Lag0041046 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0041046
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr13: 11287472 .. 11288168 (+)
RNA-Seq ExpressionLag0041046
SyntenyLag0041046
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCGAAACGAAACCATCAACCGCCATCGACAACATTTGAAGATGGAGCGGAACGAAGCCGTCAACCGCCAACATTTGAAGATGGAGCGAGGTCGAAGCCGTCAACTGTCGACTTTGGAGATAAAGCAGAACGAGGTTGAAGATGAAGCGGAAGTGATCAACCCCTGATTCAGACGGAATTCAGGATGGTTTCTCGCCCTCACATCTTGCCTCAGGCAGTGATCAACCCCTAATTCAGGCGGAATTCAGGATGATCACTTGTCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGATCACTTATCCTTCACATCTTGCCTCAGACAGTGATCAACCCCTGATTCAAGTGGAATTCAGGATGGTCACTTGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGGTCACTTGTCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGGTCACTTGCCCTTCACATCTTGCCTCAGACAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGGTCACTTGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGGTTCAGGATGGTCACTTGCCCTTCACATCTTGCCTCAGGCAGTGA

mRNA sequence

ATGGAGCGAAACGAAACCATCAACCGCCATCGACAACATTTGAAGATGGAGCGGAACGAAGCCGTCAACCGCCAACATTTGAAGATGGAGCGAGGTCGAAGCCGTCAACTGTCGACTTTGGAGATAAAGCAGAACGAGGTTGAAGATGAAGCGGAAGCGGAATTCAGGATGATCACTTGTCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGATCACTTATCCTTCACATCTTGCCTCAGACAGTGATCAACCCCTGATTCAAGTGGAATTCAGGATGGTCACTTGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGGTCACTTGTCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGGTCACTTGCCCTTCACATCTTGCCTCAGACAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGGTCACTTGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGGTTCAGGATGGTCACTTGCCCTTCACATCTTGCCTCAGGCAGTGA

Coding sequence (CDS)

ATGGAGCGAAACGAAACCATCAACCGCCATCGACAACATTTGAAGATGGAGCGGAACGAAGCCGTCAACCGCCAACATTTGAAGATGGAGCGAGGTCGAAGCCGTCAACTGTCGACTTTGGAGATAAAGCAGAACGAGGTTGAAGATGAAGCGGAAGCGGAATTCAGGATGATCACTTGTCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGATCACTTATCCTTCACATCTTGCCTCAGACAGTGATCAACCCCTGATTCAAGTGGAATTCAGGATGGTCACTTGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGGTCACTTGTCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGGTCACTTGCCCTTCACATCTTGCCTCAGACAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGGTCACTTGCCCTTCACATCTTGCCTCAGGCAGTGATCAACCCCTGATTCAGGCGGAATTCAGGATGGTTCAGGATGGTCACTTGCCCTTCACATCTTGCCTCAGGCAGTGA

Protein sequence

MERNETINRHRQHLKMERNEAVNRQHLKMERGRSRQLSTLEIKQNEVEDEAEAEFRMITCPSHLASGSDQPLIQAEFRMITYPSHLASDSDQPLIQVEFRMVTCPSHLASGSDQPLIQAEFRMVTCPSHLASGSDQPLIQAEFRMVTCPSHLASDSDQPLIQAEFRMVTCPSHLASGSDQPLIQAEFRMVQDGHLPFTSCLRQ
Homology
BLAST of Lag0041046 vs. NCBI nr
Match: CAE1322405.1 (unnamed protein product [Sepia pharaonis])

HSP 1 Score: 85.9 bits (211), Expect = 4.4e-13
Identity = 51/129 (39.53%), Postives = 54/129 (41.86%), Query Frame = 0

Query: 58  ITC---PSHLASGSDQPLIQAEFRMITYPSHLASDSDQPLIQVEFRMVTCPSHLASGSDQ 117
           +TC   PSHL S S  P I         P+HL S S  P I         PSHL S SD 
Sbjct: 63  LTCYRLPSHLLSSSVSPAILFRLTCYPLPTHLLSLSVSPAILFRLTCYPLPSHLPSSSDS 122

Query: 118 PLIQAEFRMVTCPSHLASGSDQPLIQAEFRMVTCPSHLASDSDQPLIQAEFRMVTCPSHL 177
           P I         P+HL S SD P I         PSHL S S  P I         PSHL
Sbjct: 123 PAILFRLTCYPLPTHLLSSSDSPAIFFRLTCYPLPSHLLSSSVSPAILFRLTCYLLPSHL 182

Query: 178 ASGSDQPLI 184
            S SD P I
Sbjct: 183 LSYSDSPAI 191

BLAST of Lag0041046 vs. NCBI nr
Match: CAE1178059.1 (unnamed protein product [Sepia pharaonis])

HSP 1 Score: 72.4 bits (176), Expect = 5.1e-09
Identity = 45/129 (34.88%), Postives = 48/129 (37.21%), Query Frame = 0

Query: 58  ITC---PSHLASGSDQPLIQAEFRMITYPSHLASDSDQPLIQVEFRMVTCPSHLASGSDQ 117
           +TC   P+HL S S    I       + P HL S S  P I         P HL S SD 
Sbjct: 73  LTCSPLPTHLLSSSSSSAILFRLTCYSVPPHLLSSSASPAILFFLTCYPLPFHLLSSSDS 132

Query: 118 PLIQAEFRMVTCPSHLASGSDQPLIQAEFRMVTCPSHLASDSDQPLIQAEFRMVTCPSHL 177
           P I         P HL S    P I         PSHL S SD P I         PSHL
Sbjct: 133 PAILFLLTCYPLPPHLLSSFASPAILFRLTCYPLPSHLLSFSDSPAILFRLTCYPLPSHL 192

Query: 178 ASGSDQPLI 184
              S  P I
Sbjct: 193 LFSSASPAI 201

BLAST of Lag0041046 vs. NCBI nr
Match: CAE1298543.1 (unnamed protein product [Sepia pharaonis])

HSP 1 Score: 72.0 bits (175), Expect = 6.6e-09
Identity = 44/129 (34.11%), Postives = 47/129 (36.43%), Query Frame = 0

Query: 55  FRMITCPSHLASGSDQPLIQAEFRMITYPSHLASDSDQPLIQVEFRMVTCPSHLASGSDQ 114
           F     P HL S S  P I   F     P  L S S  P I         P+HL S S  
Sbjct: 438 FTCYPLPPHLLSSSTSPAILFRFTCYPLPPQLLSSSASPAILFRLTCYPLPTHLLSSSAS 497

Query: 115 PLIQAEFRMVTCPSHLASGSDQPLIQAEFRMVTCPSHLASDSDQPLIQAEFRMVTCPSHL 174
           P+I   F     P HL S S    I       + P HL S S  P I   F     P HL
Sbjct: 498 PVILFHFTCHPLPPHLLSSSTSYAILFHLTCNSLPPHLLSSSTSPAILFHFTCHPLPPHL 557

Query: 175 ASGSDQPLI 184
            S S  P I
Sbjct: 558 LSPSASPAI 566

BLAST of Lag0041046 vs. NCBI nr
Match: KAG7335348.1 (hypothetical protein KOW79_001944 [Hemibagrus wyckioides])

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-08
Identity = 31/138 (22.46%), Postives = 62/138 (44.93%), Query Frame = 0

Query: 57  MITCPSHLASGSDQPLIQAEFRMITYPSHLASDSDQPLIQVEFRMVTCPSHLASGSDQPL 116
           +++ P HL + S   L+ +   +IT    L + S   L+     ++TC  HL + S   L
Sbjct: 171 LLSSPHHLITSSPHHLLSSPHHLITSSPALITSSPHHLLSSPHHLITCSHHLITSSPHHL 230

Query: 117 IQAEFRMVTCPSHLASGSDQPLIQAEFRMVTCPSHLASDSDQPLIQAEFRMVTCPSHLAS 176
           + +   ++TC  HL + S   +  +   ++T    L + S   +  +   ++TC  HL +
Sbjct: 231 LSSPHHLITCSHHLITSSPALITSSPHHLITSSPALITSSPALITSSPHHLITCSHHLIT 290

Query: 177 GSDQPLIQAEFRMVQDGH 195
            S   L+ +   ++   H
Sbjct: 291 SSLDHLLSSPHHLITCSH 308

BLAST of Lag0041046 vs. NCBI nr
Match: XP_036790364.1 (proline-rich protein 36-like [Oncorhynchus mykiss])

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-04
Identity = 45/124 (36.29%), Postives = 58/124 (46.77%), Query Frame = 0

Query: 59  TCPSHLASGSDQPLIQAEFRMITYPSHLASDSDQPLIQVEFRMVTCPSHLASGSDQPLIQ 118
           T P +L + S QPL       IT P +L + S QPL  +     T PS+L + S QPL  
Sbjct: 51  TPPYNLYNPSLQPLQLLPTTSITPPYNLYNPSLQPLQLLPTTSTTPPSNLYNSSLQPLQL 110

Query: 119 AEFRMVTCPSHLASGSDQPLIQAEFRMVTCPSHLASDSDQPLIQAEFRMVTCPSHLASGS 178
                 T P +L + S QPL        T PS+L + S QPL        T P +L + S
Sbjct: 111 LPPTSTTPPYNLYNSSLQPLQPLPTTSTTPPSNLYNSSLQPLQLLPTTSTTPPYNLYNSS 170

Query: 179 DQPL 183
            QPL
Sbjct: 171 LQPL 174

BLAST of Lag0041046 vs. ExPASy TrEMBL
Match: A0A7S4AVG6 (Hypothetical protein OS=Pseudo-nitzschia australis OX=44445 GN=PAUS00366_LOCUS20215 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.6e-08
Identity = 40/110 (36.36%), Postives = 56/110 (50.91%), Query Frame = 0

Query: 83  PSHLA--SDSDQPLIQVEFRMVT--CPSHLASGSDQPLIQAEFRMVT--CPSHLASGSDQ 142
           PSH +  S  D PL++ EF  V+   PSH  +G    L++ EF  V+   PSH  +G   
Sbjct: 139 PSHYSHYSGGDSPLVRQEFHKVSTPSPSHFCTGGISFLVRQEFHNVSTPTPSHYCAGGSP 198

Query: 143 PLIQAEFRMVT--CPSHLASDSDQPLIQAEFRMVT--CPSHLASGSDQPL 183
           PL++ EF  V    PS+       PL++ EF  V+   PSH  +G   PL
Sbjct: 199 PLLRQEFHNVATPTPSYYCGGGGSPLVRPEFHKVSTPTPSHYCTGGGSPL 248

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CAE1322405.14.4e-1339.53unnamed protein product [Sepia pharaonis][more]
CAE1178059.15.1e-0934.88unnamed protein product [Sepia pharaonis][more]
CAE1298543.16.6e-0934.11unnamed protein product [Sepia pharaonis][more]
KAG7335348.11.5e-0822.46hypothetical protein KOW79_001944 [Hemibagrus wyckioides][more]
XP_036790364.11.3e-0436.29proline-rich protein 36-like [Oncorhynchus mykiss][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A7S4AVG64.6e-0836.36Hypothetical protein OS=Pseudo-nitzschia australis OX=44445 GN=PAUS00366_LOCUS20... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0041046.1Lag0041046.1mRNA