKAPVHTVAVINQTAAESCVYCGEEHTFDQ 332

Query: 121 CPNNPASVFFV--------------------GWRNHPNFAWGGQGSNVQTQQ-------- 179
           CP+NPAS+F+V                    GWRNHPNF+W GQGS  Q           
Sbjct: 333 CPSNPASIFYVGNQASQGNPKNNPFSNTYNPGWRNHPNFSWKGQGSYNQQMPPKANYPPG 392

[Close]

BLAST of Lag0041123 vs. ExPASy TrEMBL
Match: A0A6J1EQ90 (uncharacterized protein LOC111436411 OS=Cucurbita moschata OX=3662 GN=LOC111436411 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 9.2e-36
Identity = 89/221 (40.27%), Postives = 132/221 (59.73%), Query Frame = 0


Query: 1   METFYKGLNGVTQGMVDASARGVLLAKTFNEAHEILEKISTNSCQWSDVRGT-NKKVKSV 60
           METFY GLN VT+ +VDASA G +L+KT+NEA+EILE+I++N+CQW+DVR    +K + V
Sbjct: 242 METFYNGLNIVTKQVVDASANGAILSKTYNEAYEILERIASNNCQWADVRSNPGRKTRGV 301

Query: 61  LEVDGVSTIRVDIAMLANALKNVTMFSHQQPLA-MEPAAVVNQVTEEACVYCGEEHNYEF 120
           LEVD +S+I   +A + N L+N+ +       A +  AA +NQ   E+CVYCGEEH ++ 
Sbjct: 302 LEVDALSSINAQLASVTNILQNLALGQDSMIKAPVHTAAAINQTAAESCVYCGEEHTFDQ 361

Query: 121 CPNNPASVFFV--------------------GWRNHPNFAWGGQGSNVQTQQMVNQSGFA 180
           CP+NPAS+F+V                    GWRNHPNF+W GQ  ++  QQM  ++ + 
Sbjct: 362 CPSNPASIFYVGNQASQGNLKNNPFSNTYNPGWRNHPNFSWKGQ--SLYNQQMPPKANYP 421

Query: 181 KA-QLANEL-----KARPQGKLPLDTEHPKREGKKQVIMDH 194
              +L N+L     +   QGK     ++      + +I ++
Sbjct: 422 SGFRLQNQLAYSSQQVNTQGKGTTQAQYTSETSIESLIKEY 460

[Close]

BLAST of Lag0041123 vs. ExPASy TrEMBL
Match: A0A6J1G7Q6 (uncharacterized protein LOC111451598 OS=Cucurbita moschata OX=3662 GN=LOC111451598 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.0e-34
Identity = 103/267 (38.58%), Postives = 133/267 (49.81%), Query Frame = 0


Query: 1   METFYKGLNGVTQGMVDASARGVLLAKTFNEAHEILEKISTNSCQWSDVRGT-NKKVKSV 60
           +ETFY GLN  T+ +VDASA G +L+KT+NEA+EILE+I++N+CQW DVR    KK + V
Sbjct: 183 IETFYNGLNTATKQVVDASANGDILSKTYNEAYEILERIASNNCQWVDVRSNPGKKTREV 242

Query: 61  LEVDGVSTIRVDIAMLANALKNVTMFSHQQPLA-MEPAAVVNQVTEEACVYCGEEHNYEF 120
           LEVD +S+I   +A + N L+N+         A    A V+ Q   E+CVYCGE+H ++ 
Sbjct: 243 LEVDALSSINAQLASMTNILQNLAFGQGSMIKAPAHTATVMIQTATESCVYCGEKHTFDQ 302

Query: 121 CPNNPASVFFV--------------------GWRNHPNFAWGGQGSNVQ----------- 180
           CP+NPAS+F+V                    GWRNHPNF   GQGS  Q           
Sbjct: 303 CPSNPASIFYVGNQASQGNPKTNPSSNTYNPGWRNHPNFLCKGQGSYNQQMPPKANYPPG 362

Query: 181 ----------TQQMVNQ-SGFAKA------------------------------------ 186
                     +QQ   Q  G ++A                                    
Sbjct: 363 FGLQNQLTYDSQQATTQGEGTSQAQHISGTLLESLIKEYMARNDAVIQSQQVSLRNLEVQ 422

[Close]

BLAST of Lag0041123 vs. ExPASy TrEMBL
Match: A0A6J1H7E4 (uncharacterized protein LOC111461168 OS=Cucurbita moschata OX=3662 GN=LOC111461168 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.7e-34
Identity = 80/166 (48.19%), Postives = 105/166 (63.25%), Query Frame = 0


Query: 1   METFYKGLNGVTQGMVDASARGVLLAKTFNEAHEILEKISTNSCQWSDVRGT-NKKVKSV 60
           METFY GLN  T+ +VDASA G +L+KT+NEA+EILE+I++N+CQW+DVR    KK + V
Sbjct: 204 METFYNGLNIATKQVVDASANGAMLSKTYNEAYEILERIASNNCQWADVRSNPGKKTRGV 263

Query: 61  LEVDGVSTIRVDIAMLANALKNVTMFSHQQPLA-MEPAAVVNQVTEEACVYCGEEHNYEF 120
           LEVD +S+I   +A + N L+N+         A    AAV+ Q   E+CVYCGEEH ++ 
Sbjct: 264 LEVDALSSINAQLASVTNILQNLAFGQGTMIKAPAHTAAVMTQTATESCVYCGEEHTFDQ 323

Query: 121 CPNNPASVFFV--------------------GWRNHPNFAWGGQGS 145
           CP NPAS+ +V                    GWRNHPNF+W GQGS
Sbjct: 324 CPRNPASILYVRNQASQGNQKNNPSSNTYNPGWRNHPNFSWKGQGS 369

[Close]

BLAST of Lag0041123 vs. ExPASy TrEMBL
Match: A0A6J1DJC7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111021439 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.3e-31
Identity = 77/124 (62.10%), Postives = 91/124 (73.39%), Query Frame = 0


Query: 248 EWAIELSEYDIHYKPRTLMKGQAVANFVAELT---------------HAKTWTLSVNGSS 307
           +WA+ELSEYDIHYKPRT MK QAVA+F+AELT                 + WTL V+GSS
Sbjct: 57  KWAVELSEYDIHYKPRTAMKRQAVADFIAELTPTEPQVYSIDRQVVEEEQLWTLYVDGSS 116

Query: 308 NTRGYEARILLESPEGEGFEYALRFNFRASQNEAEYEALLTGLKLAREIGISNLVVQSDS 357
           N RG  AR+LL SP+ E FEYALRFNF AS NEAEYEALL GLK+AR +G+ N+++ SDS
Sbjct: 117 NFRGCGARLLLISPDKERFEYALRFNFHASNNEAEYEALLAGLKVARYVGVRNILILSDS 176

The following BLAST results are available for this feature:

BLAST of Lag0041123 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926214.1	1.0e-36	42.38	uncharacterized protein LOC111433394 [Cucurbita moschata]	[more]
XP_023532393.1	8.5e-36	36.68	uncharacterized protein LOC111794553 [Cucurbita pepo subsp. pepo]	[more]
XP_022929949.1	1.9e-35	40.27	uncharacterized protein LOC111436411 [Cucurbita moschata]	[more]
XP_022947838.1	2.1e-34	38.58	uncharacterized protein LOC111451598 [Cucurbita moschata]	[more]
XP_022960432.1	3.6e-34	48.19	uncharacterized protein LOC111461168 [Cucurbita moschata]	[more]

BLAST of Lag0041123 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0041123 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EEI2	4.9e-37	42.38	uncharacterized protein LOC111433394 OS=Cucurbita moschata OX=3662 GN=LOC1114333...	[more]
A0A6J1EQ90	9.2e-36	40.27	uncharacterized protein LOC111436411 OS=Cucurbita moschata OX=3662 GN=LOC1114364...	[more]
A0A6J1G7Q6	1.0e-34	38.58	uncharacterized protein LOC111451598 OS=Cucurbita moschata OX=3662 GN=LOC1114515...	[more]
A0A6J1H7E4	1.7e-34	48.19	uncharacterized protein LOC111461168 OS=Cucurbita moschata OX=3662 GN=LOC1114611...	[more]
A0A6J1DJC7	2.3e-31	62.10	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111021439 PE=4 SV=1	[more]

BLAST of Lag0041123 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 282..357 e-value: 2.9E-11 score: 45.5
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 311..357 e-value: 2.4E-8 score: 33.8
IPR002156	Ribonuclease H domain	PROSITE	PS50879	RNASE_H	coord: 280..357 score: 9.864173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 194..241
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 197..224
None	No IPR available	PANTHER	PTHR46387:SF6	14.7 KDA RIBONUCLEASE H-LIKE PROTEIN	coord: 265..356
None	No IPR available	PANTHER	PTHR46387	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN	coord: 265..356
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 282..357

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0041123.1	Lag0041123.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity