Lag0041070 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0041070
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	heat shock 70 kDa protein 17-like
Location	chr13: 11573562 .. 11574854 (+)
RNA-Seq Expression	Lag0041070
Synteny	Lag0041070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGAACCATCAACGAAATCAAAAGAACCAAATCTTTATAAGCATGTTCCATCAAAACGAACACTGCAAAATGAGGATCGATTTTACTACTTCTGGATCTTATTAGGTATTTGACTTGCAATTTTATTAGATCTTATCATGTGTTTGGATTTTTATAAGAGAATAAGTTATACAATCTTGAGTATCCTTAATTTGTGGGGAGTGATATCCGTAATCTTGAGTATCCTTAATGGGTAATTCACTTGCACGGCTGAGTTCCATATCAGAGAAAAATGAAAAACAACATTGCTTCCTTTACACTCTCTCTACAGTCAAAAATTTATAAAGATAACACAATTCTTTATTCCACCTCTTCTAGTTCTAGGATCTAATTTGAAAAGAAAAAATGGTGAAAAAAGTGGTGTCAAATCAGAAAATGAAAGATTAAAAAGTTCCATATGAAGATCACAAAAAGGCCTGGAGATTTAACAAGGTTGTGTGGCCAATTGCCAACCATTTGGGAATACATATAATTGACACAAGCCAAGCCAGGCTCCCACGAGAGCAAGCTGCACAGAAACAACAAAGATCCAATATGGTTGAGTGTCCAGACCCAAGTTCCCAAACAATCTTTCTTTTTGTTAAAAACTAAGCAAACCCTTTTCTTTCGGAAGTGGGAAAATGGACTTTGAATGGCTTTTTTCTGAATCACTTTGTTGGCTATGAATTCAAATAGATCCCTAACAAAGATGAAACCGTGATAAGAAAATTAGAGGAAAACAAGAATAATTTCCAAAAACAAAAAACCAAAAACCAAATAGTAAATTTGTAAAAGTATTTAAGCATGTCTATTATACATCTAAATTTTCTTTCTCCCATATGTAAATTTGTAAGAAATGAACATATATCTACATAACACTTTCAATATATAACATGGATAAATACATTAATACTTGAAAAACCTAAACTGTAAACCCAATGCAACTAATTGAAGTGAACATTTACAACAATAAACACTCACTTGTACCCTCAAACTATGTATGCTTATAATGTGTTTTAACAATATATACATCATATAAATATCATAGATTTATTAATTATTTATAACAATGTTCACCAAAGCCTAAGATCGAGAAACCTGTGAATGAATCAGAGTCCATTAAAGAAGACGTGAAAAGCTCCAATTCGAAAACTGATGAGAGTTCACCTGAAGATGACCATTCGGCCAAGGATTCGGAGAAGCCAGCAACTGAAAATGCCAAGCTTGAGTCTGAATCCGAACCTGAATCGAACGAGCATGATGAGTTATGA

mRNA sequence

ATGAATGAACCATCAACGAAATCAAAAGAACCAAATCTTTATAAGCATGTTCCATCAAAACGAACACTGCAAAATGAGGATCGATTTTACTACTTCTGGATCTTATTAGAGTCCATTAAAGAAGACGTGAAAAGCTCCAATTCGAAAACTGATGAGAGTTCACCTGAAGATGACCATTCGGCCAAGGATTCGGAGAAGCCAGCAACTGAAAATGCCAAGCTTGAGTCTGAATCCGAACCTGAATCGAACGAGCATGATGAGTTATGA

Coding sequence (CDS)

ATGAATGAACCATCAACGAAATCAAAAGAACCAAATCTTTATAAGCATGTTCCATCAAAACGAACACTGCAAAATGAGGATCGATTTTACTACTTCTGGATCTTATTAGAGTCCATTAAAGAAGACGTGAAAAGCTCCAATTCGAAAACTGATGAGAGTTCACCTGAAGATGACCATTCGGCCAAGGATTCGGAGAAGCCAGCAACTGAAAATGCCAAGCTTGAGTCTGAATCCGAACCTGAATCGAACGAGCATGATGAGTTATGA

Protein sequence

MNEPSTKSKEPNLYKHVPSKRTLQNEDRFYYFWILLESIKEDVKSSNSKTDESSPEDDHSAKDSEKPATENAKLESESEPESNEHDEL

Homology

[Close]

BLAST of Lag0041070 vs. NCBI nr
Match: KAG6607998.1 (Heat shock 70 kDa protein 17, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.4 bits (176), Expect = 2.2e-09
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 37   ESIKEDVKSSNSKTDESSPEDDHSAKDSEKPATENAKLESESEPESNEHDEL 89
            +S KEDVK SNS TDESSPE D SAKDSEKPA+ENA+ ESES+PESNEHDEL
Sbjct: 1615 DSSKEDVKGSNSTTDESSPEGDQSAKDSEKPASENAESESESQPESNEHDEL 1666

[Close]

BLAST of Lag0041070 vs. NCBI nr
Match: KAG7037515.1 (Heat shock 70 kDa protein 17, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 72.4 bits (176), Expect = 2.2e-09
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 37  ESIKEDVKSSNSKTDESSPEDDHSAKDSEKPATENAKLESESEPESNEHDEL 89
           +S KEDVK SNS TDESSPE D SAKDSEKPA+ENA+ ESES+PESNEHDEL
Sbjct: 847 DSSKEDVKGSNSTTDESSPEGDQSAKDSEKPASENAESESESQPESNEHDEL 898

[Close]

BLAST of Lag0041070 vs. NCBI nr
Match: XP_023524930.1 (heat shock 70 kDa protein 17-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 67.8 bits (164), Expect = 5.4e-08
Identity = 40/52 (76.92%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 37  ESIKEDVKSSNSKTDESSPEDDHSAKDSEKPATENAKLESESEPESNEHDEL 89
           +S KED K SNS TDESSPE D SAKDSEKPA+ENA+ ESES+ ESNEHDEL
Sbjct: 847 DSSKEDTKGSNSTTDESSPEGDQSAKDSEKPASENAESESESQAESNEHDEL 898

[Close]

BLAST of Lag0041070 vs. NCBI nr
Match: XP_038897932.1 (heat shock 70 kDa protein 17 [Benincasa hispida])

HSP 1 Score: 67.0 bits (162), Expect = 9.2e-08
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 37  ESIKEDVKSSNSKTDESSPEDDHSAKDSEKPATENAKLESESEPESNEHDEL 89
           ES KE+VK+ NS TDESSP+ D SAKDSE PA+ENA+ ESES+PESNEHDEL
Sbjct: 847 ESSKEEVKNGNSSTDESSPQGDQSAKDSEIPASENAQSESESQPESNEHDEL 898

[Close]

BLAST of Lag0041070 vs. NCBI nr
Match: XP_022940051.1 (heat shock 70 kDa protein 17-like [Cucurbita moschata])

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-07
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 37  ESIKEDVKSSNSKTDESSPEDDHSAKDSEKPATENAKLESESE--PESNEHDEL 89
           +S KED KSSNS TDESSP+ D S+KDSEKPA+ENA+ ESESE  PESNEHDEL
Sbjct: 847 DSSKEDTKSSNSTTDESSPQGDQSSKDSEKPASENAESESESESQPESNEHDEL 900

The following BLAST results are available for this feature:

BLAST of Lag0041070 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607998.1	2.2e-09	80.77	Heat shock 70 kDa protein 17, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7037515.1	2.2e-09	80.77	Heat shock 70 kDa protein 17, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_023524930.1	5.4e-08	76.92	heat shock 70 kDa protein 17-like [Cucurbita pepo subsp. pepo]	[more]
XP_038897932.1	9.2e-08	75.00	heat shock 70 kDa protein 17 [Benincasa hispida]	[more]
XP_022940051.1	1.6e-07	75.93	heat shock 70 kDa protein 17-like [Cucurbita moschata]	[more]

BLAST of Lag0041070 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0041070.1	Lag0041070.1	mRNA