Lag0040917 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040917
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	PHD finger protein ALFIN-LIKE 2-like
Location	chr13: 9739733 .. 9740223 (+)
RNA-Seq Expression	Lag0040917
Synteny	Lag0040917

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTAATGATCTACCAACTCTATTTGAAGTTGCGTCTGGAAGGAAAGCTGTTAAAGACAAACCCAGTATGGATAGTGGAAGTAAATCCAGAAACAGCACTAAGGTGAAGTGGTCTAGTTTTCCCCCATTTCTATCCCCATCCCCTTAATTGGAGAAAACTGCAAATTTTATTTTATTTTGTACTTTTTCCTTTGACTGAGAACTTCAGGATAGCAACCAATTTTATCTTTGCAGAGGTTACTAGATGGGTCGATTAGAAACAGCAATACGAAGCTACTCGATGAGAGTTATGGAGATGACGAAGATGAGCATGGTGATACTCTCTGTGGGAGCTGCGGAGGGAACTACAATGCAGATGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTTCCATGGAAAATGTGTGCGGATAACACCTGCTAAGGCAGAAAATATCAAGCAGTACAAATGCCCCAATTGCAGCATGAAGAGAGGAAGACCGTAG

mRNA sequence

ATGATTAATGATCTACCAACTCTATTTGAAGTTGCGTCTGGAAGGAAAGCTGTTAAAGACAAACCCAGTATGGATAGTGGAAGTAAATCCAGAAACAGCACTAAGAGGTTACTAGATGGGTCGATTAGAAACAGCAATACGAAGCTACTCGATGAGAGTTATGGAGATGACGAAGATGAGCATGGTGATACTCTCTGTGGGAGCTGCGGAGGGAACTACAATGCAGATGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTTCCATGGAAAATGTGTGCGGATAACACCTGCTAAGGCAGAAAATATCAAGCAGTACAAATGCCCCAATTGCAGCATGAAGAGAGGAAGACCGTAG

Coding sequence (CDS)

ATGATTAATGATCTACCAACTCTATTTGAAGTTGCGTCTGGAAGGAAAGCTGTTAAAGACAAACCCAGTATGGATAGTGGAAGTAAATCCAGAAACAGCACTAAGAGGTTACTAGATGGGTCGATTAGAAACAGCAATACGAAGCTACTCGATGAGAGTTATGGAGATGACGAAGATGAGCATGGTGATACTCTCTGTGGGAGCTGCGGAGGGAACTACAATGCAGATGAGTTTTGGATTGGATGTGACATCTGTGAGAGGTGGTTCCATGGAAAATGTGTGCGGATAACACCTGCTAAGGCAGAAAATATCAAGCAGTACAAATGCCCCAATTGCAGCATGAAGAGAGGAAGACCGTAG

Protein sequence

MINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRLLDGSIRNSNTKLLDESYGDDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPNCSMKRGRP

Homology

[Close]

BLAST of Lag0040917 vs. NCBI nr
Match: XP_022156923.1 (PHD finger protein ALFIN-LIKE 2-like [Momordica charantia])

HSP 1 Score: 238.8 bits (608), Expect = 2.4e-59
Identity = 111/119 (93.28%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRLLDGSIRNSNTKLLDESYGDDEDE 60
           +INDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKR +DGSIR+SN KLLDESYG+DEDE
Sbjct: 123 LINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRSIDGSIRSSNLKLLDESYGEDEDE 182

Query: 61  HGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPNCSMKRGRP 120
           HGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCP+CS KRGRP
Sbjct: 183 HGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCSTKRGRP 241

[Close]

BLAST of Lag0040917 vs. NCBI nr
Match: XP_022957000.1 (PHD finger protein ALFIN-LIKE 2-like [Cucurbita moschata] >XP_022987222.1 PHD finger protein ALFIN-LIKE 2-like [Cucurbita maxima] >KAG6600924.1 PHD finger protein ALFIN-LIKE 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 237.3 bits (604), Expect = 7.0e-59
Identity = 111/118 (94.07%), Postives = 115/118 (97.46%), Query Frame = 0


Query: 1   MINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRLLDGSIRNSNTKLLDESYGDDEDE 60
           MINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKR LDGSIRNSN KLLDESYG++EDE
Sbjct: 123 MINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRSLDGSIRNSNPKLLDESYGEEEDE 182

Query: 61  HGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPNCSMKRGR 119
           HGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKA+NIKQYKCP+CS KRGR
Sbjct: 183 HGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKADNIKQYKCPSCSTKRGR 240

[Close]

BLAST of Lag0040917 vs. NCBI nr
Match: XP_038893084.1 (PHD finger protein ALFIN-LIKE 2-like [Benincasa hispida])

HSP 1 Score: 237.3 bits (604), Expect = 7.0e-59
Identity = 111/118 (94.07%), Postives = 115/118 (97.46%), Query Frame = 0


Query: 1   MINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRLLDGSIRNSNTKLLDESYGDDEDE 60
           MINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKR +DGSIRNSN KLL+ESYG+DEDE
Sbjct: 123 MINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRSVDGSIRNSNPKLLEESYGEDEDE 182

Query: 61  HGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPNCSMKRGR 119
           HGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCP+CS KRGR
Sbjct: 183 HGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPSCSTKRGR 240

[Close]

BLAST of Lag0040917 vs. NCBI nr
Match: XP_011654991.1 (PHD finger protein ALFIN-LIKE 2 [Cucumis sativus] >KAE8648026.1 hypothetical protein Csa_005878 [Cucumis sativus])

HSP 1 Score: 235.7 bits (600), Expect = 2.0e-58
Identity = 110/118 (93.22%), Postives = 114/118 (96.61%), Query Frame = 0


Query: 1   MINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRLLDGSIRNSNTKLLDESYGDDEDE 60
           MINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKR LDGS RNSN KLL+ESYG+DEDE
Sbjct: 123 MINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRTLDGSTRNSNPKLLEESYGEDEDE 182

Query: 61  HGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPNCSMKRGR 119
           HGDTLCGSCGGNYNADEFWIGCDICE+WFHGKCVRITPAKAENIKQYKCP+CS KRGR
Sbjct: 183 HGDTLCGSCGGNYNADEFWIGCDICEKWFHGKCVRITPAKAENIKQYKCPSCSTKRGR 240

[Close]

BLAST of Lag0040917 vs. NCBI nr
Match: XP_008463243.1 (PREDICTED: PHD finger protein ALFIN-LIKE 2-like [Cucumis melo] >KAA0057678.1 PHD finger protein ALFIN-LIKE 2-like [Cucumis melo var. makuwa] >TYK27463.1 PHD finger protein ALFIN-LIKE 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 235.3 bits (599), Expect = 2.6e-58
Identity = 110/118 (93.22%), Postives = 114/118 (96.61%), Query Frame = 0


Query: 1   MINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRLLDGSIRNSNTKLLDESYGDDEDE 60
           MINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKR LDGS RNSN KLL+ESYG+DEDE
Sbjct: 123 MINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRSLDGSTRNSNPKLLEESYGEDEDE 182

Query: 61  HGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPNCSMKRGR 119
           HGDTLCGSCGGNYNADEFWIGCDICERW+HGKCVRITPAKAENIKQYKCP+CS KRGR
Sbjct: 183 HGDTLCGSCGGNYNADEFWIGCDICERWYHGKCVRITPAKAENIKQYKCPSCSTKRGR 240

[Close]

BLAST of Lag0040917 vs. ExPASy Swiss-Prot
Match: Q9FFF5 (PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=AL1 PE=1 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 4.1e-46
Identity = 85/119 (71.43%), Postives = 101/119 (84.87%), Query Frame = 0


Query: 1   MINDLPTLFEVASGRKAVKD-KPSMDSGSKSRNSTKRLLDGSIRNSNTKLLDESYGDDED 60
           +INDLPTLFEV +GRK +KD KPSMD GSKSRN  KR ++G  + S  KL++ESY D++D
Sbjct: 123 LINDLPTLFEVVTGRKPIKDGKPSMDLGSKSRNGVKRSIEGQTK-STPKLMEESYEDEDD 182

Query: 61  EHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPNCSMKRGR 119
           EHGDTLCGSCGGNY  DEFWI CD+CERW+HGKCV+ITPAKAE+IKQYKCP+C  K+GR
Sbjct: 183 EHGDTLCGSCGGNYTNDEFWICCDVCERWYHGKCVKITPAKAESIKQYKCPSCCTKKGR 240

[Close]

BLAST of Lag0040917 vs. ExPASy Swiss-Prot
Match: Q9SRM4 (PHD finger protein ALFIN-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=AL2 PE=1 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.6e-45
Identity = 85/121 (70.25%), Postives = 103/121 (85.12%), Query Frame = 0


Query: 1   MINDLPTLFEVASGRKAVKD-KPSMDSGSKSRNSTKRLLDGSIRNSNTKLLDESY--GDD 60
           +INDLPTLF+V +GRKA+KD KPS DSGSKSRN TKR +DG  ++S  KL++ESY   ++
Sbjct: 125 LINDLPTLFDVVTGRKAMKDNKPSSDSGSKSRNGTKRSIDGQTKSSTPKLMEESYEEEEE 184

Query: 61  EDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPNCSMKRG 119
           EDEHGDTLCGSCGG+Y  +EFWI CD+CERW+HGKCV+ITPAKAE+IKQYKCP C  K+G
Sbjct: 185 EDEHGDTLCGSCGGHYTNEEFWICCDVCERWYHGKCVKITPAKAESIKQYKCPPCCAKKG 244

[Close]

BLAST of Lag0040917 vs. ExPASy Swiss-Prot
Match: B8AMA8 (PHD finger protein ALFIN-LIKE 3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_14081 PE=3 SV=2)

HSP 1 Score: 159.8 bits (403), Expect = 1.8e-38
Identity = 71/113 (62.83%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 1   MINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRLLDGSIRNSNTKLLDESYGDDEDE 60
           MINDLPT++E    RK V+D+  +DS  KS++STKR  +G ++ S  +++ E Y DD++E
Sbjct: 128 MINDLPTVYEALVDRKHVRDRSGVDSSGKSKHSTKRTGEGQVKRS--RVVAEEYEDDDEE 187

Query: 61  HGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPNCS 114
           H +T CG+CGG YNA+EFWIGCDICERWFHGKCVRITPAKAE+IK YKCP+CS
Sbjct: 188 HNETFCGTCGGLYNANEFWIGCDICERWFHGKCVRITPAKAEHIKHYKCPDCS 238

[Close]

BLAST of Lag0040917 vs. ExPASy Swiss-Prot
Match: Q84TV4 (PHD finger protein ALFIN-LIKE 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0818300 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.8e-38
Identity = 71/113 (62.83%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 1   MINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSTKRLLDGSIRNSNTKLLDESYGDDEDE 60
           MINDLPT++E    RK V+D+  +DS  KS++STKR  +G ++ S  +++ E Y DD++E
Sbjct: 128 MINDLPTVYEALVDRKHVRDRSGVDSSGKSKHSTKRTGEGQVKRS--RVVAEEYEDDDEE 187

Query: 61  HGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPNCS 114
           H +T CG+CGG YNA+EFWIGCDICERWFHGKCVRITPAKAE+IK YKCP+CS
Sbjct: 188 HNETFCGTCGGLYNANEFWIGCDICERWFHGKCVRITPAKAEHIKHYKCPDCS 238

[Close]

BLAST of Lag0040917 vs. ExPASy Swiss-Prot
Match: A2Y0Q2 (PHD finger protein ALFIN-LIKE 1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_18576 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.0e-36
Identity = 70/120 (58.33%), Postives = 93/120 (77.50%), Query Frame = 0


Query: 1   MINDLPTLFEVASGRKAVK--DKPSMDSGSKSRNSTKRLLDGSIRNSNTKLLDESYGDDE 60
           M+NDLPT++EV SG +  K  D+  MD+ S+++ S+K   D +   +N K  DE Y +D+
Sbjct: 138 MMNDLPTVYEVVSGSRQSKERDRSGMDNSSRNKISSKHTSDVARVENNIKEEDEGYDEDD 197

Query: 61  DEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKAENIKQYKCPNCSMKRGR 119
            +H +TLCG+CGG Y+ADEFWIGCD+CERW+HGKCV+ITPAKAE+IKQYKCP+CS KR R
Sbjct: 198 GDHSETLCGTCGGIYSADEFWIGCDVCERWYHGKCVKITPAKAESIKQYKCPSCSSKRPR 257

The following BLAST results are available for this feature:

BLAST of Lag0040917 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156923.1	2.4e-59	93.28	PHD finger protein ALFIN-LIKE 2-like [Momordica charantia]	[more]
XP_022957000.1	7.0e-59	94.07	PHD finger protein ALFIN-LIKE 2-like [Cucurbita moschata] >XP_022987222.1 PHD fi...	[more]
XP_038893084.1	7.0e-59	94.07	PHD finger protein ALFIN-LIKE 2-like [Benincasa hispida]	[more]
XP_011654991.1	2.0e-58	93.22	PHD finger protein ALFIN-LIKE 2 [Cucumis sativus] >KAE8648026.1 hypothetical pro...	[more]
XP_008463243.1	2.6e-58	93.22	PREDICTED: PHD finger protein ALFIN-LIKE 2-like [Cucumis melo] >KAA0057678.1 PHD...	[more]

BLAST of Lag0040917 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FFF5	4.1e-46	71.43	PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=AL1 PE=1 SV=1	[more]
Q9SRM4	1.6e-45	70.25	PHD finger protein ALFIN-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=AL2 PE=1 SV=1	[more]
B8AMA8	1.8e-38	62.83	PHD finger protein ALFIN-LIKE 3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_14...	[more]
Q84TV4	1.8e-38	62.83	PHD finger protein ALFIN-LIKE 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03...	[more]
A2Y0Q2	1.0e-36	58.33	PHD finger protein ALFIN-LIKE 1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_18...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001965	Zinc finger, PHD-type	SMART	SM00249	PHD_3	coord: 65..113 e-value: 2.2E-10 score: 50.5
IPR019787	Zinc finger, PHD-finger	PFAM	PF00628	PHD	coord: 66..114 e-value: 2.0E-11 score: 43.6
IPR019787	Zinc finger, PHD-finger	PROSITE	PS50016	ZF_PHD_2	coord: 63..115 score: 9.4366
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 55..113 e-value: 8.1E-27 score: 94.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..38
None	No IPR available	PANTHER	PTHR12321:SF122	PHD FINGER PROTEIN ALFIN-LIKE 2	coord: 1..118
IPR045104	Alfin	PANTHER	PTHR12321	CPG BINDING PROTEIN	coord: 1..118
IPR019786	Zinc finger, PHD-type, conserved site	PROSITE	PS01359	ZF_PHD_1	coord: 66..112
IPR044104	Alfin1-like, PHD finger	CDD	cd15613	PHD_AL_plant	coord: 65..115 e-value: 9.33737E-29 score: 97.1809
IPR011011	Zinc finger, FYVE/PHD-type	SUPERFAMILY	57903	FYVE/PHD zinc finger	coord: 54..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040917.1	Lag0040917.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006325	chromatin organization
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0042393	histone binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0000976	transcription cis-regulatory region binding
molecular_function	GO:0003712	transcription coregulator activity