Lag0040950 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040950
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	non-classical arabinogalactan protein 30
Location	chr13: 10131211 .. 10131711 (-)
RNA-Seq Expression	Lag0040950
Synteny	Lag0040950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCCAAAAACCTCCTCTCCCTCTGCCTCGTCGTCCTCCTCCTCCACATCGCCGCCGCCGACCCGGTCCGACCGGCCCACAAACCCGTGGCGGTGGCGGTGGAGGGCATGGTGTACTGCCAAAGCTGCCGGAAGATCGGAAGCTGGTCGCTGAGCGGCGGCAAGGCGATCGGCGGAGCGAAGATCAGCGTGATTTGCAAGAATCACAACAACCAAGTGAGCTTCTACAAGGTGTTTGAAACGAACCAAAACGGGTATTTCTACGCGGAGCTGGTCGGCTACAAAATGGCCCACCCGGTTCTCGACCACCCGCTGCAGGCCTGCAAAGTCAAGCCCGTCTCTTCCCCTCTGCCCGACTGCAACCTTCTCACCAATGTCAACTACGGCCTCGCCGGCGCGCCGCTCCGCTACGAGAAGAAGCTCCTCGTCGGCCCGCATTATCGGGCCGCCGTTTACGCCGCCGGGCCTCTCGCTTTCCACCCGGAGAAATGTCTCTAG

mRNA sequence

ATGGCAGCCAAAAACCTCCTCTCCCTCTGCCTCGTCGTCCTCCTCCTCCACATCGCCGCCGCCGACCCGGTCCGACCGGCCCACAAACCCGTGGCGGTGGCGGTGGAGGGCATGGTGTACTGCCAAAGCTGCCGGAAGATCGGAAGCTGGTCGCTGAGCGGCGGCAAGGCGATCGGCGGAGCGAAGATCAGCGTGATTTGCAAGAATCACAACAACCAAGTGAGCTTCTACAAGGTGTTTGAAACGAACCAAAACGGGTATTTCTACGCGGAGCTGGTCGGCTACAAAATGGCCCACCCGGTTCTCGACCACCCGCTGCAGGCCTGCAAAGTCAAGCCCGTCTCTTCCCCTCTGCCCGACTGCAACCTTCTCACCAATGTCAACTACGGCCTCGCCGGCGCGCCGCTCCGCTACGAGAAGAAGCTCCTCGTCGGCCCGCATTATCGGGCCGCCGTTTACGCCGCCGGGCCTCTCGCTTTCCACCCGGAGAAATGTCTCTAG

Coding sequence (CDS)

ATGGCAGCCAAAAACCTCCTCTCCCTCTGCCTCGTCGTCCTCCTCCTCCACATCGCCGCCGCCGACCCGGTCCGACCGGCCCACAAACCCGTGGCGGTGGCGGTGGAGGGCATGGTGTACTGCCAAAGCTGCCGGAAGATCGGAAGCTGGTCGCTGAGCGGCGGCAAGGCGATCGGCGGAGCGAAGATCAGCGTGATTTGCAAGAATCACAACAACCAAGTGAGCTTCTACAAGGTGTTTGAAACGAACCAAAACGGGTATTTCTACGCGGAGCTGGTCGGCTACAAAATGGCCCACCCGGTTCTCGACCACCCGCTGCAGGCCTGCAAAGTCAAGCCCGTCTCTTCCCCTCTGCCCGACTGCAACCTTCTCACCAATGTCAACTACGGCCTCGCCGGCGCGCCGCTCCGCTACGAGAAGAAGCTCCTCGTCGGCCCGCATTATCGGGCCGCCGTTTACGCCGCCGGGCCTCTCGCTTTCCACCCGGAGAAATGTCTCTAG

Protein sequence

MAAKNLLSLCLVVLLLHIAAADPVRPAHKPVAVAVEGMVYCQSCRKIGSWSLSGGKAIGGAKISVICKNHNNQVSFYKVFETNQNGYFYAELVGYKMAHPVLDHPLQACKVKPVSSPLPDCNLLTNVNYGLAGAPLRYEKKLLVGPHYRAAVYAAGPLAFHPEKCL

Homology

[Close]

BLAST of Lag0040950 vs. NCBI nr
Match: XP_038893345.1 (non-classical arabinogalactan protein 30 [Benincasa hispida])

HSP 1 Score: 296.2 bits (757), Expect = 1.8e-76
Identity = 139/166 (83.73%), Postives = 156/166 (93.98%), Query Frame = 0


Query: 1   MAAKNLLSLCLVVLLLHIAAADPVRPAHKPVAVAVEGMVYCQSCRKIGSWSLSGGKAIGG 60
           M+AKNLLSL L++LLL IAAAD  RPA+KP++VA+EG+VYCQSC+K+G+WSLSG KAI G
Sbjct: 1   MSAKNLLSLSLLLLLLCIAAADTTRPAYKPISVAIEGLVYCQSCQKLGTWSLSGAKAISG 60

Query: 61  AKISVICKNHNNQVSFYKVFETNQNGYFYAELVGYKMAHPVLDHPLQACKVKPVSSPLPD 120
           AKISVICKNHNNQV+FYKV+ETN++GYFYAELVGYKM HPVLDHPLQACKVKPV SPL D
Sbjct: 61  AKISVICKNHNNQVNFYKVYETNKDGYFYAELVGYKMNHPVLDHPLQACKVKPVYSPLSD 120

Query: 121 CNLLTNVNYGLAGAPLRYEKKLLVGPHYRAAVYAAGPLAFHPEKCL 167
           CNLLTN+NYGL GAPLRYEKKL+VGPHYRAAVYAAGPLAFHPEKCL
Sbjct: 121 CNLLTNLNYGLVGAPLRYEKKLVVGPHYRAAVYAAGPLAFHPEKCL 166

[Close]

BLAST of Lag0040950 vs. NCBI nr
Match: XP_023541968.1 (non-classical arabinogalactan protein 30 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 294.3 bits (752), Expect = 6.7e-76
Identity = 138/166 (83.13%), Postives = 155/166 (93.37%), Query Frame = 0


Query: 1   MAAKNLLSLCLVVLLLHIAAADPVRPAHKPVAVAVEGMVYCQSCRKIGSWSLSGGKAIGG 60
           MAAK+LLSL L++LLLHIAAA+P RP  KPVA+AVEGMVYCQ+C+KIGSWSL+G K I G
Sbjct: 1   MAAKSLLSLSLLLLLLHIAAANPPRPTPKPVAIAVEGMVYCQNCQKIGSWSLTGAKPIAG 60

Query: 61  AKISVICKNHNNQVSFYKVFETNQNGYFYAELVGYKMAHPVLDHPLQACKVKPVSSPLPD 120
           AKISVICKNHNNQVSFYKV+ETN+ GYFYAELVGYKM HPVLDHPLQACKVKP+SSPLPD
Sbjct: 61  AKISVICKNHNNQVSFYKVYETNKYGYFYAELVGYKMPHPVLDHPLQACKVKPISSPLPD 120

Query: 121 CNLLTNVNYGLAGAPLRYEKKLLVGPHYRAAVYAAGPLAFHPEKCL 167
           C+LLTN+NYG+AGAPLRY+KK +VGP YRAAVY+AGPLAFHPEKCL
Sbjct: 121 CDLLTNLNYGIAGAPLRYDKKFVVGPKYRAAVYSAGPLAFHPEKCL 166

[Close]

BLAST of Lag0040950 vs. NCBI nr
Match: XP_022996537.1 (non-classical arabinogalactan protein 30 [Cucurbita maxima])

HSP 1 Score: 291.2 bits (744), Expect = 5.7e-75
Identity = 137/166 (82.53%), Postives = 155/166 (93.37%), Query Frame = 0


Query: 1   MAAKNLLSLCLVVLLLHIAAADPVRPAHKPVAVAVEGMVYCQSCRKIGSWSLSGGKAIGG 60
           MAAK+LLSL L++LLLHIAAA+P RP  KPVA+AVEGMVYCQ+C+KIGSWSL+G KAI G
Sbjct: 34  MAAKSLLSLSLLLLLLHIAAANPPRPTPKPVAIAVEGMVYCQNCQKIGSWSLTGAKAIAG 93

Query: 61  AKISVICKNHNNQVSFYKVFETNQNGYFYAELVGYKMAHPVLDHPLQACKVKPVSSPLPD 120
           AKISVICKNHNNQVSFYKV+ET++ GYFYAELVGYKM HPVLDHPLQACKVKP+SSPL D
Sbjct: 94  AKISVICKNHNNQVSFYKVYETDKYGYFYAELVGYKMPHPVLDHPLQACKVKPISSPLSD 153

Query: 121 CNLLTNVNYGLAGAPLRYEKKLLVGPHYRAAVYAAGPLAFHPEKCL 167
           C+LLTN+NYG+AGAPLRY+KK +VGP YRAAVY+AGPLAFHPEKCL
Sbjct: 154 CDLLTNLNYGIAGAPLRYDKKFVVGPKYRAAVYSAGPLAFHPEKCL 199

[Close]

BLAST of Lag0040950 vs. NCBI nr
Match: KAG6599980.1 (Non-classical arabinogalactan protein 30, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030660.1 Non-classical arabinogalactan protein 30, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 291.2 bits (744), Expect = 5.7e-75
Identity = 137/166 (82.53%), Postives = 154/166 (92.77%), Query Frame = 0


Query: 1   MAAKNLLSLCLVVLLLHIAAADPVRPAHKPVAVAVEGMVYCQSCRKIGSWSLSGGKAIGG 60
           MAAK+LLSL L++LLLHIAAA+P RP  KPVA+AVEGMVYCQ+C+KIGSWSL+G K I G
Sbjct: 1   MAAKSLLSLSLLLLLLHIAAANPPRPTPKPVAIAVEGMVYCQNCQKIGSWSLTGAKPIAG 60

Query: 61  AKISVICKNHNNQVSFYKVFETNQNGYFYAELVGYKMAHPVLDHPLQACKVKPVSSPLPD 120
           AKISVICKNHNNQVSFYKV+ETN+ GYFYAELVGYKM HPVLDHPLQACKVKP+SSPL D
Sbjct: 61  AKISVICKNHNNQVSFYKVYETNKYGYFYAELVGYKMPHPVLDHPLQACKVKPISSPLSD 120

Query: 121 CNLLTNVNYGLAGAPLRYEKKLLVGPHYRAAVYAAGPLAFHPEKCL 167
           C+LLTN+NYG+AGAPLRY+KK +VGP YRAAVY+AGPLAFHPEKCL
Sbjct: 121 CDLLTNLNYGIAGAPLRYDKKFVVGPKYRAAVYSAGPLAFHPEKCL 166

[Close]

BLAST of Lag0040950 vs. NCBI nr
Match: XP_022942759.1 (non-classical arabinogalactan protein 30 [Cucurbita moschata])

HSP 1 Score: 289.3 bits (739), Expect = 2.2e-74
Identity = 136/166 (81.93%), Postives = 153/166 (92.17%), Query Frame = 0


Query: 1   MAAKNLLSLCLVVLLLHIAAADPVRPAHKPVAVAVEGMVYCQSCRKIGSWSLSGGKAIGG 60
           M AK+LLSL L++LLLHIAAA+P RP  KPVA+AVEGMVYCQ+C+KIGSWSL+G K I G
Sbjct: 34  MEAKSLLSLSLLLLLLHIAAANPPRPTPKPVAIAVEGMVYCQNCQKIGSWSLTGAKPIAG 93

Query: 61  AKISVICKNHNNQVSFYKVFETNQNGYFYAELVGYKMAHPVLDHPLQACKVKPVSSPLPD 120
           AKISVICKNHNNQVSFYKV+ETN+ GYFYAELVGYKM HPVLDHPLQACKVKP+SSPL D
Sbjct: 94  AKISVICKNHNNQVSFYKVYETNKYGYFYAELVGYKMPHPVLDHPLQACKVKPISSPLSD 153

Query: 121 CNLLTNVNYGLAGAPLRYEKKLLVGPHYRAAVYAAGPLAFHPEKCL 167
           C+LLTN+NYG+AGAPLRY+KK +VGP YRAAVY+AGPLAFHPEKCL
Sbjct: 154 CDLLTNLNYGIAGAPLRYDKKFVVGPKYRAAVYSAGPLAFHPEKCL 199

[Close]

BLAST of Lag0040950 vs. ExPASy Swiss-Prot
Match: Q03211 (Pistil-specific extensin-like protein OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.5e-06
Identity = 37/115 (32.17%), Postives = 53/115 (46.09%), Query Frame = 0


Query: 23  PVRPAHKPVAVAVEGMVYCQSCRKIGSWSLSGGKAIGGAKISVICKNHNNQVSFYKVFET 82
           P+ P  KP  V+  G+VYC+SC   G  +L     + GA + +IC      V +     T
Sbjct: 281 PLPPLGKPPIVS--GLVYCKSCNSYGVPTLLNASLLQGAVVKLICYGKKTMVQW---ATT 340

Query: 83  NQNGYFYAELVGYKMAHPVLDHPLQACKVKPVSSPLPDCNLLTNVNYGLAGAPLR 138
           +  G F        M   +    +  CKV  V SP P+CN+ TN N G +G  L+
Sbjct: 341 DNKGEFRI------MPKSLTTADVGKCKVYLVKSPNPNCNVPTNFNGGKSGGLLK 384

[Close]

BLAST of Lag0040950 vs. ExPASy Swiss-Prot
Match: O81417 (Protein SEED AND ROOT HAIR PROTECTIVE PROTEIN OS=Arabidopsis thaliana OX=3702 GN=SRPP PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.4e-04
Identity = 43/150 (28.67%), Postives = 68/150 (45.33%), Query Frame = 0


Query: 21  ADPVRPAHKPVAVAVEGMVYCQSCRKIGSWSLSGGKA--IGGAKISVICKN---HNNQVS 80
           ADP     K + +AVEG++ C+          SGGK   I GA   + C     + N++ 
Sbjct: 30  ADP--ETGKLIPIAVEGIIKCK----------SGGKTYPIQGATARIACVKVDAYGNELV 89

Query: 81  FYKVF--ETNQNGYFYAELVGYKMAHPVLDHPLQACKVKPVSSPLPDCNLLTNVNYGLAG 140
              +   +T+  GYF A +   ++        +  CK     SPL DC+  T+VN G+ G
Sbjct: 90  PISILSSKTDAKGYFIATIFPSQLR---AGRTVTKCKTYLYKSPLADCDFPTDVNKGVRG 149

Query: 141 APLRYEKKLLVGPHYRAAVYAAGPLAFHPE 164
            PL    ++L    ++  +Y AGP  +  E
Sbjct: 150 QPLS-TYRILQDKSFK--LYWAGPFFYTSE 161

The following BLAST results are available for this feature:

BLAST of Lag0040950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893345.1	1.8e-76	83.73	non-classical arabinogalactan protein 30 [Benincasa hispida]	[more]
XP_023541968.1	6.7e-76	83.13	non-classical arabinogalactan protein 30 [Cucurbita pepo subsp. pepo]	[more]
XP_022996537.1	5.7e-75	82.53	non-classical arabinogalactan protein 30 [Cucurbita maxima]	[more]
KAG6599980.1	5.7e-75	82.53	Non-classical arabinogalactan protein 30, partial [Cucurbita argyrosperma subsp....	[more]
XP_022942759.1	2.2e-74	81.93	non-classical arabinogalactan protein 30 [Cucurbita moschata]	[more]

BLAST of Lag0040950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q03211	1.5e-06	32.17	Pistil-specific extensin-like protein OS=Nicotiana tabacum OX=4097 PE=2 SV=1	[more]
O81417	2.4e-04	28.67	Protein SEED AND ROOT HAIR PROTECTIVE PROTEIN OS=Arabidopsis thaliana OX=3702 GN...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF01190	Pollen_Ole_e_1	coord: 35..133 e-value: 9.6E-26 score: 90.1
None	No IPR available	PANTHER	PTHR33470	OS01G0164075 PROTEIN	coord: 8..165
None	No IPR available	PANTHER	PTHR33470:SF37	NON-CLASSICAL ARABINOGALACTAN PROTEIN 30-LIKE	coord: 8..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040950.1	Lag0040950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0071944	cell periphery