Lag0040971 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040971
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	LOB domain-containing protein
Location	chr13: 10408470 .. 10409854 (+)
RNA-Seq Expression	Lag0040971
Synteny	Lag0040971

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGCAATTCGCCGTGCGCCTCGTGCAAACTCCTCCGGCGACGGTGCGCCAAAGACTGTATTTTTGCTCCCTATTTCCCCTCCGATGACCCCCACAAGTTTGCTATTGTTCATAAGGTTTTTGGTGCCAGCAATGTCAGCAAAATGTTGCAGGTTCTTCTTCTTCTTCCCTTCCTTAATTCGGTATTTTTCGGGTTTCGGGTTTTGGGTTTCGAGTATTTTTCCTGTTGTTTCATTGAAGAATTGTGATACTTAGGATATGACAGAACTTCAAACAAGTTAGAGTTTTCGTCAACATCTTTATTGATATAAAACTTTTAATCCATCGGAGCTTAATTAATATGGAATTTTCAAAATGTCATTCAAACCTAAAACAATGGATTTGTTTCTCTAGTGTTCTTGTTCTTGTCAACATCTTTGTTGGTACAAAGTTTTTTAAAACATGTAAATACAACGAATAAAACATCACAAGTCTAAAACTCGAGTTTTATTTCTGATTTCTTACCAAAGTGAACATAACTCAACAATAATTGATAAATACTTTCGAGCAAGAAGTCAGAGGTTTGAATCTCTCAATCCCAAAAGGCTGAACTCAAAAAAAAAAAGTGTTCTGATTTCCCTTCAACATCTTTATTGGTTCAAAACCTTGGACAAAATTAAAAAATACATCACGAAAAACTAAAAATACAAACTTTTTCTACTATTCTTCTCATTCTCGTTTTAACACAAATTTTCAAAACTTGAAAAAGAACAAAAAAAAAAAAAAGAAAGAAAATCACAAGTTTGTACACAAGATTTTCTCTTATATTCTATCAGCATCTCCATTGATATGAAACTTTGACGACACATTAAAAACACACACATCACAACGAACTCTTCTCTCCATCATATCAATCGCCACAAAACTTTTCAAGACATATCACAATCCTTAAACACGAGTTTTCTCTACTAATTCAACCCGGTTTTCGAGTGGATTAAAGAAGGAAAAAACAAATAAATTTGCATTTTTATGAACATTTAATTTCTTGAAACAGGAACTGCCGGTGCAACAAAGAGGCGACGCCGTGATGAGCCTAGTTTATGAGGCAAGTGCAAGAGTGAGGGATCCAGTTTATGGCTGCGTAGGGGCAATTTCGTACTTACAAAACCAAGTCTCACAGCTACAAATGCAATTGGCTGTGGCTCAAGCTGAGATTCTTTGCATCCAAATGCAACAAGACCACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGATGACAAACCGCCGTCGTCTCTCCTACTCCCGCCGCCGTCTCCGCCGCCCTCCCAGTGCCTCAATTTTGCTTCCTCTCCCAATGTAATTTATGACACCATTTTTGGACATGACATAGTTTCTTAA

mRNA sequence

ATGGGTGGCAATTCGCCGTGCGCCTCGTGCAAACTCCTCCGGCGACGGTGCGCCAAAGACTGTATTTTTGCTCCCTATTTCCCCTCCGATGACCCCCACAAGTTTGCTATTGTTCATAAGGTTTTTGGTGCCAGCAATGTCAGCAAAATGTTGCAGGAACTGCCGGTGCAACAAAGAGGCGACGCCGTGATGAGCCTAGTTTATGAGGCAAGTGCAAGAGTGAGGGATCCAGTTTATGGCTGCGTAGGGGCAATTTCGTACTTACAAAACCAAGTCTCACAGCTACAAATGCAATTGGCTGTGGCTCAAGCTGAGATTCTTTGCATCCAAATGCAACAAGACCACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGATGACAAACCGCCGTCGTCTCTCCTACTCCCGCCGCCGTCTCCGCCGCCCTCCCAGTGCCTCAATTTTGCTTCCTCTCCCAATGTAATTTATGACACCATTTTTGGACATGACATAGTTTCTTAA

Coding sequence (CDS)

ATGGGTGGCAATTCGCCGTGCGCCTCGTGCAAACTCCTCCGGCGACGGTGCGCCAAAGACTGTATTTTTGCTCCCTATTTCCCCTCCGATGACCCCCACAAGTTTGCTATTGTTCATAAGGTTTTTGGTGCCAGCAATGTCAGCAAAATGTTGCAGGAACTGCCGGTGCAACAAAGAGGCGACGCCGTGATGAGCCTAGTTTATGAGGCAAGTGCAAGAGTGAGGGATCCAGTTTATGGCTGCGTAGGGGCAATTTCGTACTTACAAAACCAAGTCTCACAGCTACAAATGCAATTGGCTGTGGCTCAAGCTGAGATTCTTTGCATCCAAATGCAACAAGACCACCCCGTTTTCCCAAATTGCCCTCAGATCCACTCCGATGACAAACCGCCGTCGTCTCTCCTACTCCCGCCGCCGTCTCCGCCGCCCTCCCAGTGCCTCAATTTTGCTTCCTCTCCCAATGTAATTTATGACACCATTTTTGGACATGACATAGTTTCTTAA

Protein sequence

MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCPQIHSDDKPPSSLLLPPPSPPPSQCLNFASSPNVIYDTIFGHDIVS

Homology

[Close]

BLAST of Lag0040971 vs. NCBI nr
Match: XP_038893139.1 (LOB domain-containing protein 12-like [Benincasa hispida])

HSP 1 Score: 335.9 bits (860), Expect = 2.0e-88
Identity = 165/167 (98.80%), Postives = 166/167 (99.40%), Query Frame = 0


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCA+DCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG
Sbjct: 1   MGGNSPCASCKLLRRRCARDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN
Sbjct: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120

Query: 121 CPQIHSDDKPPSSLLLPPPSPPPSQCLNFASSPNVIYDTIFGHDIVS 168
           CPQIHSDDKPP SLLLPPPSPPPSQCLNFASSPNVIYDTIFGHDIVS
Sbjct: 121 CPQIHSDDKPP-SLLLPPPSPPPSQCLNFASSPNVIYDTIFGHDIVS 166

[Close]

BLAST of Lag0040971 vs. NCBI nr
Match: XP_004148190.1 (LOB domain-containing protein 12 [Cucumis sativus] >KGN50694.1 hypothetical protein Csa_005796 [Cucumis sativus])

HSP 1 Score: 332.0 bits (850), Expect = 2.9e-87
Identity = 166/168 (98.81%), Postives = 166/168 (98.81%), Query Frame = 0


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN
Sbjct: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120

Query: 121 CPQIHSDDKPPSSLLLPPPSPPPSQCLNF-ASSPNVIYDTIFGHDIVS 168
           CPQIHSDDK PSSLLLPPPSPPPSQCLNF ASSPNVIYDTIFGHDIVS
Sbjct: 121 CPQIHSDDK-PSSLLLPPPSPPPSQCLNFAASSPNVIYDTIFGHDIVS 167

[Close]

BLAST of Lag0040971 vs. NCBI nr
Match: XP_023536420.1 (LOB domain-containing protein 12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 330.9 bits (847), Expect = 6.5e-87
Identity = 163/167 (97.60%), Postives = 164/167 (98.20%), Query Frame = 0


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN
Sbjct: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120

Query: 121 CPQIHSDDKPPSSLLLPPPSPPPSQCLNFASSPNVIYDTIFGHDIVS 168
           CPQIHSDDKPP +LLLPPPS PPSQCLNFASSPNVIYD IFGHDIVS
Sbjct: 121 CPQIHSDDKPP-TLLLPPPSSPPSQCLNFASSPNVIYDAIFGHDIVS 166

[Close]

BLAST of Lag0040971 vs. NCBI nr
Match: XP_022957028.1 (LOB domain-containing protein 12-like [Cucurbita moschata] >KAG6600910.1 LOB domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031545.1 LOB domain-containing protein 12, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 329.3 bits (843), Expect = 1.9e-86
Identity = 162/167 (97.01%), Postives = 164/167 (98.20%), Query Frame = 0


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN
Sbjct: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120

Query: 121 CPQIHSDDKPPSSLLLPPPSPPPSQCLNFASSPNVIYDTIFGHDIVS 168
           CPQIHSD+KPP +LLLPPPS PPSQCLNFASSPNVIYD IFGHDIVS
Sbjct: 121 CPQIHSDEKPP-TLLLPPPSSPPSQCLNFASSPNVIYDAIFGHDIVS 166

[Close]

BLAST of Lag0040971 vs. NCBI nr
Match: KAA0035899.1 (LOB domain-containing protein 12-like [Cucumis melo var. makuwa] >TYK19054.1 LOB domain-containing protein 12-like [Cucumis melo var. makuwa])

HSP 1 Score: 328.9 bits (842), Expect = 2.5e-86
Identity = 165/168 (98.21%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60
           MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRG 60

Query: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120
           DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN
Sbjct: 61  DAVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPN 120

Query: 121 CPQIHSDDKPPSSLLLPPPSPPPSQCLNF-ASSPNVIYDTIFGHDIVS 168
           CPQIHSDDK  SSLLLPPPSPPPSQCLNF ASSPNVIYDTIFGHDIVS
Sbjct: 121 CPQIHSDDK-SSSLLLPPPSPPPSQCLNFAASSPNVIYDTIFGHDIVS 167

[Close]

BLAST of Lag0040971 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 212.2 bits (539), Expect = 4.4e-54
Identity = 109/134 (81.34%), Postives = 117/134 (87.31%), Query Frame = 0


Query: 3   GNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDA 62
           G+SPCASCKLLRRRCAKDCIFAPYFP DDPHKFAIVHKVFGASNVSKMLQELPV QR DA
Sbjct: 5   GSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADA 64

Query: 63  VMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDHPVFPNCP 122
           V SLV+EA+ARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ + P   +  
Sbjct: 65  VNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNE-PTLQSHH 124

Query: 123 QIHSDDKPPSSLLL 137
           Q+   D+   +LLL
Sbjct: 125 QVLELDQDHKALLL 137

[Close]

BLAST of Lag0040971 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 5.4e-44
Identity = 89/139 (64.03%), Postives = 110/139 (79.14%), Query Frame = 0


Query: 2   GGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGD 61
           G  SPCA+CKLLRRRCA+DC+F+PYFP+D+P KFA VH+VFGASNV+KMLQELP+ QRGD
Sbjct: 9   GAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGD 68

Query: 62  AVMSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQ--DHPVFP 121
           AV S+VYEA+ARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQAE++ ++++Q  + P   
Sbjct: 69  AVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTNFPGHG 128

Query: 122 NCPQIHSDDKPPSSLLLPP 139
            CP   S    PSS  + P
Sbjct: 129 LCPDSPSSSGSPSSKQVSP 147

[Close]

BLAST of Lag0040971 vs. ExPASy Swiss-Prot
Match: Q9LQR0 (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.1e-36
Identity = 73/111 (65.77%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 5   SPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVM 64
           SPCA+CK+LRRRCA+ C+ APYFP  DP KF I H+VFGASN+ K LQELP  QR DAV 
Sbjct: 32  SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 91

Query: 65  SLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDH 116
           S+VYEA AR+RDPVYGC GAI +LQ QVS+LQ QLA AQ E++ +Q Q+ +
Sbjct: 92  SMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSN 142

[Close]

BLAST of Lag0040971 vs. ExPASy Swiss-Prot
Match: Q9SK08 (LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 SV=2)

HSP 1 Score: 152.5 bits (384), Expect = 4.1e-36
Identity = 72/109 (66.06%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 5   SPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVM 64
           SPCA+CK+LRRRCA  C+ APYFP  DP KF I H+VFGASN+ K LQELP  QR DAV 
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 65  SLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQ 114
           S+VYEA AR+RDPVYGC GAI +LQ QVS+LQ QLA  Q E++ +Q+Q+
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQR 162

[Close]

BLAST of Lag0040971 vs. ExPASy Swiss-Prot
Match: Q9SA51 (LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 5.4e-36
Identity = 73/107 (68.22%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 5   SPCASCKLLRRRCAKD-CIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAV 64
           SPCA CKLLRR+C KD C+FAPYFP+ +P+KFAIVHK+FGASNV+KMLQEL    R DAV
Sbjct: 13  SPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAV 72

Query: 65  MSLVYEASARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQ 111
            S+VYEA+AR++DPVYGCVG IS L  Q+  LQ QLA AQAE++ I+
Sbjct: 73  DSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIR 119

The following BLAST results are available for this feature:

BLAST of Lag0040971 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893139.1	2.0e-88	98.80	LOB domain-containing protein 12-like [Benincasa hispida]	[more]
XP_004148190.1	2.9e-87	98.81	LOB domain-containing protein 12 [Cucumis sativus] >KGN50694.1 hypothetical prot...	[more]
XP_023536420.1	6.5e-87	97.60	LOB domain-containing protein 12-like [Cucurbita pepo subsp. pepo]	[more]
XP_022957028.1	1.9e-86	97.01	LOB domain-containing protein 12-like [Cucurbita moschata] >KAG6600910.1 LOB dom...	[more]
KAA0035899.1	2.5e-86	98.21	LOB domain-containing protein 12-like [Cucumis melo var. makuwa] >TYK19054.1 LOB...	[more]

BLAST of Lag0040971 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LBW3	4.4e-54	81.34	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
Q9SHE9	5.4e-44	64.03	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
Q9LQR0	1.1e-36	65.77	LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=...	[more]
Q9SK08	4.1e-36	66.06	LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 S...	[more]
Q9SA51	5.4e-36	68.22	LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 85..105
None	No IPR available	PANTHER	PTHR31301:SF97	LOB DOMAIN-CONTAINING PROTEIN 12-LIKE	coord: 2..116
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 2..116
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 6..103 e-value: 3.7E-42 score: 142.9
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 5..106 score: 26.690853

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040971.1	Lag0040971.1	mRNA