Lag0041010 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0041010
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	ARM repeat superfamily protein
Location	chr13: 10774157 .. 10776578 (-)
RNA-Seq Expression	Lag0041010
Synteny	Lag0041010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCATGATTGCATCGAAGCTAGCCACTGTAAGATTTTTCCCCTCTCTCTCTCGAACTTCCTATTTTGAGAATTTTCTTCAATGGTTTTCCCCCCTTACTTGCATTAGTTTCAGCATCTGTGCAGAAGGGAACCTGCGCGGACCCTGCAATTTCGCCCCTTTTCAGTTTACGATGAAAGAGGTAAATCTTGTTTTCAGTTGATTTTGTTTGAAATGATCGATCCTGTTCCTGTCATCTGAAGAGATGGATTGTTTAGTTGCTTGGATGATGCACTCATGAAATGAGATTTAAGGGTTTCCTTTTTCTTTATTCGATGGCTATGGTTGATTTTTTTTTTTTCTTCCATTTGGATATTGGAACCTAGTCGCCTGTATTAAAGAGAAACTGATCCCGTTATGCTTAACGTAGTATTGAAATGTTCTTGACAGGAATGTCAATCCCTCAATTCTATGGAAACATAGATAGAAATATGAGTAAAATATGGATGTTGACATAAATAAGGATTTTAGATTTCTCGTATATGTTATAAATCTTATTGCTAGCATTTATATTTCTATTGTTATTAATTTTTTGATATTTTATTTTTCAGCGATATTTGTATGGTATATTAGCAACATTGGTTGATCTCTAATATTGATGTCGATCCTCGGATTTATGATAATATGAATGGACCGTTGTATTGTCGATGGATATTATATTACTTGGTTCTAACAACTAAGTGTTGGAGGACAGTAGGCTTTTAATCTTCTTTTCGTATGTTCACATCTTTGATCTAAAAGGAATATTTGCAATCTGTAAAAGTAGCTAGATGAGTTCCATGCTTATTGTCATCGTTGTTGAAGGCCTGATTGAGATTGAGTTAATTTCAGAAATCGAGAAGGATGCTGAAAGAAAAGTAGGATGGTTATTAAAACTAATCTTTGCTGGAACTGCGACATTTCTGGGTTACCATATTTTTCCATACATGGGTCAGGAAATTCTATCTCTAAGTTTCTTTTTGATTTCTTTGGATGTTAAATATTTGTAGTTTTCAATCCTTTCAGGGTGTTATCTTGAGTTAAATTTGTTCTTACAGGGGATAACTTGTTGCAGCAATCTGTGGCGCTCTTGCAAGTCAAGGATCCACTGTTTAAGAGGATGGGAGCATCTAGATTGGCTCGCTTTTCGATTGATGGTACCTCCTCATTTTCCCCACCAGAATTGGTTAAAGCTTTTGAAACTATTGATTGTAAAACTTGTCTCGAGCTTTTATCTGTCGTCGAAACTTTGTCCAGGGGTGAATAGTGCCTTGCTCACTGTCTTTCTGCAGTAATTCTTGTTAGCCCATCACATTTTCCTCCCAGGATTTTGTAAATTGTTTTAATATCTTTTGTTGAGATTCAGTAATCATGAATCCAACATAAATGCATATAACTGTACCTAACGAAGACCTTCAAATTAATGATGAAGTGTTTTCCTCTGCAACTTAGAAAAGGGTAAAATGTTAGCAAGTTAAATTGCTGGGTCAGAAACTTCTAACTGCACTGGAAAATAAAACAAAAACATCTTTCAAGAAGGGATCATAGATTTGCACTCTTTCTAGTTTCTACCATAGAAACTTGACCTTTAACTGAAAAACATTTTGTAGCTTCTGCTTGCTAAATTTTGACGAAACTTCTTCAACCTTTATCCCGTAGATAAAAAATTTTCAATTTAAAAGAAAAATCAGAAAATGTTAAGAGTTAAGACAGTCGGTCACTAGTTTTACCTTATTGCACTTTTATTGGTAACTCTAACAAAATCAACTACTTTTCTGGTCAGGGCAAGCCTGTTGAGTTTATTGCTGAGATCTGATTATAACAGTTTTCATTCTTTGCAATTACAGATGAAAGAAGGATGAAAATAGTGGAGATAGGTGGGGCTCAAGAGCTCTTAAACATGCTCGGGGCTGCCAAAGACGATCGTACACGTAAGGAAGCTTTGAAGGCTTTACACGCCATCTCACATTCAGGTCCAAAATATAATTTATGCAGATATTACTTTAATTTATTATTTAAGCTTTAGTTTCAATCTTATCCACTTAGGATTTGAGTGCATAAATATGAATAACACGTCTGGATTTGTAGTGTGCTGGATTTATATGTGCTGTTGATAGTTGAGTCCTCATCTTGAAACTAACACACTGATTTAGAGCTTCCTTATATGTCTAGAAACTGTGACGATATAAGTGGTTCTACATCCATTTTGAAACATTCAGTTTACGTATTTAATTTTCTCCCTTGTTACTTTTTCAGATGAAGCTGTTGATGCCTTGCATAAAGCAGGGGCAATCTTGGTTATTAAATCTACCCCGGATTCAGCTGAAGATATGAAAGTGAATGAGTACAAGTCAAACCTAATGAAGAGATTTAGAGATCTGAGATATGATGTTTCATCTTGA

mRNA sequence

ATGAGCATGATTGCATCGAAGCTAGCCACTCATCTGTGCAGAAGGGAACCTGCGCGGACCCTGCAATTTCGCCCCTTTTCAGTTTACGATGAAAGAGAAATCGAGAAGGATGCTGAAAGAAAAGTAGGATGGTTATTAAAACTAATCTTTGCTGGAACTGCGACATTTCTGGGTTACCATATTTTTCCATACATGGGGGATAACTTGTTGCAGCAATCTGTGGCGCTCTTGCAAGTCAAGGATCCACTGTTTAAGAGGATGGGAGCATCTAGATTGGCTCGCTTTTCGATTGATGATGAAAGAAGGATGAAAATAGTGGAGATAGGTGGGGCTCAAGAGCTCTTAAACATGCTCGGGGCTGCCAAAGACGATCGTACACGTAAGGAAGCTTTGAAGGCTTTACACGCCATCTCACATTCAGATGAAGCTGTTGATGCCTTGCATAAAGCAGGGGCAATCTTGGTTATTAAATCTACCCCGGATTCAGCTGAAGATATGAAAGTGAATGAGTACAAGTCAAACCTAATGAAGAGATTTAGAGATCTGAGATATGATGTTTCATCTTGA

Coding sequence (CDS)

ATGAGCATGATTGCATCGAAGCTAGCCACTCATCTGTGCAGAAGGGAACCTGCGCGGACCCTGCAATTTCGCCCCTTTTCAGTTTACGATGAAAGAGAAATCGAGAAGGATGCTGAAAGAAAAGTAGGATGGTTATTAAAACTAATCTTTGCTGGAACTGCGACATTTCTGGGTTACCATATTTTTCCATACATGGGGGATAACTTGTTGCAGCAATCTGTGGCGCTCTTGCAAGTCAAGGATCCACTGTTTAAGAGGATGGGAGCATCTAGATTGGCTCGCTTTTCGATTGATGATGAAAGAAGGATGAAAATAGTGGAGATAGGTGGGGCTCAAGAGCTCTTAAACATGCTCGGGGCTGCCAAAGACGATCGTACACGTAAGGAAGCTTTGAAGGCTTTACACGCCATCTCACATTCAGATGAAGCTGTTGATGCCTTGCATAAAGCAGGGGCAATCTTGGTTATTAAATCTACCCCGGATTCAGCTGAAGATATGAAAGTGAATGAGTACAAGTCAAACCTAATGAAGAGATTTAGAGATCTGAGATATGATGTTTCATCTTGA

Protein sequence

MSMIASKLATHLCRREPARTLQFRPFSVYDEREIEKDAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVALLQVKDPLFKRMGASRLARFSIDDERRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVDALHKAGAILVIKSTPDSAEDMKVNEYKSNLMKRFRDLRYDVSS

Homology

[Close]

BLAST of Lag0041010 vs. NCBI nr
Match: XP_023526983.1 (uncharacterized protein LOC111790336 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 347.8 bits (891), Expect = 5.8e-92
Identity = 176/188 (93.62%), Postives = 181/188 (96.28%), Query Frame = 0


Query: 1   MSMIASKLATHLCRREPARTLQFRPFSVYDEREIEKDAERKVGWLLKLIFAGTATFLGYH 60
           M +I SKL  HLCRREPARTLQFRPFS YDEREIEK+AERKVGWLLKLIFAGTATFLGYH
Sbjct: 1   MRIIVSKLTAHLCRREPARTLQFRPFSAYDEREIEKEAERKVGWLLKLIFAGTATFLGYH 60

Query: 61  IFPYMGDNLLQQSVALLQVKDPLFKRMGASRLARFSIDDERRMKIVEIGGAQELLNMLGA 120
           IFPYMGDNLLQQSV+LLQVKDPLFKRMGASRLARFSIDDE+RMKIVEIGGAQELLNMLGA
Sbjct: 61  IFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGA 120

Query: 121 AKDDRTRKEALKALHAISHSDEAVDALHKAGAILVIKSTPDSAEDMKVNEYKSNLMKRFR 180
           AKDDRTRKEALKALHAISHSDEAV ALHKAGAILVIKSTPDSAEDM+VNEYKSNLMKRFR
Sbjct: 121 AKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDMQVNEYKSNLMKRFR 180

Query: 181 DLRYDVSS 189
           DL YDVSS
Sbjct: 181 DLSYDVSS 188

[Close]

BLAST of Lag0041010 vs. NCBI nr
Match: XP_022941868.1 (uncharacterized protein LOC111447100 isoform X2 [Cucurbita moschata])

HSP 1 Score: 345.5 bits (885), Expect = 2.9e-91
Identity = 175/188 (93.09%), Postives = 180/188 (95.74%), Query Frame = 0


Query: 1   MSMIASKLATHLCRREPARTLQFRPFSVYDEREIEKDAERKVGWLLKLIFAGTATFLGYH 60
           M +I SKL  HLCRREPARTLQFRPFS YDEREIEK+AERKVGWLLKLIFAGTATFLGYH
Sbjct: 1   MRIIVSKLTAHLCRREPARTLQFRPFSAYDEREIEKEAERKVGWLLKLIFAGTATFLGYH 60

Query: 61  IFPYMGDNLLQQSVALLQVKDPLFKRMGASRLARFSIDDERRMKIVEIGGAQELLNMLGA 120
           IFPYMGDNLLQQSV+LLQVKDPLFKRMGASRLARFSIDDE+RMKIVEIGGAQELLNMLGA
Sbjct: 61  IFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGA 120

Query: 121 AKDDRTRKEALKALHAISHSDEAVDALHKAGAILVIKSTPDSAEDMKVNEYKSNLMKRFR 180
           AKDDRTRKEALKALHAISHSDEAV ALHKAGAILVIKSTPDSAED +VNEYKSNLMKRFR
Sbjct: 121 AKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFR 180

Query: 181 DLRYDVSS 189
           DL YDVSS
Sbjct: 181 DLSYDVSS 188

[Close]

BLAST of Lag0041010 vs. NCBI nr
Match: XP_038891777.1 (uncharacterized protein LOC120081166 isoform X1 [Benincasa hispida])

HSP 1 Score: 345.5 bits (885), Expect = 2.9e-91
Identity = 176/188 (93.62%), Postives = 180/188 (95.74%), Query Frame = 0


Query: 1   MSMIASKLATHLCRREPARTLQFRPFSVYDEREIEKDAERKVGWLLKLIFAGTATFLGYH 60
           M +IASKL THLCRREP RTLQFR FS YDEREIEK+AERKVGWLLKLIFAGTATF+GY 
Sbjct: 1   MRIIASKLTTHLCRREPVRTLQFRTFSAYDEREIEKEAERKVGWLLKLIFAGTATFIGYQ 60

Query: 61  IFPYMGDNLLQQSVALLQVKDPLFKRMGASRLARFSIDDERRMKIVEIGGAQELLNMLGA 120
           IFPYMGDNLLQQSV+LLQVKDPLFKRMGASRLARFSIDDERRMKIVEIGGAQELLNMLGA
Sbjct: 61  IFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDERRMKIVEIGGAQELLNMLGA 120

Query: 121 AKDDRTRKEALKALHAISHSDEAVDALHKAGAILVIKSTPDSAEDMKVNEYKSNLMKRFR 180
           AKDDRTRKEALKALHAISHSDEAV ALHKAGAILVIKSTPDSAEDMKVNEYKSNLMKRFR
Sbjct: 121 AKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDMKVNEYKSNLMKRFR 180

Query: 181 DLRYDVSS 189
           DL YDVSS
Sbjct: 181 DLSYDVSS 188

[Close]

BLAST of Lag0041010 vs. NCBI nr
Match: XP_011655026.1 (uncharacterized protein LOC101212969 isoform X2 [Cucumis sativus])

HSP 1 Score: 344.4 bits (882), Expect = 6.4e-91
Identity = 175/188 (93.09%), Postives = 180/188 (95.74%), Query Frame = 0


Query: 1   MSMIASKLATHLCRREPARTLQFRPFSVYDEREIEKDAERKVGWLLKLIFAGTATFLGYH 60
           M +IASKL THLCRREP RTLQFR FS YDEREIEK+AERKVGWLLKLIFAGTATFLGY 
Sbjct: 1   MRIIASKLTTHLCRREPVRTLQFRTFSAYDEREIEKEAERKVGWLLKLIFAGTATFLGYQ 60

Query: 61  IFPYMGDNLLQQSVALLQVKDPLFKRMGASRLARFSIDDERRMKIVEIGGAQELLNMLGA 120
           IFPYMGDNLLQQSV+LL+VKDPLFKRMGASRLARFSIDDE+RMKIVEIGGAQELLNMLGA
Sbjct: 61  IFPYMGDNLLQQSVSLLRVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGA 120

Query: 121 AKDDRTRKEALKALHAISHSDEAVDALHKAGAILVIKSTPDSAEDMKVNEYKSNLMKRFR 180
           AKDDRTRKEALKALHAISHSDEA  ALHKAGAILVIKSTPDSAEDMKVNEYKSNLMKRFR
Sbjct: 121 AKDDRTRKEALKALHAISHSDEAAGALHKAGAILVIKSTPDSAEDMKVNEYKSNLMKRFR 180

Query: 181 DLRYDVSS 189
           DLRYDVSS
Sbjct: 181 DLRYDVSS 188

[Close]

BLAST of Lag0041010 vs. NCBI nr
Match: XP_022996604.1 (uncharacterized protein LOC111491787 isoform X2 [Cucurbita maxima])

HSP 1 Score: 343.2 bits (879), Expect = 1.4e-90
Identity = 174/188 (92.55%), Postives = 180/188 (95.74%), Query Frame = 0


Query: 1   MSMIASKLATHLCRREPARTLQFRPFSVYDEREIEKDAERKVGWLLKLIFAGTATFLGYH 60
           M +I SKL  HLCRREPARTLQFRPFS YDEREIEK+AERKVGWLLKLIFAGTATFLGYH
Sbjct: 1   MRIIVSKLTAHLCRREPARTLQFRPFSAYDEREIEKEAERKVGWLLKLIFAGTATFLGYH 60

Query: 61  IFPYMGDNLLQQSVALLQVKDPLFKRMGASRLARFSIDDERRMKIVEIGGAQELLNMLGA 120
           IFPYMGDNLLQQSV+LLQVKDPLFKRMGASRLARFSIDDE+RMKIVEIGGAQELLNMLGA
Sbjct: 61  IFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGA 120

Query: 121 AKDDRTRKEALKALHAISHSDEAVDALHKAGAILVIKSTPDSAEDMKVNEYKSNLMKRFR 180
           AKDDRTRKEALKALHAIS+SDEAV ALHKAGAILVIKSTPDSAED +VNEYKSNLMKRFR
Sbjct: 121 AKDDRTRKEALKALHAISYSDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFR 180

Query: 181 DLRYDVSS 189
           DL YDVSS
Sbjct: 181 DLSYDVSS 188

The following BLAST results are available for this feature:

BLAST of Lag0041010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023526983.1	5.8e-92	93.62	uncharacterized protein LOC111790336 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022941868.1	2.9e-91	93.09	uncharacterized protein LOC111447100 isoform X2 [Cucurbita moschata]	[more]
XP_038891777.1	2.9e-91	93.62	uncharacterized protein LOC120081166 isoform X1 [Benincasa hispida]	[more]
XP_011655026.1	6.4e-91	93.09	uncharacterized protein LOC101212969 isoform X2 [Cucumis sativus]	[more]
XP_022996604.1	1.4e-90	92.55	uncharacterized protein LOC111491787 isoform X2 [Cucurbita maxima]	[more]

BLAST of Lag0041010 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 64..176 e-value: 2.2E-10 score: 42.2
None	No IPR available	PANTHER	PTHR47673	ARM REPEAT SUPERFAMILY PROTEIN	coord: 1..188
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 70..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0041010.1	Lag0041010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane