Lag0040957 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040957
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	protein IQ-DOMAIN 1-like
Location	chr13: 10212624 .. 10216421 (-)
RNA-Seq Expression	Lag0040957
Synteny	Lag0040957

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGCGATCAAAGAGGAGAGGGCGGTGGCAGCGCTTCCTGTTCTTGACCGAGAGGGAGAAAGTGACGGCGGATAGCGAGAAAGACAAGTGAGGGAGAGAGAGAGTTCGTGAGGGAGAGGCAACGTGAGAGATAGAGATGGAAGGGTTTTCAAAAAATTGATTTTCCTTTTTTTTTTTTTTTTCGCAACCTACATTATTACCTTTTTTTTTTTTTTTTAAATCGACCTACATTATTACTTAAGTCTCCTTTTTTAATAGATGACAATTAATTAAAGTCATAGATTTATGACTTTGAAAAAATGTCATAAATTTTCCAAAATACGAGAATCTCTGTTTTTTTCCATAAAAAACGCGCATTTTACATTTTATGACATTTTTTCATCTCCCTTAACTTTACTTTTTTTTTTCCCTTGGTGTCATAGATTCTCAATTTTGTAGTAGTGGTTTGAACAAACTTTCTTATAGTTTTATGCAACGTTTACCTTTTCAAAAGTAATCTCAAACTCATTTGAAGTCTTTTATTACCTATGTTATGCTAGCTAGCTCCAACATGAGATTATGGTCCGTAAATAGGAATTTAGATTGTACACACAAAAGGTTGGGATTTAGAATATGAATGTAACTATCCTGTGATCGTGAAATTGATAATCTAAACTCATTTCCATTTTTCAACCACAATTTTGTCTTAATATGCCAAATTAAAATTCACATTTTTTAACCATCATGAAAACCAAATGGATTCCAATTCCATGATATTGGAATTCTCCACTGTGTTCTTAGTTCTTAAGAATGTCAACGATCATGTCTAATAGCCTAATCAAGTGATAAAGAATATACATTAAAACTTTTTTAAACATATAGATGATTAAACTGAGACAAACTGAGACAGATGATTCGAACCAACGACTTAAAGATGGCTATTTGGAATTTTCCAACTACAGTCCTCCGCTCTACCAATTGAGCTAAAGTCAGATGTTGTTTAATTAAATAAAATAAAAATTAAATTATTAAAAATACCTCAAAAGTTTCATTTTAGCCCTTGAAATTTGAATTTTGTTTCAAAATGATCTTTGGATACATTTGTTGTTAAATTTATAGATGATAACAATGATGCATTTGCTTGTGTTTTTATTGTTTTTTCCACATAGCGTTCAAATCAATTCACATAAACAGCAAAACATATGTACACACATCATTTTCGTTTTGTCCATTAAATTAACCAAAAAAGTCCTTCAAGAATTGTTTTGAAACAAAACTTCAAACTTCAAGACTAAAATATCAGTTTTTGTATGTTTTCTACCTACGACTTAATATAAAGTATCTTCCTTCTAAAAAAAAAATTGAAAATGTTTGAGTATAATTGAAACCAACTCCATATTTCAGGAATATTTTTAATAATTTAACCTTAAAATAAACCACCCTCATCAATCTCAAGTCAAGGGAGTCATTTCCATTGAAATATCTTACTAAGTATCCATGATTTAATGTTCCGATTATTGAACTAATTATTACATATATAATACATAAAAATGTTCGTTGTTTCTTAGGATTTGGAGAACCAAAAATCACCATTATCATTAGCTGCTTGAGGTCAAAGATTCGAATCACTCATCCAAATTGTTATTGAATTAGAAAAGGGGAGGGGGCAAAAATGTTATTCCATCACTTGAATTATGTTGTTTTGTGACTTTTGTCATAGTTTATATTTTCTTAAAGATGGTATAAAATTTCTTCTCTTACAAAAAAAAAAAAATCCGACGTGTCACCCCATAATTTCATACTTATTTAGAATTGAGTGAAATTAAAGATAAATATTCAAAGTTTGTGAAGGTTTTCGACGAAAAATTCAAAGAGATTTACCATAAAAAAGGGGAAAAAATCAAAGATATATATTTTTTTTTAATAGAGGGATGATCATTTTCTTTCTTTTTCTCTTTGATCGAACAATATTTAGAGATAGATAATTCGAACATGTAATCCCTTGATCTAGAGTATGTGTAAAATTTTGAGATTTTTGGATGATCCTACACCAAATTCGAATCATATACATCAATATTTTATATATTAAAATATATTTAAATTATAAAAATCTAATTTAAATTTCATATGATATATATCTAACTTTTATATATATATATATATATATATATATATATATATATATATATATATTTCAACCTAAAATCTTTGACCTCAAGCAGCTATATTTCAACCATAGCTGATAATTCTCTTGTCTAAAAGATACCAAATGACTCATCTACCTTAAAATGTTGTTGTTGTTTTTTTTTTAGAAAAAAACAAAATCATAAATAATAAAAAGAAAAGGGATTAAGAAATTCTAAAATAAATAATAACTAAATTTCAAAATAATAATAATAATAATAATAAGGGAAAAATACACTTTTGGTCCCTGAGGTTTGGGTTAAGTGACACTTGGGTCCCTGAGTTTTCAAACTCAACAAAAATACCCCTGAGGTTTGAGATAAGGAGCACTTTGGTCCCTGCCGTCAAATTTTCTGTTAACTTTTAACGGCTGCTGACGTGACACTATTATTTTAATATAAAAAATTATTTTTGTTTTATTTTTTAAATAAAAAATATTAAAAAATTAAAAAATTAATATTTAATTATTTTTGTTATTCTTTCTCTCCTTCTCTCATCTTCTTCTTCTCCATCTTCCTTCTTCTCCATCTTCTCCCTTCTCCTTCTTCTTCTTCCTAAGTCCGGCGACCGGCGACCACCACACGCCGCCGCCGCCGCTGGCCGCCGGCCGCCGGCGACTGATTTTTTTTTTTTTTTTTTTCTTTCTTCTTTCTTCTTCTTCCTTTCTTTCTTATTCTCTTCTTTTTCTTCAATGTTTTTTTAAAAAAAAAAATATAAAAGGGAGGGAGGAGGGGCCTCCCTCCTTCTCCTTTTCCGGCCGGAAACAGAGGAGGAGTTCCTATTTTCATTCCGATGGCTAATGGCGTTCTCTATTTTTTGGGGTTTTATTTTTGTGATTCTGTAGGAGAAAGTTGGAGATCGGAGCAAGAAGAAATGGAGTATATCTGATGGGTATGGATCTTCGGGTAAAATGACGAAGAGGGAGTTTGTTGAATCAACAGAATCGCACGATTCGAAGCTTTTGGCTAATGCTGTGGCTGCAGTTGCTCGAGCTCCATTGAAGGATTTTGTGGTGGTGAGGCGGCATTGGGCCGCCGTTCGAATCCAGACGGCATTTCGTGGCTTCTTGGTATAAAGAACTTTTGCCCCTTTTTATTCTCTTCAATTTCCCTGTGATTTTCCCCCACTTCTTCAAATCTGTAATAATGGATCTGGAAATCTGCACTTTCAGGAATCCCTTTTAATCTGGTCTGTTGTACAGTTTGTTTTAGTGAAAATTGAATGGAGTGACTATGTTTGTGGTTAGATTAAGCTGAATATTTGATACCCTTAGTCAAGTTCATGAGTAAAAATTGTTTTTTTCCTCCTTAAAGAATATCTGAACTTGGGAGCTGGATGCAATTTGATTTGAACTCCTCCTCTGTTTCCGGCCGGAAAAGGAGGAGGAGGGAGGCCCCTCCTCCCTCCCTTTTCTATTTTTTTTTTAAAAAAACATTGAAGAAAAAGAAGAGAAGAAGAAAGAAAGGAAGAAGAAGAAAGAAGGAAAAAAAAAAAAAAATCAGTCGCCGGCGGCGGCGGCGGCGTGTGGTGGTCGCCGGTCGCCGGACTTAGGAAGAAGAAGAAGGAGAAGGGAGAAGATGGAGAAAAGGAAGATGGAGAAGAAGAAGATGAGAGAGAAGGAGAGAAAGAATAA

mRNA sequence

ATGACGCGATCAAAGAGGAGAGGGCGGTGGCAGCGCTTCCTGTTCTTGACCGAGAGGGAGAAAGTGACGGCGGATAGCGAGAAAGACAACTCCAACATGAGATTATGGTCCGAGAAAGTTGGAGATCGGAGCAAGAAGAAATGGAGTATATCTGATGGGTATGGATCTTCGGGTAAAATGACGAAGAGGGAGTTTGTTGAATCAACAGAATCGCACGATTCGAAGCTTTTGGCTAATGCTGTGGCTGCAGTTGCTCGAGCTCCATTGAAGGATTTTGTGGTGGTGAGGCGGCATTGGGCCGCCGTTCGAATCCAGACGGCATTTCGTGGCTTCTTGGAATCCCTTTTAATCTGGTCTGTTGTACAGTTTGTTTTAGTGAAAATTGAATGGAGTGACTATGTTTGTGTCGCCGGCGGCGGCGGCGGCGTGTGGTGGTCGCCGGTCGCCGGACTTAGGAAGAAGAAGAAGGAGAAGGGAGAAGATGGAGAAAAGGAAGATGGAGAAGAAGAAGATGAGAGAGAAGGAGAGAAAGAATAA

Coding sequence (CDS)

ATGACGCGATCAAAGAGGAGAGGGCGGTGGCAGCGCTTCCTGTTCTTGACCGAGAGGGAGAAAGTGACGGCGGATAGCGAGAAAGACAACTCCAACATGAGATTATGGTCCGAGAAAGTTGGAGATCGGAGCAAGAAGAAATGGAGTATATCTGATGGGTATGGATCTTCGGGTAAAATGACGAAGAGGGAGTTTGTTGAATCAACAGAATCGCACGATTCGAAGCTTTTGGCTAATGCTGTGGCTGCAGTTGCTCGAGCTCCATTGAAGGATTTTGTGGTGGTGAGGCGGCATTGGGCCGCCGTTCGAATCCAGACGGCATTTCGTGGCTTCTTGGAATCCCTTTTAATCTGGTCTGTTGTACAGTTTGTTTTAGTGAAAATTGAATGGAGTGACTATGTTTGTGTCGCCGGCGGCGGCGGCGGCGTGTGGTGGTCGCCGGTCGCCGGACTTAGGAAGAAGAAGAAGGAGAAGGGAGAAGATGGAGAAAAGGAAGATGGAGAAGAAGAAGATGAGAGAGAAGGAGAGAAAGAATAA

Protein sequence

MTRSKRRGRWQRFLFLTEREKVTADSEKDNSNMRLWSEKVGDRSKKKWSISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFVVVRRHWAAVRIQTAFRGFLESLLIWSVVQFVLVKIEWSDYVCVAGGGGGVWWSPVAGLRKKKKEKGEDGEKEDGEEEDEREGEKE

Homology

[Close]

BLAST of Lag0040957 vs. NCBI nr
Match: XP_038898204.1 (protein gar2-like [Benincasa hispida])

HSP 1 Score: 132.9 bits (333), Expect = 2.8e-27
Identity = 69/79 (87.34%), Postives = 74/79 (93.67%), Query Frame = 0


Query: 38  EKVGDRSKKKW----SISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFV 97
           EKVGDR+KKKW    S+SDGYGSSGK+TK+EFVESTESHDSKLLANAVAAVARAPLKDFV
Sbjct: 24  EKVGDRNKKKWRLWRSVSDGYGSSGKITKKEFVESTESHDSKLLANAVAAVARAPLKDFV 83

Query: 98  VVRRHWAAVRIQTAFRGFL 113
           VVR+HWAAVRIQT FRGFL
Sbjct: 84  VVRQHWAAVRIQTTFRGFL 102

[Close]

BLAST of Lag0040957 vs. NCBI nr
Match: ADN34116.1 (heterogeneous nuclear ribonucleoprotein a1 [Cucumis melo subsp. melo])

HSP 1 Score: 129.8 bits (325), Expect = 2.3e-26
Identity = 68/79 (86.08%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 38  EKVGDRSKKKW----SISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFV 97
           EKVGDRSKKKW    S+SDGYGSSGK+TK EF ESTESHDSKLLANAVAAVARAPL+DFV
Sbjct: 24  EKVGDRSKKKWRLWRSVSDGYGSSGKITKGEFAESTESHDSKLLANAVAAVARAPLRDFV 83

Query: 98  VVRRHWAAVRIQTAFRGFL 113
           VVR+HWAAVRIQT FRGFL
Sbjct: 84  VVRQHWAAVRIQTTFRGFL 102

[Close]

BLAST of Lag0040957 vs. NCBI nr
Match: TYK03903.1 (protein IQ-DOMAIN 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 2.3e-26
Identity = 68/79 (86.08%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 38  EKVGDRSKKKW----SISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFV 97
           EKVGDRSKKKW    S+SDGYGSSGK+TK EF ESTESHDSKLLANAVAAVARAPL+DFV
Sbjct: 24  EKVGDRSKKKWRLWRSVSDGYGSSGKITKGEFAESTESHDSKLLANAVAAVARAPLRDFV 83

Query: 98  VVRRHWAAVRIQTAFRGFL 113
           VVR+HWAAVRIQT FRGFL
Sbjct: 84  VVRQHWAAVRIQTTFRGFL 102

[Close]

BLAST of Lag0040957 vs. NCBI nr
Match: XP_008462345.1 (PREDICTED: protein IQ-DOMAIN 1-like [Cucumis melo])

HSP 1 Score: 129.8 bits (325), Expect = 2.3e-26
Identity = 68/79 (86.08%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 38  EKVGDRSKKKW----SISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFV 97
           EKVGDRSKKKW    S+SDGYGSSGK+TK EF ESTESHDSKLLANAVAAVARAPL+DFV
Sbjct: 24  EKVGDRSKKKWRLWRSVSDGYGSSGKITKGEFAESTESHDSKLLANAVAAVARAPLRDFV 83

Query: 98  VVRRHWAAVRIQTAFRGFL 113
           VVR+HWAAVRIQT FRGFL
Sbjct: 84  VVRQHWAAVRIQTTFRGFL 102

[Close]

BLAST of Lag0040957 vs. NCBI nr
Match: XP_011659642.1 (protein gar2 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 2.3e-26
Identity = 69/79 (87.34%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 38  EKVGDRSKKKW----SISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFV 97
           EKVGDRSKKKW    S+SDGYGSSGK+TKR F ESTESHDSKLLANAVAAVARAPLKDFV
Sbjct: 24  EKVGDRSKKKWRLWRSLSDGYGSSGKITKRGFSESTESHDSKLLANAVAAVARAPLKDFV 83

Query: 98  VVRRHWAAVRIQTAFRGFL 113
           VVR+HWAAVRIQT FRGFL
Sbjct: 84  VVRQHWAAVRIQTTFRGFL 102

[Close]

BLAST of Lag0040957 vs. ExPASy Swiss-Prot
Match: Q9CAI2 (Protein IQ-DOMAIN 8 OS=Arabidopsis thaliana OX=3702 GN=IQD8 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.8e-06
Identity = 45/107 (42.06%), Postives = 57/107 (53.27%), Query Frame = 0


Query: 8   GRWQRFLFLTEREKVTADSEKD-NSNMRLW-SEKVGDRSKKKWSISDGYGSSGKMTKREF 67
           G W + L +T ++ +T D EK+     +LW +   G  S  K   S G GS G  +    
Sbjct: 5   GNWIKSL-ITNKKNITDDQEKNIKKKWKLWRTSSEGLISSSKGFKSRG-GSYGTPSLGSD 64

Query: 68  VESTESHDSKLLANAVAAVARAPLKDFVVVRRHWAAVRIQTAFRGFL 113
             S  + DS     AVAAV RAP KDF +V+R WAA RIQ AFR FL
Sbjct: 65  PPSFSADDS--FTAAVAAVIRAPPKDFFLVKREWAATRIQAAFRAFL 107

[Close]

BLAST of Lag0040957 vs. ExPASy Swiss-Prot
Match: O64852 (Protein IQ-DOMAIN 6 OS=Arabidopsis thaliana OX=3702 GN=IQD6 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.4e-05
Identity = 35/78 (44.87%), Postives = 41/78 (52.56%), Query Frame = 0


Query: 41  GDRSKKKW------SISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFVV 100
           G+   KKW      S+    G  GK       +S     S + + AVA V RAP KDF  
Sbjct: 25  GNGKNKKWKLWRTTSVDSWKGFRGKHRS----DSDGVDSSTVYSAAVATVLRAPPKDFKA 84

Query: 101 VRRHWAAVRIQTAFRGFL 113
           VR  WAA+RIQTAFRGFL
Sbjct: 85  VREEWAAIRIQTAFRGFL 98

[Close]

BLAST of Lag0040957 vs. ExPASy Swiss-Prot
Match: Q2NND9 (Protein IQ-DOMAIN 7 OS=Arabidopsis thaliana OX=3702 GN=IQD7 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.0e-05
Identity = 32/86 (37.21%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 38  EKVGDR-SKKKWSI----SDGYGSSGKMTKREFVESTESHD------SKLLANAVAAVAR 97
           EK+ D+ SKKKW +    S+   SS   ++  +  S+   +       +    A+AA+ R
Sbjct: 23  EKLSDKSSKKKWKLWRISSESLASSSFKSRGSYAASSLGSELPSFSADEAFTTAMAALIR 82

Query: 98  APLKDFVVVRRHWAAVRIQTAFRGFL 113
           AP +DF++V+R WA+ RIQ AFR FL
Sbjct: 83  APPRDFLMVKREWASTRIQAAFRAFL 108

The following BLAST results are available for this feature:

BLAST of Lag0040957 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898204.1	2.8e-27	87.34	protein gar2-like [Benincasa hispida]	[more]
ADN34116.1	2.3e-26	86.08	heterogeneous nuclear ribonucleoprotein a1 [Cucumis melo subsp. melo]	[more]
TYK03903.1	2.3e-26	86.08	protein IQ-DOMAIN 1-like [Cucumis melo var. makuwa]	[more]
XP_008462345.1	2.3e-26	86.08	PREDICTED: protein IQ-DOMAIN 1-like [Cucumis melo]	[more]
XP_011659642.1	2.3e-26	87.34	protein gar2 [Cucumis sativus]	[more]

BLAST of Lag0040957 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAI2	2.8e-06	42.06	Protein IQ-DOMAIN 8 OS=Arabidopsis thaliana OX=3702 GN=IQD8 PE=1 SV=1	[more]
O64852	1.4e-05	44.87	Protein IQ-DOMAIN 6 OS=Arabidopsis thaliana OX=3702 GN=IQD6 PE=1 SV=1	[more]
Q2NND9	4.0e-05	37.21	Protein IQ-DOMAIN 7 OS=Arabidopsis thaliana OX=3702 GN=IQD7 PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 163..178
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..178
None	No IPR available	PANTHER	PTHR32295	IQ-DOMAIN 5-RELATED	coord: 37..114
None	No IPR available	PANTHER	PTHR32295:SF126	PROTEIN IQ-DOMAIN 1-LIKE	coord: 37..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040957.1	Lag0040957.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005516	calmodulin binding
molecular_function	GO:0003723	RNA binding