Lag0041020 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0041020
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	CCHC-type domain-containing protein
Location	chr13: 10920603 .. 10920926 (-)
RNA-Seq Expression	Lag0041020
Synteny	Lag0041020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGATTTAGTGAACCGGTGGAAGAAGATGACATTGACAGGGGAGGAGGCGGAGGCGATACGACCAAATGAAGCGGCGCCGCCTCTTTCGGTCAGTTCGAGGGACTTGTGTGTAGTGGGTCGGGTGTTGTCGACTAAGAGGGTGAATCCAGATGCTTTCCGTTCAGTGATGAGAGGGGCCTGGCATGCGAATGTGGGGACAAGAATTGAAGCGGCAGGGATAATGTGTTCGTGGTGCAGTTTCGATCACAAGGAGAGAAGGCGAGAGTGTTGGCCACAGGTCCCTGGGCTTTTGACCGGTCTCTGGTCCCTGGGCTTTTGA

mRNA sequence

ATGGACGATTTAGTGAACCGGTGGAAGAAGATGACATTGACAGGGGAGGAGGCGGAGGCGATACGACCAAATGAAGCGGCGCCGCCTCTTTCGGTCAGTTCGAGGGACTTGTGTGTAGTGGGTCGGGTGTTGTCGACTAAGAGGGTGAATCCAGATGCTTTCCGTTCAGTGATGAGAGGGGCCTGGCATGCGAATGTGGGGACAAGAATTGAAGCGGCAGGGATAATGTGTTCGTGGTGCAGTTTCGATCACAAGGAGAGAAGGCGAGAGTGTTGGCCACAGGTCCCTGGGCTTTTGACCGGTCTCTGGTCCCTGGGCTTTTGA

Coding sequence (CDS)

ATGGACGATTTAGTGAACCGGTGGAAGAAGATGACATTGACAGGGGAGGAGGCGGAGGCGATACGACCAAATGAAGCGGCGCCGCCTCTTTCGGTCAGTTCGAGGGACTTGTGTGTAGTGGGTCGGGTGTTGTCGACTAAGAGGGTGAATCCAGATGCTTTCCGTTCAGTGATGAGAGGGGCCTGGCATGCGAATGTGGGGACAAGAATTGAAGCGGCAGGGATAATGTGTTCGTGGTGCAGTTTCGATCACAAGGAGAGAAGGCGAGAGTGTTGGCCACAGGTCCCTGGGCTTTTGACCGGTCTCTGGTCCCTGGGCTTTTGA

Protein sequence

MDDLVNRWKKMTLTGEEAEAIRPNEAAPPLSVSSRDLCVVGRVLSTKRVNPDAFRSVMRGAWHANVGTRIEAAGIMCSWCSFDHKERRRECWPQVPGLLTGLWSLGF

Homology

[Close]

BLAST of Lag0041020 vs. NCBI nr
Match: XP_022156711.1 (uncharacterized protein LOC111023555 [Momordica charantia])

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-06
Identity = 30/75 (40.00%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 1  MDDLVNRWKKMTLTGEEAEAIRPNEAAPPLSVSSRDLCVVGRVLSTKRVNPDAFRSVMRG 60
          MDD+   W+  TL  EE + I  +   P L+V +  LC VG++  +KR+  +AF SVM+ 
Sbjct: 1  MDDITKLWENFTLIKEEEDTIVIDNQKPILTVDNIQLCAVGKLHPSKRITVEAFASVMKQ 60

Query: 61 AWHANVGTRIEAAGI 76
           W  +  TRIE AG+
Sbjct: 61 VWKIHNSTRIETAGL 75

[Close]

BLAST of Lag0041020 vs. NCBI nr
Match: XP_022158119.1 (uncharacterized protein LOC111024676, partial [Momordica charantia])

HSP 1 Score: 60.5 bits (145), Expect = 1.0e-05
Identity = 28/75 (37.33%), Postives = 43/75 (57.33%), Query Frame = 0


Query: 1  MDDLVNRWKKMTLTGEEAEAIRPNEAAPPLSVSSRDLCVVGRVLSTKRVNPDAFRSVMRG 60
          MD++   W+   LT EE E    +   P L+  +  LC VG++ ++KR++  A  SVM+ 
Sbjct: 1  MDEITELWENFNLTNEEEETFIVDNQQPILTAENIQLCGVGKLHTSKRISAKALASVMKQ 60

Query: 61 AWHANVGTRIEAAGI 76
           W  +  TRIEAAG+
Sbjct: 61 VWKIHESTRIEAAGL 75

[Close]

BLAST of Lag0041020 vs. NCBI nr
Match: TXG54000.1 (hypothetical protein EZV62_019256 [Acer yangbiense])

HSP 1 Score: 58.2 bits (139), Expect = 5.2e-05
Identity = 33/104 (31.73%), Postives = 49/104 (47.12%), Query Frame = 0


Query: 3   DLVNRWKKMTLTGEEAEAIRPNEAAPPLSVSSRDLCVVGRVLSTKRVNPDAFRSVMRGAW 62
           DLV   + +++   + + +  +E      V   D  +VGRVLS K+VN DAF+S++   W
Sbjct: 13  DLVGLCENLSVMDVDGKVLEVSEEVQIDGVEDVDRSLVGRVLSGKKVNRDAFKSLIDQLW 72

Query: 63  HANVGTRIEAAGIMCSWCSFDHKERRRECWPQVPGLLTGLWSLG 107
           H      IE  G+     SF +K+ R   W        GLW  G
Sbjct: 73  HPFGSVEIEMVGVNTFTFSFPNKDDRNRFW------CRGLWHFG 110

[Close]

BLAST of Lag0041020 vs. NCBI nr
Match: TXG73888.1 (hypothetical protein EZV62_002467 [Acer yangbiense])

HSP 1 Score: 57.8 bits (138), Expect = 6.8e-05
Identity = 30/94 (31.91%), Postives = 47/94 (50.00%), Query Frame = 0


Query: 3  DLVNRWKKMTLTGEEAEAIRPNEAAPPLSVSSRDLCVVGRVLSTKRVNPDAFRSVMRGAW 62
          +L   W+ +++  E++E  + +E      V   D C+VG+VLS KRVN +AF+SV+   W
Sbjct: 5  ELARLWENLSIKDEDSEIHQVSEGLGKEGVEDVDHCLVGKVLSRKRVNREAFKSVIEQLW 64

Query: 63 HANVGTRIEAAGIMCSWCSFDHKERRRECWPQVP 97
                 IE  G       F + E R + W + P
Sbjct: 65 SPFGIVEIEVVGENIFMFYFSNPEVRNQIWRRGP 98

[Close]

BLAST of Lag0041020 vs. NCBI nr
Match: XP_022149484.1 (uncharacterized protein LOC111017902 [Momordica charantia])

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-04
Identity = 24/75 (32.00%), Postives = 43/75 (57.33%), Query Frame = 0


Query: 1  MDDLVNRWKKMTLTGEEAEAIRPNEAAPPLSVSSRDLCVVGRVLSTKRVNPDAFRSVMRG 60
          MD++ + W+    T +E E +  +   P L+  +  LCVV ++ ++KR++ +A RSVM+ 
Sbjct: 1  MDEITDLWEHFKSTNDENETVTIDRGKPILTADNVKLCVVAKLHTSKRISAEAIRSVMKS 60

Query: 61 AWHANVGTRIEAAGI 76
           W  +  TR E  G+
Sbjct: 61 VWRVHNSTRFEPLGM 75

The following BLAST results are available for this feature:

BLAST of Lag0041020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156711.1	1.2e-06	40.00	uncharacterized protein LOC111023555 [Momordica charantia]	[more]
XP_022158119.1	1.0e-05	37.33	uncharacterized protein LOC111024676, partial [Momordica charantia]	[more]
TXG54000.1	5.2e-05	31.73	hypothetical protein EZV62_019256 [Acer yangbiense]	[more]
TXG73888.1	6.8e-05	31.91	hypothetical protein EZV62_002467 [Acer yangbiense]	[more]
XP_022149484.1	1.2e-04	32.00	uncharacterized protein LOC111017902 [Momordica charantia]	[more]

BLAST of Lag0041020 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0041020.1	Lag0041020.1	mRNA