Lag0041109 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0041109
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr13: 12173135 .. 12175003 (-)
RNA-Seq Expression	Lag0041109
Synteny	Lag0041109

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGGCCTTGGAGTTGGGATGTTTGGCCTTGGCATGACGATGCGTACACTCTTCTGGGGAAAAGGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTACGCTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACGCTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGCTTGGGGAGGCCTAGGAAATTCCCGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTTTCTTCAAGCTGTTGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTTTCTTCAAGCTGTTGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGATTGGGGAGGCCAAGGAAATTCTCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTTTCTTCAAGCTGTTGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGTTGTTGTAGTCATCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTTTCTTCAAGCTGTTGTAG

mRNA sequence

ATGGTTGGCCTTGGAGTTGGGATGTTTGGCCTTGGCATGACGATGCGTACACTCTTCTGGGGAAAAGGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTACGCTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACGCTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCCAGGGCGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTTTCTTCAAGCTGTTGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCAGGGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTTTCTTCAAGCTGTTGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTTTCTTCAAGCTGTTGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGTTGTTGTAGTCATCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTTTCTTCAAGCTGTTGTAG

Coding sequence (CDS)

ATGGTTGGCCTTGGAGTTGGGATGTTTGGCCTTGGCATGACGATGCGTACACTCTTCTGGGGAAAAGGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTCATGGTCATCCCAGGGGTGCGTACGCTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACGCTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCCAGGGCGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTTTCTTCAAGCTGTTGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCAGGGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTTTCTTCAAGCTGTTGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTTTCTTCAAGCTGTTGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGGGCCTCTCTTCAAGCGTCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTCTCTTCAAGTTGTTGTAGTCATCCAGGGGTGCGTACACTCTTCTGGGGAAAGGCTTGGGGAGGCCAAGGAAATTCCCGAGCCTTTCTTCAAGCTGTTGTAG

Protein sequence

MVGLGVGMFGLGMTMRTLFWGKGLGRPRKFPSLSSSCHGHPRGAYALLGKSLGRPRKFPSLSSSCCSHPRGAYTLLGKSLGRPRKFPSLSSSCCSHPRGAYTLLGKSLGRPRKFPGLSSSVMVIPGVRTLFWGKAWGGLGNSRASLQAVVVIPGVRTLFWGKAWGGLGNSRASLQAVVVIPGVRTLFWGKAWGGLGNSRASLQAVVVIPGRHGHPRGAYTLLGKGLGRPRKFPSLSSSCCSHPGVRTLFWGKAWGGQGNSRAFLQAVVVIPGVRTLFWGKAWGGQGNSRASLQAVVVIQGGAYTLLGKGLGRPRKFPSLSSSCCSHPGVRTLFWGKAWGGQGNSRAFLQAVVVIPGVRTLFWGKAWGGQGNSRASLQAVVVIPGVRTLFWGKAWGGLGNSRASLQASWSSQGGAYTLLGKGLGRPRKFPSLSSSCCSHPRGAYTLLGKGLGRPRKFPSLSSSCCSHPRGAYTLLGKSLGRPRKFPGLSSSVMVIPGVRTLFWGKAWGGQGNSRASLQVVVVIQGCVHSSGERLGEAKEIPEPFFKLL

Homology

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BLAST of Lag0041109 vs. NCBI nr
Match: XP_028178287.1 (uncharacterized protein LOC114365810 [Ostrinia furnacalis])

HSP 1 Score: 69.7 bits (169), Expect = 8.8e-08
Identity = 77/288 (26.74%), Postives = 105/288 (36.46%), Query Frame = 0


Query: 134  KAWGGLGNSRASLQAVVVIPGVRTLFWGKAWGGLGNSRASLQAVVVIPGVRTLFWGKAWG 193
            +A GG+G + A   A       +     +  GGLG S A+ +A+    G         WG
Sbjct: 1011 QAQGGVGGALAEALA-------QAQAQAQGLGGLGGSSANAEALANAAG---------WG 1070

Query: 194  GLGNSRASLQAVVVIPGRHGHPRGAYTLLGKGLGRPRKFPSLSSSCCSHPGVRTLFWGKA 253
            GLG S A+ QA  +         G +  LG G        +  +   ++ G         
Sbjct: 1071 GLGGSSANAQADALANA------GGWGGLGGGSA------NAQADALANAG--------G 1130

Query: 254  WGGQGNSRAFLQAVVVIPGVRTLFWGKAWGGQGNSRASLQAVVVIQGGAYTLLGKGLGRP 313
            WGG G   A  QA         L   + WGG G   A+ QA  +   G +  LG G    
Sbjct: 1131 WGGLGGGSANAQA-------DALANARGWGGLGGGSANAQADALANAGGWGGLGGGSA-- 1190

Query: 314  RKFPSLSSSCCSHPGVRTLFWGKAWGGQGNSRAFLQAVVVIPGVRTLFWGKAWGGQGNSR 373
                +  +   ++ G         WGG G   A  QA         L     WGG G   
Sbjct: 1191 ----NAQADALANAG--------GWGGLGGGSANAQA-------DALANAGGWGGLGGGS 1227

Query: 374  ASLQAVVVIPGVRTLFWGKAWGGLGNSRASLQASWSSQGGAYTLLGKG 422
            A+ QA         L     WGGLG S A+ QA  ++  G +  LG G
Sbjct: 1251 ANAQA-------DALANAGGWGGLGGSSANAQADATANAGGWGGLGGG 1227

The following BLAST results are available for this feature:

BLAST of Lag0041109 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_028178287.1	8.8e-08	26.74	uncharacterized protein LOC114365810 [Ostrinia furnacalis]	[more]

BLAST of Lag0041109 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0041109 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0041109 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017956	AT hook, DNA-binding motif	SMART	SM00384	AT_hook_2	coord: 307..319 e-value: 3.1 score: 12.5 coord: 77..89 e-value: 11.0 score: 9.4 coord: 419..431 e-value: 3.1 score: 12.5 coord: 475..487 e-value: 14.0 score: 8.8 coord: 105..117 e-value: 14.0 score: 8.8 coord: 21..33 e-value: 3.1 score: 12.5 coord: 223..235 e-value: 3.1 score: 12.5 coord: 49..61 e-value: 11.0 score: 9.4 coord: 447..459 e-value: 3.1 score: 12.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0041109.1	Lag0041109.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding