Lag0040918 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040918
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	chr13: 9777538 .. 9780011 (-)
RNA-Seq Expression	Lag0040918
Synteny	Lag0040918

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGTTGGATATGGGGTCGTTATTCTCCACTCAGATGGTGTAGTGTGGGCTGCAATGGAGTCTTACGATAAAACACCTTATACACCTTTAGCAGCAGAGGTGAATGTCATCATTCATGGTATTAGATTATTGCAACGTATGGAGGTATCAACCGCCACTGTTTTTTCGGACTCGTTATTAGCTGTCAAGATGATTCGAGGTGAGATGCTAATAACGTCTGATGTTCATCATTGGGTTATTCAAATACAAAGGATGCAGCTTTCTTTTAAAAAACTGTCCTTTGCTCACATTAACAGGGATGCCAATTTGAGAGCAGATTATTTAGTTAGGGAAGCAATAGCAAAGCGTACATCTATGCTTTGGTTAGATAATGTTCCCCAATGGTTATCTTCAATGAGTAGTCATACTCATTGCATTTGTTCTCTCTCATGTATTTGTTCTATCCAATGTAATCTGTTCTGATTAAAAAAAAATGTGACTAAAAAAATAAATGAATTCCAATCACTAAAATAATTTTTATACAAATTTTAAAAATTAAAATAGAATACTTAAAAATTAAGCAACTAAACAAAGGGCGTGTTTGGTTTAACCTTTCAAGTGTTTAATTTTGAAAAAAAAATCATTTTGAAAAAATTTCTAATGTTTGACAACCATTAAAAATGACTTATTAGAAATGAGATTGATAAATAAACAATTTTGTGACGTCCGAGGTTAGGAGGGGTACATGAATGAACTGAGATCACATCTGAATGAGAGGGATACAGAGGACATGAAAGTATGGTCAAGATAAGCTTAAAAGAATTGATAGATACTATCTATACCAACAAGGTGCACCTTCCTTTTCGATGGCTCAATCATAAGAACTTTGAAGTTAAGCGTGCTTGGCTTGAAGAAGTTCTATGTTGGGTGACCTCCTGGGAATTTTCCTATGAAGCATGTGAGTGAGGACAAAGCATGCTAAAAGGACCCGTGTTGGTTTGTGGGGACAGTCTTCGCTCTTAAAAGCAATTTAAGACGAGTATGGTGACATCGCCAAGCTGCAGGGGATGTAGGGGAATGCCGGGGATGTGTATAATAATAATCAACTATCATGGGTTGACCCTAATGGCCAATAAAGACCATAGAAAAAATAAATGGCTTAGAGGGAATGCGTTCGAGGTGTGCGTAAGCTGACCTTGGACACTCACGCATAAAAGAAAAACATTTTCAAAATCTTTTACCTTTCTAAAGAAATGATATTATTGATTTGATTTTCCCAAATTTATTCCTTCTTTTACACAAATGATATTAATTGCATTGAGAATGCAGATAACAATTTATTTTATGAAGTCCTACCAGTCATAAATTATTTGCAATCAAGTTAAAATGTTTGGTTGAATGAAAGATATTATATCGACCAAACTTACCGAGTTGAAAATTGTGTCTATTTGGTTCATATAATTCAAAAAAAATTCTAGTGAGTTAATAACCTTTTAATCTTCAGTCTAATAAATTCATGTTGTTAACTTTATTAGTTTAGTACTTATGTGGCACCATTATTGAAGATTCCACATTGAAAACATAAGTGGAGACTTCACAATTTATAAGATAGATAGTTATTTCACTCATTGTCAATTGGTTTTGAGATGGAACCTCATGTTATCTAATATGATATTAGAGCTCAAGTCTAACGACTAAGATCGATCCTCTGCAATTAGTACGCTATCTTCTCTACTTAGTGTTCTTCGTTGGAGTACCTAAAGATTGAAGCAAAAATTAATTACTTTGAAGAAGATTCCTACCCTACCTATTGTCCTTTATTCAAATTGTTCAATACTCAAGCCTAATTTTACACTCTACATTCCTAAAAGTTTTTTGTTGTTGTTATCCTTGTTTACGCCCTTATAACTCTCATAAACTCAGCTTTCGATCCATTCCATGTACCTTTTTTGGATACAATAAGAAACATAAAGGGTACAAGTGTCTTTCCCCTCATGGTCGTCTTTCTGTTTCACAACATGTTACTTACTTTTGATGAAAATTCTTTCCCTTTTGCTTTGTCTTCTTCTACTTCAAATTCTACTCCTTCATCTCAAACCACTCAAACTTTACCTTTGATTACTCCATCTTTGCCTCAATCCAATCCTTCTAATCCTTCACATATTTCTTCATCTTCTCCTTCCAATCCTGTATCGATACCAACTGCATCTGCATCCTTAAGTATGTCTGTGCCACAAGCCCTTCTAGAGAACAATGTTCAAATACCATTGGTTTCATCTATGGATGGTTCTGATTCATCAAATACCATACCTAGTGAATGTCCTCCTATTACTAATACTCATCCTATGGTCACTCGAGGGAAACATGGAATTTTTAAACCAAAAGTTCTTACTGTTACTTATCAGGAGACAAAACCCCCGACCCTAATGCTCGAGAGGCTATTAAACATGCTCATTGGTGAAAGGCAATGCAAGCTGGATATAATGCATTGA

mRNA sequence

ATGGGGGTTGGATATGGGGTCGTTATTCTCCACTCAGATGGTGTAGTGTGGGCTGCAATGGAGTCTTACGATAAAACACCTTATACACCTTTAGCAGCAGAGGTGAATGTCATCATTCATGGTATTAGATTATTGCAACGTATGGAGGTATCAACCGCCACTGTTTTTTCGGACTCGTTATTAGCTGTCAAGATGATTCGAGCTTTCGATCCATTCCATGTACCTTTTTTGGATACAATAAGAAACATAAAGGGTACAAGTGTCTTTCCCCTCATGGTCGTCTTTCTGTTTCACAACATGTTACTTACTTTTGATGAAAATTCTTTCCCTTTTGCTTTGTCTTCTTCTACTTCAAATTCTACTCCTTCATCTCAAACCACTCAAACTTTACCTTTGATTACTCCATCTTTGCCTCAATCCAATCCTTCTAATCCTTCACATATTTCTTCATCTTCTCCTTCCAATCCTGTATCGATACCAACTGCATCTGCATCCTTAAGTATGTCTGTGCCACAAGCCCTTCTAGAGAACAATGTTCAAATACCATTGGTTTCATCTATGGATGGTTCTGATTCATCAAATACCATACCTAGTGAATGTCCTCCTATTACTAATACTCATCCTATGGTCACTCGAGGGAAACATGGAATTTTTAAACCAAAAGTTCTTACTGTTACTTATCAGGAGACAAAACCCCCGACCCTAATGCTCGAGAGGCTATTAAACATGCTCATTGGTGAAAGGCAATGCAAGCTGGATATAATGCATTGA

Coding sequence (CDS)

ATGGGGGTTGGATATGGGGTCGTTATTCTCCACTCAGATGGTGTAGTGTGGGCTGCAATGGAGTCTTACGATAAAACACCTTATACACCTTTAGCAGCAGAGGTGAATGTCATCATTCATGGTATTAGATTATTGCAACGTATGGAGGTATCAACCGCCACTGTTTTTTCGGACTCGTTATTAGCTGTCAAGATGATTCGAGCTTTCGATCCATTCCATGTACCTTTTTTGGATACAATAAGAAACATAAAGGGTACAAGTGTCTTTCCCCTCATGGTCGTCTTTCTGTTTCACAACATGTTACTTACTTTTGATGAAAATTCTTTCCCTTTTGCTTTGTCTTCTTCTACTTCAAATTCTACTCCTTCATCTCAAACCACTCAAACTTTACCTTTGATTACTCCATCTTTGCCTCAATCCAATCCTTCTAATCCTTCACATATTTCTTCATCTTCTCCTTCCAATCCTGTATCGATACCAACTGCATCTGCATCCTTAAGTATGTCTGTGCCACAAGCCCTTCTAGAGAACAATGTTCAAATACCATTGGTTTCATCTATGGATGGTTCTGATTCATCAAATACCATACCTAGTGAATGTCCTCCTATTACTAATACTCATCCTATGGTCACTCGAGGGAAACATGGAATTTTTAAACCAAAAGTTCTTACTGTTACTTATCAGGAGACAAAACCCCCGACCCTAATGCTCGAGAGGCTATTAAACATGCTCATTGGTGAAAGGCAATGCAAGCTGGATATAATGCATTGA

Protein sequence

MGVGYGVVILHSDGVVWAAMESYDKTPYTPLAAEVNVIIHGIRLLQRMEVSTATVFSDSLLAVKMIRAFDPFHVPFLDTIRNIKGTSVFPLMVVFLFHNMLLTFDENSFPFALSSSTSNSTPSSQTTQTLPLITPSLPQSNPSNPSHISSSSPSNPVSIPTASASLSMSVPQALLENNVQIPLVSSMDGSDSSNTIPSECPPITNTHPMVTRGKHGIFKPKVLTVTYQETKPPTLMLERLLNMLIGERQCKLDIMH

Homology

[Close]

BLAST of Lag0040918 vs. ExPASy TrEMBL
Match: A0A445HQ35 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Glycine soja OX=3848 GN=D0Y65_034412 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.1e-04
Identity = 58/165 (35.15%), Postives = 82/165 (49.70%), Query Frame = 0


Query: 73  HVPFLDTIRNIKGTSVFPLMVVFLFHNMLLTFDENSFPFALSSSTSNSTPSSQTTQTLPL 132
           HV F D    IK  +V    V FL  +++  F+E+SFPF+++    +S PSS  +Q L L
Sbjct: 105 HVLFWDIHLIIKDINVLIQRVKFLSCDVV--FNESSFPFSVAKPHVSSPPSSVPSQLLRL 164

Query: 133 ITPSLPQSNPSNPSHISSSSPSNPVSIPTASASLSMSVPQALLENNVQIPLVSSMDGSDS 192
               +P ++P+ PSH   S  S         +SLS  V    L+        SS+  +D 
Sbjct: 165 GVLPIPTAHPNPPSHSMESIES--------LSSLSQPVELNSLQLVPTKQAASSIPANDE 224

Query: 193 S--NTIPSECPP-ITNTHPMVTRGKHGIFKPKVLTVTYQETKPPT 235
           S  +T+PS  PP   NTHPM TR K GI +P++       T  PT
Sbjct: 225 SSPSTLPSTTPPQPQNTHPMQTRSKSGIVRPRLHPTLLLTTAEPT 259

The following BLAST results are available for this feature:

BLAST of Lag0040918 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0040918 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0040918 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A445HQ35	5.1e-04	35.15	Retrovirus-related Pol polyprotein from transposon RE1 OS=Glycine soja OX=3848 G...	[more]

BLAST of Lag0040918 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 2..86 e-value: 3.5E-6 score: 29.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 186..212
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 186..205
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 3..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040918.1	Lag0040918.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding