Lag0041116 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0041116
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Serine/threonine-protein phosphatase 7 long form-like protein
Location	chr13: 12275512 .. 12276060 (+)
RNA-Seq Expression	Lag0041116
Synteny	Lag0041116

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATAAGTGTCTGCCATTTGTTCTGCATACAAATGGTACCATGATTGATGGTGTTAATGGGATTGAATATGACCAACCAGTCTGTGGAGGTTTTACTGTGAATGTGAATAGTGGGATTGTGTTTAACCAGTTTATTGAAATGATAGGGATGTCTCTTGGTATAGATGTAAGGGCCAATCAGTTAGAGATAGTGTATAGACACCCTGAGGTAACAATATCAGGATCTGTAAGGTATATGCCAATATCAATTTCTAATGACCAGACAATGAAGTTTATGTTCTCAATTGCGTTGCCTACCCCAAATTTAGTGCATTTATATGTTACTATAAGGAGGGTGGGCATGGATTCACAAAATTTAGGAGAAGACCCTAGCCAATGTGTTGACCTGAGTCAATGTCTTGATCCTGAGCCTGAATCAATGGTGCCTCCACATGATGGTGAAGATGTGGTGGTAGATAATACTTTTAAAGAGTTAAGGACAGAGACAGATGATGAATTTGAAAATTTAGACTTCGATGGTCGTGAACATATTATCTCATCATAA

mRNA sequence

ATGGAAGATAAGTGTCTGCCATTTGTTCTGCATACAAATGGTACCATGATTGATGGTGTTAATGGGATTGAATATGACCAACCAGTCTGTGGAGGTTTTACTGTGAATGTGAATAGTGGGATTGTGTTTAACCAGTTTATTGAAATGATAGGGATGTCTCTTGGTATAGATGTAAGGGCCAATCAGTTAGAGATAGTGTATAGACACCCTGAGGTAACAATATCAGGATCTGTAAGGTATATGCCAATATCAATTTCTAATGACCAGACAATGAAGTTTATGTTCTCAATTGCGTTGCCTACCCCAAATTTAGTGCATTTATATGTTACTATAAGGAGGGTGGGCATGGATTCACAAAATTTAGGAGAAGACCCTAGCCAATGTGTTGACCTGAGTCAATGTCTTGATCCTGAGCCTGAATCAATGGTGCCTCCACATGATGGTGAAGATGTGGTGGTAGATAATACTTTTAAAGAGTTAAGGACAGAGACAGATGATGAATTTGAAAATTTAGACTTCGATGGTCGTGAACATATTATCTCATCATAA

Coding sequence (CDS)

ATGGAAGATAAGTGTCTGCCATTTGTTCTGCATACAAATGGTACCATGATTGATGGTGTTAATGGGATTGAATATGACCAACCAGTCTGTGGAGGTTTTACTGTGAATGTGAATAGTGGGATTGTGTTTAACCAGTTTATTGAAATGATAGGGATGTCTCTTGGTATAGATGTAAGGGCCAATCAGTTAGAGATAGTGTATAGACACCCTGAGGTAACAATATCAGGATCTGTAAGGTATATGCCAATATCAATTTCTAATGACCAGACAATGAAGTTTATGTTCTCAATTGCGTTGCCTACCCCAAATTTAGTGCATTTATATGTTACTATAAGGAGGGTGGGCATGGATTCACAAAATTTAGGAGAAGACCCTAGCCAATGTGTTGACCTGAGTCAATGTCTTGATCCTGAGCCTGAATCAATGGTGCCTCCACATGATGGTGAAGATGTGGTGGTAGATAATACTTTTAAAGAGTTAAGGACAGAGACAGATGATGAATTTGAAAATTTAGACTTCGATGGTCGTGAACATATTATCTCATCATAA

Protein sequence

MEDKCLPFVLHTNGTMIDGVNGIEYDQPVCGGFTVNVNSGIVFNQFIEMIGMSLGIDVRANQLEIVYRHPEVTISGSVRYMPISISNDQTMKFMFSIALPTPNLVHLYVTIRRVGMDSQNLGEDPSQCVDLSQCLDPEPESMVPPHDGEDVVVDNTFKELRTETDDEFENLDFDGREHIISS

Homology

[Close]

BLAST of Lag0041116 vs. NCBI nr
Match: KAA0041167.1 (uncharacterized protein E6C27_scaffold128G00980 [Cucumis melo var. makuwa])

HSP 1 Score: 193.0 bits (489), Expect = 2.3e-45
Identity = 96/186 (51.61%), Postives = 129/186 (69.35%), Query Frame = 0


Query: 1   MEDKCLPFVLHTNGTMIDGVNGIEYDQPVCGGFTVNVNSGIVFNQFIEMIGMSLGIDVRA 60
           M DK L F+L  NG MIDG +GI+YDQP CGGFT++VNSGIVF QFIE++G S+GID+R 
Sbjct: 1   MADKILGFMLFVNGNMIDGSDGIDYDQPACGGFTISVNSGIVFEQFIEIVGSSVGIDIRI 60

Query: 61  NQLEIVYRHPEVTISGSVRYMPISISNDQTMKFMFSIALPTPNLVHLYVTIRRVGMDSQN 120
           + +EI+YRHP++T SG +R+MP  I N+Q MK MFSIA+P  N+VHLYV + RV +D   
Sbjct: 61  SDIEIIYRHPDLTPSGLIRFMPFPIPNEQAMKTMFSIAMPISNMVHLYVNVSRVSLDINL 120

Query: 121 LGEDPSQCVDLSQCLDPEPESMVP-PHDGEDVVVDNTFKELRTETD---DEFENLDFDGR 180
             +   Q  D +Q + P+ E +    +D E+++ +N   + RTE D   DEFE  DFDGR
Sbjct: 121 NSKSFCQLEDRTQVIVPDSELVASLVYDDEEMMANNDNIDFRTEIDDEFDEFEEFDFDGR 180

Query: 181 EHIISS 183
           EH + S
Sbjct: 181 EHELPS 186

[Close]

BLAST of Lag0041116 vs. NCBI nr
Match: TYJ95836.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 134.0 bits (336), Expect = 1.3e-27
Identity = 71/136 (52.21%), Postives = 97/136 (71.32%), Query Frame = 0


Query: 49  MIGMSLGIDVRANQLEIVYRHPEVTISGSVRYMPISISNDQTMKFMFSIALPTPNLVHLY 108
           M+G+SLG+D+ ++Q+EI+YRHP +T SG+VR+MP  ISN+Q M  MFSIALP PN+VHLY
Sbjct: 1   MVGLSLGVDMSSSQIEIIYRHPNLTASGTVRFMPFPISNEQEMNTMFSIALPFPNMVHLY 60

Query: 109 VTIRRVGMDSQNLGEDPSQCVDLSQCLDPEPESMVPP--HDGEDVVVDNTFKELRTETDD 168
           VT+  V   + NL  +P     + + +D EPES  PP  H+ E++V  N + E RTETDD
Sbjct: 61  VTVSMVD-TAINLNVEPRY---VEEYVDVEPESDAPPVCHE-EEMVATNEYTEFRTETDD 120

Query: 169 EFENLDFDGREHIISS 183
           EFE +DFDG E+ + S
Sbjct: 121 EFEEMDFDGCEYEVPS 131

[Close]

BLAST of Lag0041116 vs. NCBI nr
Match: KAA0034014.1 (uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa])

HSP 1 Score: 132.5 bits (332), Expect = 3.7e-27
Identity = 70/136 (51.47%), Postives = 97/136 (71.32%), Query Frame = 0


Query: 49  MIGMSLGIDVRANQLEIVYRHPEVTISGSVRYMPISISNDQTMKFMFSIALPTPNLVHLY 108
           M+G+SLG+D+ ++Q+EI+YRHP +T SG+VR++P  ISN+Q M  MFSIALP PN+VHLY
Sbjct: 1   MVGLSLGVDMSSSQIEIIYRHPNLTASGTVRFIPFPISNEQEMNTMFSIALPFPNMVHLY 60

Query: 109 VTIRRVGMDSQNLGEDPSQCVDLSQCLDPEPESMVPP--HDGEDVVVDNTFKELRTETDD 168
           VT+  V   + NL  +P     + + +D EPES  PP  H+ E++V  N + E RTETDD
Sbjct: 61  VTVSMVD-TAINLNVEPRY---VEEYVDVEPESDAPPVCHE-EEMVATNEYTEFRTETDD 120

Query: 169 EFENLDFDGREHIISS 183
           EFE +DFDG E+ + S
Sbjct: 121 EFEEMDFDGCEYEVPS 131

[Close]

BLAST of Lag0041116 vs. NCBI nr
Match: KAA0036768.1 (uncharacterized protein E6C27_scaffold20G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 127.1 bits (318), Expect = 1.5e-25
Identity = 69/136 (50.74%), Postives = 95/136 (69.85%), Query Frame = 0


Query: 49  MIGMSLGIDVRANQLEIVYRHPEVTISGSVRYMPISISNDQTMKFMFSIALPTPNLVHLY 108
           M+G+SLG+D+ ++Q+EI+YRHP +T SG+VR+MP  ISN+Q M  MFSIAL  PN+VHLY
Sbjct: 1   MVGLSLGVDMSSSQIEIIYRHPNLTASGTVRFMPFPISNEQEMNTMFSIALSFPNMVHLY 60

Query: 109 VTIRRVGMDSQNLGEDPSQCVDLSQCLDPEPESMVP--PHDGEDVVVDNTFKELRTETDD 168
           VT+  V   + NL  +P     + + +D EPES  P   H+ E++V  N + E RTETDD
Sbjct: 61  VTVSMVD-TAINLNVEPRY---VEEYVDVEPESDAPLVCHE-EEMVATNEYTEFRTETDD 120

Query: 169 EFENLDFDGREHIISS 183
           EFE +DFDG E+ + S
Sbjct: 121 EFEEMDFDGCEYEVPS 131

[Close]

BLAST of Lag0041116 vs. NCBI nr
Match: KAA0040476.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa] >TYK23484.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 125.2 bits (313), Expect = 5.9e-25
Identity = 68/136 (50.00%), Postives = 94/136 (69.12%), Query Frame = 0


Query: 49  MIGMSLGIDVRANQLEIVYRHPEVTISGSVRYMPISISNDQTMKFMFSIALPTPNLVHLY 108
           M+G+SLG+D+ ++Q+EI+YRH  +T SG+VR+MP  ISN+Q M  MFSI LP  N+VHLY
Sbjct: 1   MVGLSLGVDMSSSQIEIIYRHLNLTASGTVRFMPFPISNEQEMNTMFSITLPFLNMVHLY 60

Query: 109 VTIRRVGMDSQNLGEDPSQCVDLSQCLDPEPESMVPP--HDGEDVVVDNTFKELRTETDD 168
           VT+  V   + NL  +P     + + +D EPES  PP  H+ E++V  N + E RTETDD
Sbjct: 61  VTVSMVD-TAINLNVEPRY---VEEYVDVEPESNAPPVCHE-EEMVATNEYTEFRTETDD 120

Query: 169 EFENLDFDGREHIISS 183
           EFE +DFDG E+ + S
Sbjct: 121 EFEEMDFDGCEYEVPS 131

The following BLAST results are available for this feature:

BLAST of Lag0041116 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041167.1	2.3e-45	51.61	uncharacterized protein E6C27_scaffold128G00980 [Cucumis melo var. makuwa]	[more]
TYJ95836.1	1.3e-27	52.21	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0034014.1	3.7e-27	51.47	uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa]	[more]
KAA0036768.1	1.5e-25	50.74	uncharacterized protein E6C27_scaffold20G00510 [Cucumis melo var. makuwa]	[more]
KAA0040476.1	5.9e-25	50.00	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]

BLAST of Lag0041116 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0041116.1	Lag0041116.1	mRNA