Lag0041012 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0041012
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr13: 10786099 .. 10786428 (-)
RNA-Seq ExpressionLag0041012
SyntenyLag0041012
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCCCTCCCCCCGCAGCGTCCTTCAAGCTGAATGTGGATGCTTCATGGAGCAACACAACTCGATCCATGACTCCGAGGGATCTTTGGTACTCGCTGGTCACAAATTATGCAAGGAGAATTGGTCAATTTTAGCGTTGGAAGCCATTGCGGTTAAAGAGGGCCTCAAAAATTACCTCTCCTCCTGTTCTGATCGTTTGACCCTGCTGATAGTCGAATTGGACTCGGCCTTGCTGATCAAAATTCTGAACCAGCAAGAATCAAACCTCTCTGAAGCCAAAATTATGGCGGACAAAATTGTAGATCTAGCGCGGGGTGTGAAGATTTAA

mRNA sequence

ATGGACCCCTCCCCCCGCAGCGTCCTTCAAGCTGAATGTGGATGCTTCATGGAGCAACACAACTCGATCCATGACTCCGAGGGATCTTTGGTACTCGCTGGTCACAAATTATGCAAGGAGAATTGGTCAATTTTAGCGTTGGAAGCCATTGCGGTTAAAGAGGGCCTCAAAAATTACCTCTCCTCCTGTTCTGATCGTTTGACCCTGCTGATAGTCGAATTGGACTCGGCCTTGCTGATCAAAATTCTGAACCAGCAAGAATCAAACCTCTCTGAAGCCAAAATTATGGCGGACAAAATTGTAGATCTAGCGCGGGGTGTGAAGATTTAA

Coding sequence (CDS)

ATGGACCCCTCCCCCCGCAGCGTCCTTCAAGCTGAATGTGGATGCTTCATGGAGCAACACAACTCGATCCATGACTCCGAGGGATCTTTGGTACTCGCTGGTCACAAATTATGCAAGGAGAATTGGTCAATTTTAGCGTTGGAAGCCATTGCGGTTAAAGAGGGCCTCAAAAATTACCTCTCCTCCTGTTCTGATCGTTTGACCCTGCTGATAGTCGAATTGGACTCGGCCTTGCTGATCAAAATTCTGAACCAGCAAGAATCAAACCTCTCTGAAGCCAAAATTATGGCGGACAAAATTGTAGATCTAGCGCGGGGTGTGAAGATTTAA

Protein sequence

MDPSPRSVLQAECGCFMEQHNSIHDSEGSLVLAGHKLCKENWSILALEAIAVKEGLKNYLSSCSDRLTLLIVELDSALLIKILNQQESNLSEAKIMADKIVDLARGVKI
Homology
The following BLAST results are available for this feature:
BLAST of Lag0041012 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0041012 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 23..104
e-value: 7.1E-5
score: 22.6

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0041012.1Lag0041012.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity