Lag0041021 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0041021
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr13: 10927833 .. 10932776 (+)
RNA-Seq Expression	Lag0041021
Synteny	Lag0041021

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGACCTTGACCTACCCTTCCATGGTCTTCTTGCTAGAGAACAGGAACACTGCAAGGCCAAGCATGGCCTTTGGAGTAAATCCAACATGCAATATTAATGGCAGCCTGGTTTCTGAACGAACTTCTCGTTTTAAATAATGTTGTTCTAAAGTTCGACATGATTCATGTGCTTGTGATTATATATCACCTACGACTGATCTAATAAACTTTTTTATCCCTAACAAATTTATTTTTAATGAGAAATTTCTTTTAAGTCAAATTTGTTAGAAATGTCAATAATATGAGCACATGCATGTGTGGGATTATTTAATGTGTTTCCTTCATTGCTATTTTGATTAAACTTAGAGAAATGATCTACTTAATTATGAAAATATTTATAGAGTATTTATAAATTGATCATGAGAAAAATATCTTGATACTACCATTAGTTTATTTTGATTAAGTTAGAAGTAAAAGTAACTCGTAATTAACTGACTAGTGGTCCCTTTCTTTTAATTTTGTGGTTGGTTACAAAAGAGTTACCATCCTTGACGTCAAATTAATTTTATTAAGGTTTTCTCTCATCTTCATCCGAGCGAGATTTGTTTCTTCTTATAAAAGAATGAGAAACTAAGAAGATAAAACATACCCACTATTAACAGCTTTCGACAATGAATTAGGAACTCAATAATTATAAGGGATTCTCAAATTGAATTCAAAATATAAGTGGAACTAAATAAAGAAAATGAATAATGGAAAAATAGATTTATTCTCAATTTGACATGTCATTTTGATTGTACTTGGACATATGAAATTGAACTTATCCATGGATAAAAACTAATTTGCCCATCAACAAAAATCTATTTCTTCAAAGTGACATGTTCAATAGAGTATGCCCATGTGTTAAAATATGTTGATATAACAATAGGTTGATAACAAAAAAATTTAGGACGTAATTGAGAATTCTCAAGATATTAAAGATAAAATTGAGAATTTTAGAAGATTAAAAACCAAATTAAAATTTATTAAAAGATTAATAGATGATCTGATATTTTTTGTTTTGATTTATCTATATCTATATCTATATGTTGTTATCAATACACCGCAAATACACGGGCCACAAGTAATAAAAACGGTAAGCATTTACCGAATATCGTATCCACAGAGAGTAGTAAATAACTTAGGTGATTCAAGCAACTGAACACTAAAATTACTAAAGACAAACATTATTTAGGAGCCCTATTCGCATCAAAAGACAAGGTTGCAGATTGAATAAAGAAGTGAAACAATAGAGGGAAAATGATCAAGCAACTTGCAATAAATTGGAGGAGATCAAGCTTAATAGAAAGGCAGGGACTTGAATTCCAAATATGATTAAACATTTTCTCTTATTACTAATTACTATGTCTGATCTAATTATAAATCTAGAACTTTCTTTAATTACATAGGTTCTCCTGTTGGTTTCCCCTAATTCTAATTAACTCATATTAACAACCTAAGTGTCCTAAGCGTGTCATTAAATGAGTTAATTAATAGAGCCCTGGTTCATTATAGATTTCTAAGTCTAACCAACCAATCTCGCTGTCACTACGAGTAGTTAAGTCTAGTTACATGAATTACGTTCTAACTTAGTTTCTCTCCGTCAAGTTTCCACCAAAGTAACTAAATCAATATAAATTTGGCCATAACTTATAAAGCATTACAACCATCCATACAAATAACCAGTATATCAGACAAGAGCAATCAGAGTAACAAATAATCACATTTCTTCATTGTCAAAACCCGAATTCCTGGAGTTTAGTTACACCATTGTCACTGTATGCACACAAAATTCCAGCATTGACATTTTAAATACAGTAAATGGACAGAAAAAAGGGAAAATGAATTAAACCGATGACGAATCCCTCACTTATGCCCTCAATCCACCACGATCTAAGCCTCGATTAGAATCCGAATAAAGCTCCCGATCCTCCCCAGTAATGCCCAAAAGCCCTCCCTAAATATCTCTCCCTCTAAACTCTCCTCTCAACCCTCCAAATGGTTGCTTGATGCAAAAACTCATAGCAAAACGCGACTTAAATAGTGCTTCAGGTTGCCCAGCGTCGATACGCTCTAGTCCTAGGGTCGTGACGTTGGACTTCGGGTAACTTGAGGCTCACACTCATCAGCGTCTCGAAATTGGCCTTCGGCTAGACCTCCCAGATGCGGTTTTGGATTGATTTGGGTTGATTTTCTTCTATTCTTGGTTTTGGGCTTCAATTCACAACACCAAAACTTCTTATCTTCAATTTATACATCAAATTAGGATCCAATTGCCTCCAATTTCTCCAAAATTGCTCCATTTGCTCTTGTGGGACTAATTAATTTGAAATTAACAAATTTAAGCAATTAAATACCAATTAATTAAGCAATTTAACTTAAATTAAGGAATAAAATGTTAGCATTTTTGTATCCTAAACACTATACTATATTAAAAGACAAGGATTACTAAAAAAACATTTTTAGACTAGAATACCCCTTAAAATTTTAGATAATTATATAATTAGTTTTCAAATTCAAGAATCAAAATTTGTAATTTAAGAAAAGGCTAAATTATAAAAATAAAAAAATAATAATAAAAAAATAAAAAAAAGACCTCTAAACTATGGGGTTTATTTAAAAAATGCCCCTAAACTTTAAAAAGTTTCAAAAATACCCCTGAACTTAAAAAAACAAATGTTTAAAAAATACATGTTGAAGGAGAAATTTTTGCCAATCACAAATTGCCACGTCATTAATATAAATTGGGCCCAAGCCAATCAGATTATGCCACGTGGCAATTGGGCCCAAGCCCAAGCCCATATGAGGTCCATCAAACTCTATAAATAGAGGAGGCCACCATTCATTCATGGGGGGATTCAGATTTGGAGACAGAGTCAGAGAACTCAGAGTCCAGAGCATTCTGCCAGAGTCCAGAGTCAGCAGGCCGATCATCCAAAAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAAGATCAACAAGCCAACTGATCGAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATTCGACAGATCATCAAGCCAATCGACCGATCAAGAAGATCAACAAGTCAACAGACCGATCATCCAAGAAGATCAACAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAATCAGCAGACCGATCATCAAACCGATCATCCGAGAAGATCAAGAAGTCAGCAGACCGATCATCCAAGAAGATCAACAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAGTTAGCAGACCGATCATCCAAGAAGATCAACAAGCCAACAGGCCGATCATCCGAGAAGATCAACAAGTCACAACAGGCCGATCCAAGAGATCATTAAGCCAGCAGGCCGATCATCCAAGAAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAACCTAGCAAGCCGATCATCCAAGAAGCTCAACAAACCAGCCCAAGAAGATCAAGAAGCTAGAGACCAAAGTTTATATATTTAAGAGAGAGAATCAGAGGATTAAAGTTAGAGATTGTACACCCACACGCATACAACATTAATACAATATATTATTTATTCCACGTGTCTCCATCCCCGAAGTTACGTGTGAACAAATTGGCCCGCCTAGTGGGATCATCTCTACCTCTCATCTCTCTCTCTTATCTCAAAAACACAAGTATAAACATGTCGTTCAAGACTTCTTCAATGGTCGCTGTCATGAACAAGTCATACATGGGTTCTACTGCCCATTGTTGCTTCAACGGACTGACGTTGCAAGAAGATAAAGCTTCTGTCGTTGCAGACCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTTTGTCAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGGGACTAGAACTATGGAAGAAAGAATGGTTGAGATGCAGGAGCACATCGACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGAGCAACTAAAGAGCCAAATTGAGAACCAACATATCACCGAATCAAGTCAAACCCATGTCGTAAAAAATCACGGCAAAGGAAATACTATAGTGCAAGATGATCAACCACAGTGTTCTGCTTCGATCGCTTCACTATCCATCCAACAGCTCCAAGATATGATCACAAACTGTATTAGAGCCCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTATTCCAAACCTTATACTAAGAGGATTGATAACTTGAGAACGCCAATCGGGTATCAGCCACCAAAATTTCAGCAGTTTGATGGAAAAGACAATCCTAAACAACATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGGTACTCGAGGGGACCTACTAGTCAAGCAGTTCGTTCGAACACTTAAAGGAAATGCTTTTGACTGGTACACTGATCTAGAACCTGAGTCATTAGACAGTTGGGAGGAACTCGAAAGAGAGATTTTGAATCGCTTCTACAGCACTAGAAGAACCGTTAGCATGTTCGAGCTCACCAACACTAAACAACGAAAAGGTGAACTCGTTGTTAACTATATAAATCGCTGGAGAGCCATGAGTCTAGATTGCAAAGATCGTCTCACTGAACTCTCTTCCGTCGAGATGTGCATTCAAGGCATGCACTGGGAACTCCTCTACATCCTTAAAGGTATAAACCTCGCACCTTTGAAGAACTAG

mRNA sequence

ATGTATGACCTTGACCTACCCTTCCATGGTCTTCTTGCTAGAGAACAGGAACACTGCAAGGCCAAGCATGGCCTTTGGAATTTGGAGACAGAGTCAGAGAACTCAGAGTCCAGAGCATTCTGCCAGAGTCCAGAGTCAGCAGGCCGATCATCCAAAAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAAGATCAACAAGCCAACTGATCGAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATTCGACAGATCATCAAGCCAATCGACCGATCAAGAAGATCAACAAGTCAACAGACCGATCATCCAAGAAGATCAACAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAATCAGCAGACCGATCATCAAACCGATCATCCGAGAAGATCAAGAAGTCAGCAGACCGATCATCCAAGAAGATCAACAAGCCAACAGGCCGATCATCCAAGAAGATCAACAATGACTGTCATGATGACTGGGACTAGAACTATGGAAGAAAGAATGGTTGAGATGCAGGAGCACATCGACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGAGCAACTAAAGAGCCAAATTGAGAACCAACATATCACCGAATCAAGTCAAACCCATGTCGTAAAAAATCACGGCAAAGGAAATACTATAGTGCAAGATGATCAACCACAGTGTTCTGCTTCGATCGCTTCACTATCCATCCAACAGCTCCAAGATATGATCACAAACTGTATTAGAGCCCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTATTCCAAACCTTATACTAAGAGGATTGATAACTTGAGAACGCCAATCGGGTATCAGCCACCAAAATTTCAGCAGTTTGATGGAAAAGACAATCCTAAACAACATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGGTACTCGAGGGGACCTACTAGTCAAGCAGTTCGTTCGAACACTTAAAGGAAATGCTTTTGACTGGTACACTGATCTAGAACCTGAGTCATTAGACAGTTGGGAGGAACTCGAAAGAGAGATTTTGAATCGCTTCTACAGCACTAGAAGAACCGTTAGCATGTTCGAGCTCACCAACACTAAACAACGAAAAGGTGAACTCGTTGTTAACTATATAAATCGCTGGAGAGCCATGAGTCTAGATTGCAAAGATCGTCTCACTGAACTCTCTTCCGTCGAGATGTGCATTCAAGGCATGCACTGGGAACTCCTCTACATCCTTAAAGGTATAAACCTCGCACCTTTGAAGAACTAG

Coding sequence (CDS)

ATGTATGACCTTGACCTACCCTTCCATGGTCTTCTTGCTAGAGAACAGGAACACTGCAAGGCCAAGCATGGCCTTTGGAATTTGGAGACAGAGTCAGAGAACTCAGAGTCCAGAGCATTCTGCCAGAGTCCAGAGTCAGCAGGCCGATCATCCAAAAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAAGATCAACAAGCCAACTGATCGAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATTCGACAGATCATCAAGCCAATCGACCGATCAAGAAGATCAACAAGTCAACAGACCGATCATCCAAGAAGATCAACAAGCCAACAGGCCGATCATCCAAGAAGATCAACAAATCAGCAGACCGATCATCAAACCGATCATCCGAGAAGATCAAGAAGTCAGCAGACCGATCATCCAAGAAGATCAACAAGCCAACAGGCCGATCATCCAAGAAGATCAACAATGACTGTCATGATGACTGGGACTAGAACTATGGAAGAAAGAATGGTTGAGATGCAGGAGCACATCGACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGAGCAACTAAAGAGCCAAATTGAGAACCAACATATCACCGAATCAAGTCAAACCCATGTCGTAAAAAATCACGGCAAAGGAAATACTATAGTGCAAGATGATCAACCACAGTGTTCTGCTTCGATCGCTTCACTATCCATCCAACAGCTCCAAGATATGATCACAAACTGTATTAGAGCCCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTATTCCAAACCTTATACTAAGAGGATTGATAACTTGAGAACGCCAATCGGGTATCAGCCACCAAAATTTCAGCAGTTTGATGGAAAAGACAATCCTAAACAACATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGGTACTCGAGGGGACCTACTAGTCAAGCAGTTCGTTCGAACACTTAAAGGAAATGCTTTTGACTGGTACACTGATCTAGAACCTGAGTCATTAGACAGTTGGGAGGAACTCGAAAGAGAGATTTTGAATCGCTTCTACAGCACTAGAAGAACCGTTAGCATGTTCGAGCTCACCAACACTAAACAACGAAAAGGTGAACTCGTTGTTAACTATATAAATCGCTGGAGAGCCATGAGTCTAGATTGCAAAGATCGTCTCACTGAACTCTCTTCCGTCGAGATGTGCATTCAAGGCATGCACTGGGAACTCCTCTACATCCTTAAAGGTATAAACCTCGCACCTTTGAAGAACTAG

Protein sequence

MYDLDLPFHGLLAREQEHCKAKHGLWNLETESENSESRAFCQSPESAGRSSKRINKLTSRSNRSSSQQADPRDQQANRPIKKINKSAGRSSKKINKPTDRTDHQANRPIQEIIKSAGRSSKRINKLTSRSNRSSSQQADPRDHQVSRPIIQEDQQANKPIRQIIKPIDRSRRSTSQQTDHPRRSTSQQADHPRRSTNQQTDHQTDHPRRSRSQQTDHPRRSTSQQADHPRRSTMTVMMTGTRTMEERMVEMQEHIDTLMKAIEEKDSQIEQLKSQIENQHITESSQTHVVKNHGKGNTIVQDDQPQCSASIASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGKDNPKQHIAHFVETCENAGTRGDLLVKQFVRTLKGNAFDWYTDLEPESLDSWEELEREILNRFYSTRRTVSMFELTNTKQRKGELVVNYINRWRAMSLDCKDRLTELSSVEMCIQGMHWELLYILKGINLAPLKN

Homology

[Close]

BLAST of Lag0041021 vs. NCBI nr
Match: KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 396.7 bits (1018), Expect = 2.9e-106
Identity = 194/281 (69.04%), Postives = 229/281 (81.49%), Query Frame = 0


Query: 216 DHPRRSTSQQADHPRRSTMTVMMTGTRTMEERMVEMQEHIDTLMKAIEEKDSQIEQLKSQ 275
           +H   S     + P+ + M+VM+T   T E+RM E+++ ++ LMKA+EE+D +I  LK+ 
Sbjct: 64  EHNSLSERSNEEVPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIALLKNH 123

Query: 276 IENQHITESSQTHVVKNHGKGNTIVQDDQPQCSASIASLSIQQLQDMITNCIRAQYGGPT 335
           IE++   ESS TH +KN  KG  I+Q+ QPQ S SIASLS+QQLQ+MI N I+ QYGGP 
Sbjct: 124 IESRDAAESSHTHTIKNANKGKAIMQESQPQNSTSIASLSVQQLQEMIANSIKTQYGGPA 183

Query: 336 QDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGKDNPKQHIAHFVETCENAGTRGDLLVK 395
           Q   LYSKPYTKRIDN+R P GYQPPKFQQFDGK NPKQH+AHF+ETCE AGTRGDLLVK
Sbjct: 184 QTFSLYSKPYTKRIDNMRMPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVK 243

Query: 396 QFVRTLKGNAFDWYTDLEPESLDSWEELEREILNRFYSTRRTVSMFELTNTKQRKGELVV 455
           QFVRTLKGNAFDWYTDLEPES+DSWE+LER+ LNRFYSTRR VSM ELT TKQRKGE V+
Sbjct: 244 QFVRTLKGNAFDWYTDLEPESIDSWEQLERDFLNRFYSTRRIVSMIELTATKQRKGEPVI 303

Query: 456 NYINRWRAMSLDCKDRLTELSSVEMCIQGMHWELLYILKGI 497
           +YINRWRA+SLDCKDRLTELS+VEMC QGMHW LLYIL+GI
Sbjct: 304 DYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGI 344

[Close]

BLAST of Lag0041021 vs. NCBI nr
Match: KAA0058295.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 395.2 bits (1014), Expect = 8.4e-106
Identity = 191/277 (68.95%), Postives = 229/277 (82.67%), Query Frame = 0


Query: 220 RSTSQQADHPRRSTMTVMMTGTRTMEERMVEMQEHIDTLMKAIEEKDSQIEQLKSQIENQ 279
           + +S++  HP  + M+VM+T   T E RM E+++ ++ LMK +EE+D +I  LK+ IE++
Sbjct: 38  KPSSEEMSHP--NIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESR 97

Query: 280 HITESSQTHVVKNHGKGNTIVQDDQPQCSASIASLSIQQLQDMITNCIRAQYGGPTQDSL 339
              ESS  H+VKN  KG  ++Q+ QPQ S SIASLS+QQLQ+MI + I+ QYGGP Q   
Sbjct: 98  DAAESSHKHIVKNTDKGKAVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYGGPAQTFS 157

Query: 340 LYSKPYTKRIDNLRTPIGYQPPKFQQFDGKDNPKQHIAHFVETCENAGTRGDLLVKQFVR 399
           LYSKPYTKRIDNLR P GYQPPKFQQFDGK NPKQH+AHF+ETCE AGTRGDLLVKQFVR
Sbjct: 158 LYSKPYTKRIDNLRMPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVR 217

Query: 400 TLKGNAFDWYTDLEPESLDSWEELEREILNRFYSTRRTVSMFELTNTKQRKGELVVNYIN 459
           TLKGNAFDWY DLEPES+D+WE+LER+ LNRFYSTRR VSM ELTNT+Q+KGELV+NYIN
Sbjct: 218 TLKGNAFDWYIDLEPESIDNWEQLERDFLNRFYSTRRIVSMMELTNTRQQKGELVINYIN 277

Query: 460 RWRAMSLDCKDRLTELSSVEMCIQGMHWELLYILKGI 497
           RWRA+SLDCKDRLTELS+VEMC QGMHW LLYIL+GI
Sbjct: 278 RWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGI 312

[Close]

BLAST of Lag0041021 vs. NCBI nr
Match: KAA0060505.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 390.6 bits (1002), Expect = 2.1e-104
Identity = 190/276 (68.84%), Postives = 227/276 (82.25%), Query Frame = 0


Query: 220 RSTSQQADHPRRSTMTVMMTGTRTMEERMVEMQEHIDTLMKAIEEKDSQIEQLKSQIENQ 279
           + +S++  HP  + M+VM+T   T E RMVE++E ++ LMK +EE+D +I  LK+ IE++
Sbjct: 70  KPSSEKMPHP--NIMSVMVTNVDTSENRMVELEEKVNMLMKVVEERDYEIAFLKNHIESR 129

Query: 280 HITESSQTHVVKNHGKGNTIVQDDQPQCSASIASLSIQQLQDMITNCIRAQYGGPTQDSL 339
              ESS  H VKN  KG  ++Q+ QPQ S SIASLS+QQLQ+MI N I+ QYGGP Q   
Sbjct: 130 DAAESSHKHTVKNTDKGKAVMQESQPQNSTSIASLSVQQLQEMIANSIKTQYGGPAQTFS 189

Query: 340 LYSKPYTKRIDNLRTPIGYQPPKFQQFDGKDNPKQHIAHFVETCENAGTRGDLLVKQFVR 399
           LYSKPYTKRI NLR P GYQPPKFQQFDGK NPKQH+AHF+ETCE AGTRGDLLVKQFV+
Sbjct: 190 LYSKPYTKRITNLRMPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVQ 249

Query: 400 TLKGNAFDWYTDLEPESLDSWEELEREILNRFYSTRRTVSMFELTNTKQRKGELVVNYIN 459
           TLKGNAFDWY DLEPES+D+WE+LER+ LNRFYSTRR VSM ELTNT+Q+KGELV++YIN
Sbjct: 250 TLKGNAFDWYIDLEPESIDNWEQLERDFLNRFYSTRRIVSMMELTNTRQQKGELVIDYIN 309

Query: 460 RWRAMSLDCKDRLTELSSVEMCIQGMHWELLYILKG 496
           RWRA+SLDCKDRLTELS+VEMC QGMHW LLYIL+G
Sbjct: 310 RWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQG 343

[Close]

BLAST of Lag0041021 vs. NCBI nr
Match: KAA0059562.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 390.2 bits (1001), Expect = 2.7e-104
Identity = 190/281 (67.62%), Postives = 227/281 (80.78%), Query Frame = 0


Query: 216 DHPRRSTSQQADHPRRSTMTVMMTGTRTMEERMVEMQEHIDTLMKAIEEKDSQIEQLKSQ 275
           +H   S     + P+ + M+VM+T   T E RM E+++ ++ LMK +EE+D +I  LK+ 
Sbjct: 64  EHNSLSECSNEEVPQPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNH 123

Query: 276 IENQHITESSQTHVVKNHGKGNTIVQDDQPQCSASIASLSIQQLQDMITNCIRAQYGGPT 335
           IE++   ESS  H VKN  KG  ++Q+ QPQ S SIASLS+QQLQ+MI + I+ QYGGP 
Sbjct: 124 IESRDAAESSHKHTVKNTDKGKAVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYGGPA 183

Query: 336 QDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGKDNPKQHIAHFVETCENAGTRGDLLVK 395
           Q   LYSKPYTKRIDNLR P GYQPPKFQQFDGK NPKQH+AHF+ETCE AGTRGDLLVK
Sbjct: 184 QTFSLYSKPYTKRIDNLRMPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVK 243

Query: 396 QFVRTLKGNAFDWYTDLEPESLDSWEELEREILNRFYSTRRTVSMFELTNTKQRKGELVV 455
           QFVRTLKGNAFDWY DLEPES+D+WE+LER+ LNRFYSTRR VSM ELTNT+Q+KGELV+
Sbjct: 244 QFVRTLKGNAFDWYIDLEPESIDNWEQLERDFLNRFYSTRRIVSMMELTNTRQQKGELVI 303

Query: 456 NYINRWRAMSLDCKDRLTELSSVEMCIQGMHWELLYILKGI 497
           +YINRWRA+SLDCKDRLTELS+VEMC QGMHW LLYIL+GI
Sbjct: 304 DYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGI 344

[Close]

BLAST of Lag0041021 vs. NCBI nr
Match: XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])

HSP 1 Score: 389.0 bits (998), Expect = 6.0e-104
Identity = 195/277 (70.40%), Postives = 229/277 (82.67%), Query Frame = 0


Query: 221 STSQQADHPRRSTMTVMMTGTRTMEERMVEMQEHIDTLMKAIEEKDSQIEQLKSQIENQH 280
           S S +  HP    M+VMM     +E  M EM+  I+ LMK ++E+D +I  LK Q++ + 
Sbjct: 71  SRSLKEAHP--DVMSVMMADV-AVETAMAEMERKINLLMKVVDERDHEIAALKEQMQTRE 130

Query: 281 ITESSQTHVVKNHGKGNTIVQDDQP-QCSASIASLSIQQLQDMITNCIRAQYGGPTQDSL 340
             ESSQT VVK   KG  +VQ++QP Q S S+ASLS+QQLQDMITN IRAQYGGP+Q S 
Sbjct: 131 TAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITNSIRAQYGGPSQTSF 190

Query: 341 LYSKPYTKRIDNLRTPIGYQPPKFQQFDGKDNPKQHIAHFVETCENAGTRGDLLVKQFVR 400
           +YSKPYTKRIDNLR P+GYQPPKFQQFDGK NPKQH+AHFVETCENAG+RGD LV+QFVR
Sbjct: 191 MYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHVAHFVETCENAGSRGDQLVRQFVR 250

Query: 401 TLKGNAFDWYTDLEPESLDSWEELEREILNRFYSTRRTVSMFELTNTKQRKGELVVNYIN 460
           +LKGNAF+WYTDLEPES++SWE+LE+E LNRFYSTRRTVSM ELTNTKQRKGE V++YIN
Sbjct: 251 SLKGNAFEWYTDLEPESIESWEQLEKEFLNRFYSTRRTVSMMELTNTKQRKGEPVIDYIN 310

Query: 461 RWRAMSLDCKDRLTELSSVEMCIQGMHWELLYILKGI 497
           RWRA+SLDCKDRLTELS+VEMC QGMHW LLYIL+GI
Sbjct: 311 RWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGI 344

[Close]

BLAST of Lag0041021 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 1.4e-106
Identity = 194/281 (69.04%), Postives = 229/281 (81.49%), Query Frame = 0


Query: 216 DHPRRSTSQQADHPRRSTMTVMMTGTRTMEERMVEMQEHIDTLMKAIEEKDSQIEQLKSQ 275
           +H   S     + P+ + M+VM+T   T E+RM E+++ ++ LMKA+EE+D +I  LK+ 
Sbjct: 64  EHNSLSERSNEEVPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIALLKNH 123

Query: 276 IENQHITESSQTHVVKNHGKGNTIVQDDQPQCSASIASLSIQQLQDMITNCIRAQYGGPT 335
           IE++   ESS TH +KN  KG  I+Q+ QPQ S SIASLS+QQLQ+MI N I+ QYGGP 
Sbjct: 124 IESRDAAESSHTHTIKNANKGKAIMQESQPQNSTSIASLSVQQLQEMIANSIKTQYGGPA 183

Query: 336 QDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGKDNPKQHIAHFVETCENAGTRGDLLVK 395
           Q   LYSKPYTKRIDN+R P GYQPPKFQQFDGK NPKQH+AHF+ETCE AGTRGDLLVK
Sbjct: 184 QTFSLYSKPYTKRIDNMRMPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVK 243

Query: 396 QFVRTLKGNAFDWYTDLEPESLDSWEELEREILNRFYSTRRTVSMFELTNTKQRKGELVV 455
           QFVRTLKGNAFDWYTDLEPES+DSWE+LER+ LNRFYSTRR VSM ELT TKQRKGE V+
Sbjct: 244 QFVRTLKGNAFDWYTDLEPESIDSWEQLERDFLNRFYSTRRIVSMIELTATKQRKGEPVI 303

Query: 456 NYINRWRAMSLDCKDRLTELSSVEMCIQGMHWELLYILKGI 497
           +YINRWRA+SLDCKDRLTELS+VEMC QGMHW LLYIL+GI
Sbjct: 304 DYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGI 344

[Close]

BLAST of Lag0041021 vs. ExPASy TrEMBL
Match: A0A5A7UXF0 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006290 PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 4.1e-106
Identity = 191/277 (68.95%), Postives = 229/277 (82.67%), Query Frame = 0


Query: 220 RSTSQQADHPRRSTMTVMMTGTRTMEERMVEMQEHIDTLMKAIEEKDSQIEQLKSQIENQ 279
           + +S++  HP  + M+VM+T   T E RM E+++ ++ LMK +EE+D +I  LK+ IE++
Sbjct: 38  KPSSEEMSHP--NIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESR 97

Query: 280 HITESSQTHVVKNHGKGNTIVQDDQPQCSASIASLSIQQLQDMITNCIRAQYGGPTQDSL 339
              ESS  H+VKN  KG  ++Q+ QPQ S SIASLS+QQLQ+MI + I+ QYGGP Q   
Sbjct: 98  DAAESSHKHIVKNTDKGKAVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYGGPAQTFS 157

Query: 340 LYSKPYTKRIDNLRTPIGYQPPKFQQFDGKDNPKQHIAHFVETCENAGTRGDLLVKQFVR 399
           LYSKPYTKRIDNLR P GYQPPKFQQFDGK NPKQH+AHF+ETCE AGTRGDLLVKQFVR
Sbjct: 158 LYSKPYTKRIDNLRMPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVR 217

Query: 400 TLKGNAFDWYTDLEPESLDSWEELEREILNRFYSTRRTVSMFELTNTKQRKGELVVNYIN 459
           TLKGNAFDWY DLEPES+D+WE+LER+ LNRFYSTRR VSM ELTNT+Q+KGELV+NYIN
Sbjct: 218 TLKGNAFDWYIDLEPESIDNWEQLERDFLNRFYSTRRIVSMMELTNTRQQKGELVINYIN 277

Query: 460 RWRAMSLDCKDRLTELSSVEMCIQGMHWELLYILKGI 497
           RWRA+SLDCKDRLTELS+VEMC QGMHW LLYIL+GI
Sbjct: 278 RWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGI 312

[Close]

BLAST of Lag0041021 vs. ExPASy TrEMBL
Match: A0A5A7V3R7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G003520 PE=4 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 1.0e-104
Identity = 190/276 (68.84%), Postives = 227/276 (82.25%), Query Frame = 0


Query: 220 RSTSQQADHPRRSTMTVMMTGTRTMEERMVEMQEHIDTLMKAIEEKDSQIEQLKSQIENQ 279
           + +S++  HP  + M+VM+T   T E RMVE++E ++ LMK +EE+D +I  LK+ IE++
Sbjct: 70  KPSSEKMPHP--NIMSVMVTNVDTSENRMVELEEKVNMLMKVVEERDYEIAFLKNHIESR 129

Query: 280 HITESSQTHVVKNHGKGNTIVQDDQPQCSASIASLSIQQLQDMITNCIRAQYGGPTQDSL 339
              ESS  H VKN  KG  ++Q+ QPQ S SIASLS+QQLQ+MI N I+ QYGGP Q   
Sbjct: 130 DAAESSHKHTVKNTDKGKAVMQESQPQNSTSIASLSVQQLQEMIANSIKTQYGGPAQTFS 189

Query: 340 LYSKPYTKRIDNLRTPIGYQPPKFQQFDGKDNPKQHIAHFVETCENAGTRGDLLVKQFVR 399
           LYSKPYTKRI NLR P GYQPPKFQQFDGK NPKQH+AHF+ETCE AGTRGDLLVKQFV+
Sbjct: 190 LYSKPYTKRITNLRMPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVQ 249

Query: 400 TLKGNAFDWYTDLEPESLDSWEELEREILNRFYSTRRTVSMFELTNTKQRKGELVVNYIN 459
           TLKGNAFDWY DLEPES+D+WE+LER+ LNRFYSTRR VSM ELTNT+Q+KGELV++YIN
Sbjct: 250 TLKGNAFDWYIDLEPESIDNWEQLERDFLNRFYSTRRIVSMMELTNTRQQKGELVIDYIN 309

Query: 460 RWRAMSLDCKDRLTELSSVEMCIQGMHWELLYILKG 496
           RWRA+SLDCKDRLTELS+VEMC QGMHW LLYIL+G
Sbjct: 310 RWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQG 343

[Close]

BLAST of Lag0041021 vs. ExPASy TrEMBL
Match: A0A5A7UUI7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold518G00790 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 1.3e-104
Identity = 190/281 (67.62%), Postives = 227/281 (80.78%), Query Frame = 0


Query: 216 DHPRRSTSQQADHPRRSTMTVMMTGTRTMEERMVEMQEHIDTLMKAIEEKDSQIEQLKSQ 275
           +H   S     + P+ + M+VM+T   T E RM E+++ ++ LMK +EE+D +I  LK+ 
Sbjct: 64  EHNSLSECSNEEVPQPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNH 123

Query: 276 IENQHITESSQTHVVKNHGKGNTIVQDDQPQCSASIASLSIQQLQDMITNCIRAQYGGPT 335
           IE++   ESS  H VKN  KG  ++Q+ QPQ S SIASLS+QQLQ+MI + I+ QYGGP 
Sbjct: 124 IESRDAAESSHKHTVKNTDKGKAVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYGGPA 183

Query: 336 QDSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGKDNPKQHIAHFVETCENAGTRGDLLVK 395
           Q   LYSKPYTKRIDNLR P GYQPPKFQQFDGK NPKQH+AHF+ETCE AGTRGDLLVK
Sbjct: 184 QTFSLYSKPYTKRIDNLRMPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVK 243

Query: 396 QFVRTLKGNAFDWYTDLEPESLDSWEELEREILNRFYSTRRTVSMFELTNTKQRKGELVV 455
           QFVRTLKGNAFDWY DLEPES+D+WE+LER+ LNRFYSTRR VSM ELTNT+Q+KGELV+
Sbjct: 244 QFVRTLKGNAFDWYIDLEPESIDNWEQLERDFLNRFYSTRRIVSMMELTNTRQQKGELVI 303

Query: 456 NYINRWRAMSLDCKDRLTELSSVEMCIQGMHWELLYILKGI 497
           +YINRWRA+SLDCKDRLTELS+VEMC QGMHW LLYIL+GI
Sbjct: 304 DYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGI 344

[Close]

BLAST of Lag0041021 vs. ExPASy TrEMBL
Match: A0A5D3D4X3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001130 PE=4 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 2.9e-104
Identity = 189/280 (67.50%), Postives = 227/280 (81.07%), Query Frame = 0


Query: 217 HPRRSTSQQADHPRRSTMTVMMTGTRTMEERMVEMQEHIDTLMKAIEEKDSQIEQLKSQI 276
           H   S     + P+++ M+VM+T     E+RM E+++ ++ LMK +EE+D +I  LK+ I
Sbjct: 33  HNSLSERSNEEAPQQNIMSVMVTDVDESEDRMAELEKKVNMLMKVVEERDYEIAFLKNHI 92

Query: 277 ENQHITESSQTHVVKNHGKGNTIVQDDQPQCSASIASLSIQQLQDMITNCIRAQYGGPTQ 336
           E++   ESS  H VKN  KG  ++Q+ QPQ S SIASLS+QQLQ+MI + I+ QYGGP Q
Sbjct: 93  ESRDAAESSHKHTVKNTDKGKAVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYGGPAQ 152

Query: 337 DSLLYSKPYTKRIDNLRTPIGYQPPKFQQFDGKDNPKQHIAHFVETCENAGTRGDLLVKQ 396
              LYSKPYTKRIDNLR P GYQPPKFQQFDGK NPKQH+AHF+ETCE AGTRGDLLVKQ
Sbjct: 153 TFSLYSKPYTKRIDNLRMPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQ 212

Query: 397 FVRTLKGNAFDWYTDLEPESLDSWEELEREILNRFYSTRRTVSMFELTNTKQRKGELVVN 456
           FVRTLKGNAFDWY DLEPES+D+WE+LER+ LNRFYSTRR VSM ELTNT+Q+KGELV++
Sbjct: 213 FVRTLKGNAFDWYIDLEPESIDNWEQLERDFLNRFYSTRRIVSMMELTNTRQQKGELVID 272

Query: 457 YINRWRAMSLDCKDRLTELSSVEMCIQGMHWELLYILKGI 497
           YINRWRA+SLDCKDRLTELS+VEMC QGMHW LLYIL+GI
Sbjct: 273 YINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGI 312

The following BLAST results are available for this feature:

BLAST of Lag0041021 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047477.1	2.9e-106	69.04	uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]	[more]
KAA0058295.1	8.4e-106	68.95	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0060505.1	2.1e-104	68.84	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0059562.1	2.7e-104	67.62	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_031742199.1	6.0e-104	70.40	uncharacterized protein LOC105435721 [Cucumis sativus]	[more]

BLAST of Lag0041021 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0041021 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZU9	1.4e-106	69.04	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940...	[more]
A0A5A7UXF0	4.1e-106	68.95	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7V3R7	1.0e-104	68.84	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7UUI7	1.3e-104	67.62	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3D4X3	2.9e-104	67.50	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Lag0041021 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 248..282
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..236
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..226
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..107
None	No IPR available	PANTHER	PTHR33223	FAMILY NOT NAMED	coord: 358..491
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 397..486 e-value: 8.3E-9 score: 35.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0041021.1	Lag0041021.1	mRNA