Lag0041102 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0041102
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr13: 12023278 .. 12029325 (-)
RNA-Seq Expression	Lag0041102
Synteny	Lag0041102

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTCTCAGACGGGGCATGGGGAAAATAAGGTGTTCCGAAAGGTGAAGGATCAGTGGCGGATCCAGAACTTTAAGTGAGGGGGGCTACGTAGAAATAATTTTAGTATATGCTTAAAATTGGTCCCTACCGTAAGTTTAAGTTAACTCTCATCTAAATTTGTTAAATAATAATTTTCATACAATAAGAGATAAAAAAATATTAATAGAGACCAATATTTTTAGAAAAAATAACAATAAACCCATTGTATATTATTGAAAGTACTTAGACTAAAATTGGACATTTCAAAGTACAATGACTAAAATGATATTTTGAACACAAAGATATATGTTAATATCAATTCATATATTTTGATATTAAATTTGTTAATTTATAAATTTAGTCAGTTTTCAAGATTATGCACAACAAATCACTAACTTTAAAAAGTTTCTACTAAGTCCCTAAACTTTCACTTTTCTATCTGATAGGTTTTTGAATTTTTTTTTATTGGGGAATTGTGTTGAATAACTACAAATAACAGGCATCCTTGATTTTTGGCTACACAAGTTTTGATTTTGCAGGTGTGGCTACCGGGATTTTAGGAACTGTTTCCTTTTTTTTTTTACGTTTTTACCCCTAGTATATATGGCTATATACAAACGCCGTTAACAGTCTTTTTTGTTGCAAACGTCCCCTTTTTGTGTGGTGGATGGATCCCTACTTACATGGGATCGGTTGGCGGTTTGTTTTGATCCTGATTTACCTATTTTTCAGGCTTAGGCTTTCTAAGGGTAAAAAAAATATGTATTTTAGCGGCATGAAGCAGTCAACAGATGAATTACCCCAAAAAAATACATCAAACAATTCCATAGTTGTATGTAACAGTTCAATCTACACAGACAACAGACGTACAATATCATAGATGTATATACTAATACATACACGTTCACAGGCAGACAATGGAGGGTATATAACTGTTCAAACACACGTACATACGAGCATATATATATATATAGATGTACGAGATAGTAGTTGTATATATCATTATATAAATGTATGAGATCATGGATGTATATACTAATACATACACGTTCACAGGCAGACAATGTACACAGGCTTGCCAATACATAGATTGCAAGGTGCATGGGGTATATAACTCCTTTCACATACTTTCATATGACCACACCACAACATACTTTTCAGAGGAGTTTGCAACAATGATGGAATAGTATTTTTCAGTATGTACCGCTCTGGTGGGTTCGACCTCCTCACTTTCATCTCTTTTTGTTCGTTTGTCCTTCCCATCCTAGATGTTAATTAGGGAGTTTAATTCTCTAATTTGTAATTCACACGAGTAATTACAACATGTTTTACACAACCTAAAGAGTAAATACAGAGTCTTACCTCCACGGGCTTAGTCTTTTTTTATCTCTGCTTACAATCGAGCGTAATATTCTCGGATTGCATGGAAGAAACGAAATCCCTAAAATCTCGGAGGAATGTATCAATTTTTTGCTAATAAAGGGAATGGGAATGAATCCGTTACCTTGGTTTGAATTTCTGAGAAATTGTACAGTATTCGCGTAGAAGGAGAATCGATGGAGGATGTGAGGTGAGCAAGAGTCTCTACAGCGCGGCGGAAGAAGGTCGTCGGCACGGCGGATGTGGGTCGTCGGCGCGATGCGAGAGGTAGGGATTGGTATACACTCTGTGTTGGGGGTGGAAAATGGTGGGAAATGGAGGATTAAGTCTTTCAAGGTTTTCGAGGGAGAGAGATGAAGATGGATCGACGGGGGGTGACGCAATGCGTGGTGACGTTCTGGTGGGAGGGTGGGCGGTGATTTGACAGGTCATAATGGCAGCATTTAAGGTCCTTTTTTTGTTAGTTGTTTCATGATCAATTTTGTACAACATTTACTAAGTTGTTTTCTAAGGTTTCAGGTCGTATATCCTTTGATTGAGGGACTGTGTTTTCCAATTAACATAGTCCCGAAGGTGTTTCTCTCTACTGGGGGAGGTTGAGCGTTGTATTCCTCCCCAATAAAGGTACCGACTCCTTTTTCCGGGAAACAATTTTTTTCCAGTAGTAACAATATGATCCAACTTTTTCTAGATTTTGAAACTAGGTTTTGTTTCTTTAATTTTTGAATTTCAAGCTTCCTAAAATTTCCCCAACTTATTTTTAGGGGTGTATTTTATCTCTCATAAAATCTTATTTTAATTTTTAACGTTAGGAACACGTTTGTTGGGGGGCATTTGTGTCTTTTATAAATAGGATTTTATTAATTAGTAAAACGTTTAGCCATCTATTTAATTTATAAACTTTTGTAGTCATTTTTCAAGCCACCTATTTATTTTTAGCCATTTTTATTGTTGCCCCTTTTTTATTTTGTATCTAATAGAATTTTGAATTAAAAAAAAAACACACAGTTTATTAGGTCACAAATCTATTAAACATTAAATTGAAAACTTGGAAACTTACTAGATACAAAATTGAAAGTTTAAAGGACAATGGCATGTTTAAAAAAAAAATCTTGGAAAAAAAAACGAAAAAGAAGAAAAAGAAAAGAAAATATAAAGGCAGACACGTGCAGGGCTTGAACTTGAGAATGGGAGGTACGCAGGAAGAGCTTAAGCCAAAACAACATTTCATCAACGTGTTACTTGGCTCCAATTTCTATTATAAATATAATAAACATAGCCCCCCGAACCCATGCTACCTCCGCCACTGTGAAGGATAGGGTTTGGAAAGTTCTGCAGGGGTGGAAAGAAAAACTCTTCTCTATGGGAGGAAAAGAAGTCCTTATTAAGGCAGTGACCCAAGCTATTCCCAACTACACCATGAGCTGCTTCAAGCTCCCCAAGACTATATGTAATGATATTAATAGGATGTGCTTCAGATTCTGGTGGGCCTCAATCGAGGAGAAGAATAAAGTTCATTGGATGAGTTGGAAAAGACTATGCATCAGCAAGGATAGGGGCATGGGCTTTAGGGATATAAAATTATTTAATCAAGTCATGCTTGCATCCTGTGGGGAAGATACCTATTCAAATTAGGCATGAGATGGAGAGTAGGAAATGGGAATCACATCCATATAGCCAAAGTCCCTTGGTTATGGAGAAATGGCTGCAAAAGGCCTTTGGTGGTGGAGGAAGAACTCAAAGAGTGTTATGTGGCGGAGCTCATTCATGAAGACGGAAAATGAAAGGAAGAGAAGATTAGAAGGAAGTTTATCCCAGCTGACGCAGAGGCTATTATCAACACTCCTTTAGGAAGGAATAACTCAAAAGATAATATTATTTGGGAACCTGATTCGAAGGGAAATTTCTTTGTTAAGAGTGTCTATTTCCGAGCCCAAAACTTATCAACAACCAAAGAAGTGTCTCCGTTAGAGCTCTAGAACTCAGAGGCAATGTGGAAAGACCTCTGGATTATAGAGATTAATTATGTGCTTGAAGAGCAATCCAAAATATCCTTCCGTCCCAAACCAATATTATAGCCAAAGGAATCGACATTAATCCATTGTGTTTTCTTTGCAGGTCCAAGGAGGAATCAGTGGTGCACATTATTTGGGATTGTAAAGTCTTCAGACAGGTGTGGATTATATTTCTCCCTGGCTTATTGTAGATTTTTTACTTTTTAAGGGAAGATTGGGAGGCGGTGGATAAATGGATAAGGTTTGCAGATTTTTTTGAAGAAGAAGATCAAAAGAAGGCGATTAATATTGTAACAAACATTTGGAACCACATAAATTTGGTCAAATTGAAAAGCACAAAACCAGATCCGATCCCAACCTAATTTGCAGTGCAGTTGAGGCAAGAATTGAAGAATCTGGATACCTGAACAACAACAACATAATTTCCCCAAGATTTGAGAGCCTTTTGAGTCATAGTTGGACCCCTCCCCACGACAAAGCTGGAAAATCAACACTGATGCAGCTTGGGCAGAAGACAAAGGAACAGGGGGAATTGGATGGATTGCTCGTGACTTAAGCGAATCTTTTATCTGTGTTGGATTCAAGAAATTTGATATGAATTGGCCGATCAAATGCCTGGAGATGAAAACGATCATGGAGAGTTTGAAAAGCTTACTTGAAAGAATCAGTAGCCCTTTCTCGTGGATCATCATCGAATCAGACTCAATTGAAGTCGTTGCAATCCTCAACCATGAATCTGAAGACCTTTCAGAGATCAGGTCACTGGCAAATGAAGCGGAGTTTTAGCATGTATGGCTTATTCCCATTATTGCGTGGGTTTGTCTAATAACGTCTTTTTGGCTTCTTCCAATTCAGAAGTAGGATTCTTTTGTTTGGGTGATATGCTCCCATGGTTAAACTCTTCTTTATTTATGAATGGTAGGTGTATGGTTTGTAGTTGATTTAATGAAGCATTATTTTTTATAAAAAAAAATAAATTTCTAAATTATTTGGAGAAAAGGTAGTGTTCTCCTTTTGGTATTTTCGAATTCTATAAATACATGAAAATCTCCTAAAATGGATTTACTTTTTAAAATAAAAATTAATTTTTTGGGGAATGAGTAGTGTTCTCTTTTTAGGGTTTTAATCCTAGAAATACATGAAATCTCCCTAAAATTTTCAATGACGGATTATTGGAAAATACTTTTTTTTATAAGATTCTTGGGTGAGGAATTTATTTTGATATTTCAAAATAAATTCCAAGACTTTTCTAATGGCATTGAGCCACTCATAATTATTAATTCTTATTTTTATTATAAAATGTGGATTAATAAATTTAGGACATTTAAAATAAAACACAAAAAACATTTTCTTTCAACCAAAAAATAAAAGGATAACTTTAAAATAAAATGTAGTGACCGTTTTTTTAAAAATTGGATGTTGTAGGGGTGCTAATACCTCCCGTACACTCAATCGACTTCTGAACTTATTTTTGGTTTTCTAAGACCGGTTTTTATTTAAAATGGGTGACCAATCACACCCCATAAATGATTGGTGGCGACTCCAAACCTTTCCTCTAAAAAAAGACCCTCAAGAAAGGACGTTGGTTGCTCTGTGTTGCGATGAAGTTGAGACACAACAGATTCACGAAGAAAACAGACTAGACACGTCGAGAAGAGACGAAAAAAGAGAAAGGGGTAGGTTTTAACTTACCTACCTATCTTGACACAATGTGCGTCCAAATAAAAATAAACATGTGTCGAAAAAGTCCAAACACATGCTTTCACTAGCGACGAGATAAATATAGATAATCCCGATGCTTGTTATTGTATTGGGATATGTATTTTATGACTCTATTTTGACAAAATTAGACGCGTCAGGAAAAATATCATAGTAAAAACAAAAAATTCTTGTAAGAAAAAAAACAGCATGCGACAACAACGACAACGATCAGCGAAAAACAACCATGGATGGGAGGATGGAGAAAGATGGGAAGAGTGGAGAGAAAGAAGATAGATAAAAAAAAATGATAAGAATGTAAAAAAATATATTATTTTAATAAATAAAATAAAAAGCCATGTGAGCTTCTGTTTGATAATTAATAGAAAAACTTATTGATCGACCGAAGTGCGGGTAAATAAAAACCTCAGTGGTAAAACTATGGGTTATTATTGTTATAGGCAATTTTGGACCACCCCGATGTACAAGGAGCTGACGAGGACAACCGAGGAGAAATCGGACTGGGAGATGGACCCAAGAGGCGAAACCGGCAAGTGGGATGGGCCAAGACCGAAGGGGTCGGGCTCTTGGCCCGACCCCCTACTCGGCCGAGGCCGAGCCTCATGGACGCTAGCGCGGGCCGAGCCCGTCCGGCTCCGTTTGGTCCTTATCGCCTCTGGCCGCCCTGGTTTCGCCTGGTTTGTCCCGAAGTGCCTCCGAATTCCTAAAAACCCTAGGAGCATGAGCATGTATTTATACCCCTCTTCGCCACTGAAGAAGGGGACCCGAATTCTATCCCTAAACTCTACTCTCTATTTTCTACTTTCTCCTCTTGCTCTTACTTTCTTGCTTCCCACAGTTCTGTTTGCTGACTTAAGCATCGGAGCCGGTGTGGCAAGCACCACACCGGTGTGCAGGTTTACCGTCTTGTAG

mRNA sequence

ATGCCTTCTCAGACGGGGCATGGGGAAAATAAGGTGTTCCGAAAGTATTCGCGTAGAAGGAGAATCGATGGAGGATGTGAGGTGAGCAAGAGTCTCTACAGCGCGGCGGAAGAAGGTCGTCGGCACGGCGGATGTGGGTCGTCGGCGCGATGCGAGAGTCCCGAAGGTGTTTCTCTCTACTGGGGGAGGTTGAGCGTTGTATTCCTCCCCAATAAAGCCCCCCGAACCCATGCTACCTCCGCCACTGTGAAGGATAGGGTTTGGAAAGTTCTGCAGGGGTGGAAAGAAAAACTCTTCTCTATGGGAGGAAAAGAAGTCCTTATTAAGGCAGTGACCCAAGCTATTCCCAACTACACCATGAGCTGCTTCAAGCTCCCCAAGACTATATGTAATGATATTAATAGGATGTGCTTCAGATTCTGGTCCAAGGAGGAATCAGTGGTGCACATTATTTGGGATTGTAAAGTCTTCAGACAGTTGGACCCCTCCCCACGACAAAGCTGGAAAATCAACACTGATGCAGCTTGGGCAGAAGACAAAGGAACAGGGGGAATTGGATGGATTGCTCGTGACTTAAGCGAATCTTTTATCTGTGTTGGATTCAAGAAATTTGATATGAATTGGCCGATCAAATGCCTGGAGATGAAAACGATCATGGAGAGTTTGAAAAGCTTACTTGAAAGAATCAGTAGCCCTTTCTCGTGGATCATCATCGAATCAGACTCAATTGAAGTCGTTGCAATCCTCAACCATGAATCTGAAGACCTTTCAGAGATCAGGCAATTTTGGACCACCCCGATGTACAAGGAGCTGACGAGGACAACCGAGGAGAAATCGGACTGGGAGATGGACCCAAGAGGCGAAACCGGCAAGTGGGATGGGCCAAGACCGAAGGGGTCGGGCTCTTGGCCCGACCCCCTACTCGGCCGAGGCCGAGCCTCATGGACGCTAGCGCGGGCCGAGCCCGTCCGGCTCCGTTTGGTCCTTATCGCCTCTGGCCGCCCTGGTTTCGCCTGGTTTGTCCCGAAGTGCCTCCGAATTCCTAAAAACCCTAGGAGCATGAGCATGTATTTATACCCCTCTTCGCCACTGAAGAAGGGGACCCGAATTCTATCCCTAAACTCTACTCTCTATTTTCTACTTTCTCCTCTTGCTCTTACTTTCTTGCTTCCCACAGTTCTGTTTGCTGACTTAAGCATCGGAGCCGGTGTGGCAAGCACCACACCGGTGTGCAGGTTTACCGTCTTGTAG

Coding sequence (CDS)

ATGCCTTCTCAGACGGGGCATGGGGAAAATAAGGTGTTCCGAAAGTATTCGCGTAGAAGGAGAATCGATGGAGGATGTGAGGTGAGCAAGAGTCTCTACAGCGCGGCGGAAGAAGGTCGTCGGCACGGCGGATGTGGGTCGTCGGCGCGATGCGAGAGTCCCGAAGGTGTTTCTCTCTACTGGGGGAGGTTGAGCGTTGTATTCCTCCCCAATAAAGCCCCCCGAACCCATGCTACCTCCGCCACTGTGAAGGATAGGGTTTGGAAAGTTCTGCAGGGGTGGAAAGAAAAACTCTTCTCTATGGGAGGAAAAGAAGTCCTTATTAAGGCAGTGACCCAAGCTATTCCCAACTACACCATGAGCTGCTTCAAGCTCCCCAAGACTATATGTAATGATATTAATAGGATGTGCTTCAGATTCTGGTCCAAGGAGGAATCAGTGGTGCACATTATTTGGGATTGTAAAGTCTTCAGACAGTTGGACCCCTCCCCACGACAAAGCTGGAAAATCAACACTGATGCAGCTTGGGCAGAAGACAAAGGAACAGGGGGAATTGGATGGATTGCTCGTGACTTAAGCGAATCTTTTATCTGTGTTGGATTCAAGAAATTTGATATGAATTGGCCGATCAAATGCCTGGAGATGAAAACGATCATGGAGAGTTTGAAAAGCTTACTTGAAAGAATCAGTAGCCCTTTCTCGTGGATCATCATCGAATCAGACTCAATTGAAGTCGTTGCAATCCTCAACCATGAATCTGAAGACCTTTCAGAGATCAGGCAATTTTGGACCACCCCGATGTACAAGGAGCTGACGAGGACAACCGAGGAGAAATCGGACTGGGAGATGGACCCAAGAGGCGAAACCGGCAAGTGGGATGGGCCAAGACCGAAGGGGTCGGGCTCTTGGCCCGACCCCCTACTCGGCCGAGGCCGAGCCTCATGGACGCTAGCGCGGGCCGAGCCCGTCCGGCTCCGTTTGGTCCTTATCGCCTCTGGCCGCCCTGGTTTCGCCTGGTTTGTCCCGAAGTGCCTCCGAATTCCTAAAAACCCTAGGAGCATGAGCATGTATTTATACCCCTCTTCGCCACTGAAGAAGGGGACCCGAATTCTATCCCTAAACTCTACTCTCTATTTTCTACTTTCTCCTCTTGCTCTTACTTTCTTGCTTCCCACAGTTCTGTTTGCTGACTTAAGCATCGGAGCCGGTGTGGCAAGCACCACACCGGTGTGCAGGTTTACCGTCTTGTAG

Protein sequence

MPSQTGHGENKVFRKYSRRRRIDGGCEVSKSLYSAAEEGRRHGGCGSSARCESPEGVSLYWGRLSVVFLPNKAPRTHATSATVKDRVWKVLQGWKEKLFSMGGKEVLIKAVTQAIPNYTMSCFKLPKTICNDINRMCFRFWSKEESVVHIIWDCKVFRQLDPSPRQSWKINTDAAWAEDKGTGGIGWIARDLSESFICVGFKKFDMNWPIKCLEMKTIMESLKSLLERISSPFSWIIIESDSIEVVAILNHESEDLSEIRQFWTTPMYKELTRTTEEKSDWEMDPRGETGKWDGPRPKGSGSWPDPLLGRGRASWTLARAEPVRLRLVLIASGRPGFAWFVPKCLRIPKNPRSMSMYLYPSSPLKKGTRILSLNSTLYFLLSPLALTFLLPTVLFADLSIGAGVASTTPVCRFTVL

Homology

[Close]

BLAST of Lag0041102 vs. NCBI nr
Match: XP_022155286.1 (uncharacterized protein LOC111022423 [Momordica charantia])

HSP 1 Score: 105.9 bits (263), Expect = 8.5e-19
Identity = 65/128 (50.78%), Postives = 80/128 (62.50%), Query Frame = 0


Query: 69  LPNKAPRTHATSATVKDRVWKVLQGWKEKLFSMGGKEVLIKAVTQAIPNYTMSCFKLPKT 128
           L NK+ R+   SA V DRVWK LQGWK KLFSMGGKEVLIK V QAIPNYT+SCFKLP +
Sbjct: 421 LVNKS-RSEIFSAIV-DRVWKKLQGWKGKLFSMGGKEVLIKTVAQAIPNYTLSCFKLPVS 480

Query: 129 ICNDINRMCFRFW---SKEESVVHIIWDCKVFRQLDPSPRQSWKINTDAAWAEDKGTGGI 188
           ICN+++++  RFW   S E+  +H  W             QSWK+         K  GG+
Sbjct: 481 ICNELHQIYNRFWWGSSSEDRKIH--W-------------QSWKL-----LCIRKDLGGM 524

Query: 189 GWIARDLS 194
           G+  RD+S
Sbjct: 541 GF--RDIS 524

[Close]

BLAST of Lag0041102 vs. NCBI nr
Match: XP_022150918.1 (uncharacterized protein LOC111018954 [Momordica charantia])

HSP 1 Score: 101.3 bits (251), Expect = 2.1e-17
Identity = 51/96 (53.12%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 63  RLSVVFLPNKAPRTHATSAT-VKDRVWKVLQGWKEKLFSMGGKEVLIKAVTQAIPNYTMS 122
           +L  + LP   PR        +KDRVWK LQGWK KLFS+GGKEVLIKAV QAIP YTMS
Sbjct: 540 QLQYLGLPTFMPRNRRMHFNYIKDRVWKHLQGWKAKLFSIGGKEVLIKAVAQAIPCYTMS 599

Query: 123 CFKLPKTICNDINRMCFRFW---SKEESVVH-IIWD 154
           CF+LPK +  + + +  RFW   SKE+  +H + W+
Sbjct: 600 CFRLPKRLIREFHHITARFWWGSSKEDKKIHWVAWN 635

[Close]

BLAST of Lag0041102 vs. NCBI nr
Match: XP_018821989.1 (uncharacterized protein LOC108992010 [Juglans regia] >KAF5454504.1 hypothetical protein F2P56_024162 [Juglans regia])

HSP 1 Score: 97.4 bits (241), Expect = 3.0e-16
Identity = 43/72 (59.72%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 83  VKDRVWKVLQGWKEKLFSMGGKEVLIKAVTQAIPNYTMSCFKLPKTICNDINRMCFRFW- 142
           +K RVW+ LQGWKEK+ S GGKEVLIKAV QAIP Y+MSCFKLP ++CN++ +M  +FW 
Sbjct: 224 IKHRVWRKLQGWKEKVLSAGGKEVLIKAVAQAIPTYSMSCFKLPSSLCNELEQMMAKFWW 283

Query: 143 --SKEESVVHII 152
               EE  +H I
Sbjct: 284 GQKNEEKKIHWI 295

[Close]

BLAST of Lag0041102 vs. NCBI nr
Match: BAT06703.1 (Os08g0561250, partial [Oryza sativa Japonica Group])

HSP 1 Score: 96.7 bits (239), Expect = 5.1e-16
Identity = 51/114 (44.74%), Postives = 67/114 (58.77%), Query Frame = 0


Query: 44  GCGSSARCESPEGVSLYWGRLSVVFLPNKAPRTHATSATVKDRVWKVLQGWKEKLFSMGG 103
           G  S AR E   G+ +Y GR               T + +KDRVWK LQGWKE+L S  G
Sbjct: 19  GIQSEARNEKYLGLPIYMGR-----------SRSQTFSYLKDRVWKRLQGWKERLLSKAG 78

Query: 104 KEVLIKAVTQAIPNYTMSCFKLPKTICNDINRMCFRFW---SKEESVVH-IIWD 154
           KE+LIK+V Q+IP Y MSCF L KT+CN++  +  RFW    + E+ VH + W+
Sbjct: 79  KEILIKSVVQSIPTYAMSCFDLTKTLCNELGSLVCRFWWAQQENENKVHWVSWE 121

[Close]

BLAST of Lag0041102 vs. NCBI nr
Match: KAB8109613.1 (hypothetical protein EE612_045933, partial [Oryza sativa])

HSP 1 Score: 96.7 bits (239), Expect = 5.1e-16
Identity = 51/114 (44.74%), Postives = 67/114 (58.77%), Query Frame = 0


Query: 44  GCGSSARCESPEGVSLYWGRLSVVFLPNKAPRTHATSATVKDRVWKVLQGWKEKLFSMGG 103
           G  S AR E   G+ +Y GR               T + +KDRVWK LQGWKE+L S  G
Sbjct: 19  GIQSEARNEKYLGLPIYMGR-----------SRSQTFSYLKDRVWKRLQGWKERLLSKAG 78

Query: 104 KEVLIKAVTQAIPNYTMSCFKLPKTICNDINRMCFRFW---SKEESVVH-IIWD 154
           KE+LIK+V Q+IP Y MSCF L KT+CN++  +  RFW    + E+ VH + W+
Sbjct: 79  KEILIKSVVQSIPTYAMSCFDLTKTLCNELGSLVCRFWWAQQENENKVHWVSWE 121

[Close]

BLAST of Lag0041102 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.2e-04
Identity = 32/113 (28.32%), Postives = 58/113 (51.33%), Query Frame = 0


Query: 79  TSATVKDRVWKVLQGWKEKLFSMGGKEVLIKAVTQAIPNYTMSCFKLPKTICNDINRMCF 138
           T   + +RV   + GW+EK  S  G+  L KAV  ++P ++MS   LP++I N ++++  
Sbjct: 12  TFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSR 71

Query: 139 RF-W--SKEESVVHIIWDCKVFRQLDPSPRQSWKINTDAAWAEDKG-TGGIGW 188
            F W  + E+   H++   KV      SP++   +   AA + ++     +GW
Sbjct: 72  TFLWGSTAEKKKQHLVKWSKVC-----SPKKEGGLGVRAAKSMNRALISKVGW 119

[Close]

BLAST of Lag0041102 vs. ExPASy TrEMBL
Match: A0A6J1DRA0 (uncharacterized protein LOC111022423 OS=Momordica charantia OX=3673 GN=LOC111022423 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.1e-19
Identity = 65/128 (50.78%), Postives = 80/128 (62.50%), Query Frame = 0


Query: 69  LPNKAPRTHATSATVKDRVWKVLQGWKEKLFSMGGKEVLIKAVTQAIPNYTMSCFKLPKT 128
           L NK+ R+   SA V DRVWK LQGWK KLFSMGGKEVLIK V QAIPNYT+SCFKLP +
Sbjct: 421 LVNKS-RSEIFSAIV-DRVWKKLQGWKGKLFSMGGKEVLIKTVAQAIPNYTLSCFKLPVS 480

Query: 129 ICNDINRMCFRFW---SKEESVVHIIWDCKVFRQLDPSPRQSWKINTDAAWAEDKGTGGI 188
           ICN+++++  RFW   S E+  +H  W             QSWK+         K  GG+
Sbjct: 481 ICNELHQIYNRFWWGSSSEDRKIH--W-------------QSWKL-----LCIRKDLGGM 524

Query: 189 GWIARDLS 194
           G+  RD+S
Sbjct: 541 GF--RDIS 524

[Close]

BLAST of Lag0041102 vs. ExPASy TrEMBL
Match: A0A2N9J7Z2 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61378 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.7e-18
Identity = 70/224 (31.25%), Postives = 101/224 (45.09%), Query Frame = 0


Query: 69   LPNKAPRTHATSAT-VKDRVWKVLQGWKEKLFSMGGKEVLIKAVTQAIPNYTMSCFKLPK 128
            LP+   R  A S T +K+RVW  L+GWKEKL S   +EVLIKAV QAIP Y+MSCF+LP 
Sbjct: 947  LPSLIGRGRAESFTQIKERVWHKLKGWKEKLLSQARREVLIKAVAQAIPAYSMSCFRLPT 1006

Query: 129  TICNDINRMCFRFW----SKEESVVHIIW---------------DCKVFRQL-------- 188
             +C DI  M  RFW      +  +  + W               D + F +         
Sbjct: 1007 KLCQDIEAMIRRFWWSNNPDQRKINWVRWKKLCEPKKMGGMGFRDLQKFNEALLAKQEFV 1066

Query: 189  -------DPSPRQSWKINTDAAWAEDKGTGGIGWIARDLSESFICVGFKKFDMNWPIKCL 248
                    P     +K N D A  ++    GIG + RD     +    +K      ++C+
Sbjct: 1067 PELGIKWQPPRHLGFKANYDGAVFQESNEAGIGVVVRDREGKVMASLVQKVHHPQSVECI 1126

Query: 249  EMKTIMESLKSLLERISSPFSWIIIESDSIEVVAILNHESEDLS 258
            E     +++K + E      + +  E DS  +VA LN+ S  L+
Sbjct: 1127 EAWAAKKAVKFVTE---IGITEVEFEGDSTTIVAALNNHSPVLT 1167

[Close]

BLAST of Lag0041102 vs. ExPASy TrEMBL
Match: A0A6J1DAR4 (uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018954 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.0e-17
Identity = 51/96 (53.12%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 63  RLSVVFLPNKAPRTHATSAT-VKDRVWKVLQGWKEKLFSMGGKEVLIKAVTQAIPNYTMS 122
           +L  + LP   PR        +KDRVWK LQGWK KLFS+GGKEVLIKAV QAIP YTMS
Sbjct: 540 QLQYLGLPTFMPRNRRMHFNYIKDRVWKHLQGWKAKLFSIGGKEVLIKAVAQAIPCYTMS 599

Query: 123 CFKLPKTICNDINRMCFRFW---SKEESVVH-IIWD 154
           CF+LPK +  + + +  RFW   SKE+  +H + W+
Sbjct: 600 CFRLPKRLIREFHHITARFWWGSSKEDKKIHWVAWN 635

[Close]

BLAST of Lag0041102 vs. ExPASy TrEMBL
Match: A0A2I4ERH4 (uncharacterized protein LOC108992010 OS=Juglans regia OX=51240 GN=LOC108992010 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.5e-16
Identity = 43/72 (59.72%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 83  VKDRVWKVLQGWKEKLFSMGGKEVLIKAVTQAIPNYTMSCFKLPKTICNDINRMCFRFW- 142
           +K RVW+ LQGWKEK+ S GGKEVLIKAV QAIP Y+MSCFKLP ++CN++ +M  +FW 
Sbjct: 224 IKHRVWRKLQGWKEKVLSAGGKEVLIKAVAQAIPTYSMSCFKLPSSLCNELEQMMAKFWW 283

Query: 143 --SKEESVVHII 152
               EE  +H I
Sbjct: 284 GQKNEEKKIHWI 295

[Close]

BLAST of Lag0041102 vs. ExPASy TrEMBL
Match: A0A0P0XJF7 (Os08g0561250 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0561250 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.5e-16
Identity = 51/114 (44.74%), Postives = 67/114 (58.77%), Query Frame = 0


Query: 44  GCGSSARCESPEGVSLYWGRLSVVFLPNKAPRTHATSATVKDRVWKVLQGWKEKLFSMGG 103
           G  S AR E   G+ +Y GR               T + +KDRVWK LQGWKE+L S  G
Sbjct: 19  GIQSEARNEKYLGLPIYMGR-----------SRSQTFSYLKDRVWKRLQGWKERLLSKAG 78

Query: 104 KEVLIKAVTQAIPNYTMSCFKLPKTICNDINRMCFRFW---SKEESVVH-IIWD 154
           KE+LIK+V Q+IP Y MSCF L KT+CN++  +  RFW    + E+ VH + W+
Sbjct: 79  KEILIKSVVQSIPTYAMSCFDLTKTLCNELGSLVCRFWWAQQENENKVHWVSWE 121

[Close]

BLAST of Lag0041102 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 45.4 bits (106), Expect = 1.3e-04
Identity = 27/91 (29.67%), Postives = 45/91 (49.45%), Query Frame = 0


Query: 162 PSPRQSWKINTDAAWAEDKGTGGIGWIARDLSESFICVGFKKFDMNWPIKCLEMKTIMES 221
           P P Q  K NTDA W  D    GIGW+ R+       +G +       +   E++ +  +
Sbjct: 422 PPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMRWA 481

Query: 222 LKSLLERISSPFSWIIIESDSIEVVAILNHE 253
           + SL       ++++I ESDS  ++ ILN++
Sbjct: 482 VLSLSR---FQYNYVIFESDSQVLIEILNND 509

HSP 2 Score: 40.4 bits (93), Expect = 4.1e-03
Identity = 17/35 (48.57%), Postives = 24/35 (68.57%), Query Frame = 0


Query: 114 AIPNYTMSCFKLPKTICNDINRMCFRFW--SKEES 147
           A+P YTM+CF LPKT+C  I  +   FW  +K+E+
Sbjct: 2   ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEA 36

The following BLAST results are available for this feature:

BLAST of Lag0041102 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155286.1	8.5e-19	50.78	uncharacterized protein LOC111022423 [Momordica charantia]	[more]
XP_022150918.1	2.1e-17	53.13	uncharacterized protein LOC111018954 [Momordica charantia]	[more]
XP_018821989.1	3.0e-16	59.72	uncharacterized protein LOC108992010 [Juglans regia] >KAF5454504.1 hypothetical ...	[more]
BAT06703.1	5.1e-16	44.74	Os08g0561250, partial [Oryza sativa Japonica Group]	[more]
KAB8109613.1	5.1e-16	44.74	hypothetical protein EE612_045933, partial [Oryza sativa]	[more]

BLAST of Lag0041102 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C2F6	1.2e-04	28.32	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]

BLAST of Lag0041102 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DRA0	4.1e-19	50.78	uncharacterized protein LOC111022423 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A2N9J7Z2	7.7e-18	31.25	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]
A0A6J1DAR4	1.0e-17	53.13	uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A2I4ERH4	1.5e-16	59.72	uncharacterized protein LOC108992010 OS=Juglans regia OX=51240 GN=LOC108992010 P...	[more]
A0A0P0XJF7	2.5e-16	44.74	Os08g0561250 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os08...	[more]

BLAST of Lag0041102 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29090.1	1.3e-04	29.67	Ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 171..262 e-value: 3.7E-7 score: 30.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 274..293
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 274..303
None	No IPR available	PANTHER	PTHR33116:SF45	SUBFAMILY NOT NAMED	coord: 69..202
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 69..202
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 170..250 e-value: 4.596E-8 score: 49.2348

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0041102.1	Lag0041102.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity