Lag0040916 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040916
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr13: 9736359 .. 9736979 (-)
RNA-Seq Expression	Lag0040916
Synteny	Lag0040916

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTTCTCTCCTGGAATGTTCAAGGCTTGGGGTCATGGAAAAATCGGACAGTAATCAAAGCAGCTATTTCGAAGCAAAATCCTTCGTTTGTTCTCCTTCAGGAAACTAAGAAGACTACAACTACCAGACGGTTAATTAAATCTATATGGAGTTCATCCTTCATTGGTTGGGCAGCCCTCGACTCCATAGGAGCTTCGGGCGGGATCATTATCATGTGGAGCGACCCGGATTACACCATTAAGGAGACTATTCGAGGTCTTTTCTCACTCTCTATTCATGTTTGTATGGCTGATGGTTTTTCTTTTTGGTTATCGGCTATCTATGGCCCAACAGATCAAGCTCAAAGGGCGGATTTTTGGCAAGAGCTTCATGACTTGGCTGGTTTGGGAGGGAATTGTTGGATTGTTGGGGGAGACTTTAACGTTACTCGTTGGACCTGGGAGAAATCTAACGACCAGCCTATTACCAACAATATGAGAATGTTCAATAGATGGATAGAGGAGCATCAACTGTTGGATATTCCTCTACAAAATGGGCGGTTTACTTGGTCTAGCATGGGGAAAATCGGTCTCTTACTCTGCTGGACAGATTTTTCACCACTAATGATTGTCTTTTGA

mRNA sequence

ATGAAATTTCTCTCCTGGAATGTTCAAGGCTTGGGGTCATGGAAAAATCGGACAGTAATCAAAGCAGCTATTTCGAAGCAAAATCCTTCGTTTGTTCTCCTTCAGGAAACTAAGAAGACTACAACTACCAGACGGTTAATTAAATCTATATGGAGTTCATCCTTCATTGGTTGGGCAGCCCTCGACTCCATAGGAGCTTCGGGCGGGATCATTATCATGTGGAGCGACCCGGATTACACCATTAAGGAGACTATTCGAGGTCTTTTCTCACTCTCTATTCATGTTTGTATGGCTGATGGTTTTTCTTTTTGGTTATCGGCTATCTATGGCCCAACAGATCAAGCTCAAAGGGCGGATTTTTGGCAAGAGCTTCATGACTTGGCTGGTTTGGGAGGGAATTGTTGGATTGTTGGGGGAGACTTTAACGTTACTCGTTGGACCTGGGAGAAATCTAACGACCAGCCTATTACCAACAATATGAGAATGTTCAATAGATGGATAGAGGAGCATCAACTGTTGGATATTCCTCTACAAAATGGGCGGTTTACTTGGTCTAGCATGGGGAAAATCGGTCTCTTACTCTGCTGGACAGATTTTTCACCACTAATGATTGTCTTTTGA

Coding sequence (CDS)

ATGAAATTTCTCTCCTGGAATGTTCAAGGCTTGGGGTCATGGAAAAATCGGACAGTAATCAAAGCAGCTATTTCGAAGCAAAATCCTTCGTTTGTTCTCCTTCAGGAAACTAAGAAGACTACAACTACCAGACGGTTAATTAAATCTATATGGAGTTCATCCTTCATTGGTTGGGCAGCCCTCGACTCCATAGGAGCTTCGGGCGGGATCATTATCATGTGGAGCGACCCGGATTACACCATTAAGGAGACTATTCGAGGTCTTTTCTCACTCTCTATTCATGTTTGTATGGCTGATGGTTTTTCTTTTTGGTTATCGGCTATCTATGGCCCAACAGATCAAGCTCAAAGGGCGGATTTTTGGCAAGAGCTTCATGACTTGGCTGGTTTGGGAGGGAATTGTTGGATTGTTGGGGGAGACTTTAACGTTACTCGTTGGACCTGGGAGAAATCTAACGACCAGCCTATTACCAACAATATGAGAATGTTCAATAGATGGATAGAGGAGCATCAACTGTTGGATATTCCTCTACAAAATGGGCGGTTTACTTGGTCTAGCATGGGGAAAATCGGTCTCTTACTCTGCTGGACAGATTTTTCACCACTAATGATTGTCTTTTGA

Protein sequence

MKFLSWNVQGLGSWKNRTVIKAAISKQNPSFVLLQETKKTTTTRRLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIHVCMADGFSFWLSAIYGPTDQAQRADFWQELHDLAGLGGNCWIVGGDFNVTRWTWEKSNDQPITNNMRMFNRWIEEHQLLDIPLQNGRFTWSSMGKIGLLLCWTDFSPLMIVF

Homology

[Close]

BLAST of Lag0040916 vs. NCBI nr
Match: XP_022158956.1 (uncharacterized protein LOC111025405 [Momordica charantia])

HSP 1 Score: 224.6 bits (571), Expect = 8.1e-55
Identity = 101/196 (51.53%), Postives = 139/196 (70.92%), Query Frame = 0


Query: 1   MKFLSWNVQGLGSWKNRTVIKAAISKQNPSFVLLQETKKTTTTRRLIKSIWSSSFIGWAA 60
           MKFL+WNV+GL SWK   +IK  IS+ NP+ V+LQETK +     ++KS+WS+  I W+A
Sbjct: 1   MKFLTWNVRGLDSWKKGALIKQFISRLNPNVVILQETKLSYMDILIVKSLWSAHGINWSA 60

Query: 61  LDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIHVCMADGFSFWLSAIYGPTDQAQRADF 120
           LD+ G + GI+I+W+DPD    E I G+FSL+I+ C++DGF FW+S IYGP+       F
Sbjct: 61  LDASGMASGILILWNDPDLKAAEMIEGVFSLTINFCLSDGFLFWVSGIYGPSTTEFHYLF 120

Query: 121 WQELHDLAGLGGNCWIVGGDFNVTRWTWEKSNDQPITNNMRMFNRWIEEHQLLDIPLQNG 180
           WQEL DL+ L  N WI+ GDFNVTRW+WEKSN +P+T +M +FN +IE+  L+D+PL NG
Sbjct: 121 WQELLDLSDLCENHWILAGDFNVTRWSWEKSNGRPLTKSMWLFNSFIEDSSLIDVPLTNG 180

Query: 181 RFTWSSMGKIGLLLCW 197
           + TWS      L+ C+
Sbjct: 181 QHTWSRNTSFSLIDCF 196

[Close]

BLAST of Lag0040916 vs. NCBI nr
Match: RVW78875.1 (LINE-1 retrotransposable element ORF2 protein [Vitis vinifera])

HSP 1 Score: 191.0 bits (484), Expect = 9.9e-45
Identity = 91/187 (48.66%), Postives = 117/187 (62.57%), Query Frame = 0


Query: 1   MKFLSWNVQGLGSWKNRTVIKAAISKQNPSFVLLQETKKTTTTRRLIKSIWSSSFIGWAA 60
           MK LSWN +GLGS K R  ++  +S QNP  V+LQETK+    RRL+ SIW    + W A
Sbjct: 356 MKILSWNTRGLGSRKKRRTVRRFLSTQNPDVVMLQETKREIWDRRLVSSIWKGKSLDWVA 415

Query: 61  LDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIHVCMADGFSFWLSAIYGPTDQAQRADF 120
           L + GASGGI+I+W    +   E + G FS+++ +   +  SFWLS++YGP     R DF
Sbjct: 416 LPACGASGGIVILWDSVKFNCSEKVLGSFSVTVKLNSDEEGSFWLSSVYGPNKAVWREDF 475

Query: 121 WQELHDLAGLGGNCWIVGGDFNVTRWTWEKSNDQPITNNMRMFNRWIEEHQLLDIPLQNG 180
           W EL DL GL    W VGGDFNV R  +EK  D  +T NMR F+ +I E  LLD PL+N 
Sbjct: 476 WLELQDLHGLTFPRWCVGGDFNVIRRIFEKMGDSSLTVNMRRFDEFIRESGLLDPPLRNA 535

Query: 181 RFTWSSM 188
            FTWS+M
Sbjct: 536 AFTWSNM 542

[Close]

BLAST of Lag0040916 vs. NCBI nr
Match: RVX15530.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 186.4 bits (472), Expect = 2.4e-43
Identity = 88/186 (47.31%), Postives = 117/186 (62.90%), Query Frame = 0


Query: 2   KFLSWNVQGLGSWKNRTVIKAAISKQNPSFVLLQETKKTTTTRRLIKSIWSSSFIGWAAL 61
           K LSWN +GLGS K R +++  +S QNP  V+LQETK+ T  RR + S+W    + WAAL
Sbjct: 393 KILSWNTRGLGSKKKRRIVRRFLSTQNPDIVMLQETKRETWDRRFVSSVWKGKRVEWAAL 452

Query: 62  DSIGASGGIIIMWSDPDYTIKETIRGLFSLSIHVCMADGFSFWLSAIYGPTDQAQRADFW 121
            + GASGGI+I+W    +   E + G FS+++     +  SFWL+++YGP +   R DFW
Sbjct: 453 PACGASGGIVILWDSSKFECTEKVLGSFSVTVKFNSGEEGSFWLTSVYGPINPLWRKDFW 512

Query: 122 QELHDLAGLGGNCWIVGGDFNVTRWTWEKSNDQPITNNMRMFNRWIEEHQLLDIPLQNGR 181
            EL DL GL    W VGGDFNV R   EK  +  +T NMR F+ +I E  LLD PL+N  
Sbjct: 513 LELQDLYGLTFPRWCVGGDFNVIRRISEKLGETRLTFNMRCFDEFIRESGLLDPPLRNAA 572

Query: 182 FTWSSM 188
           FTWS+M
Sbjct: 573 FTWSNM 578

[Close]

BLAST of Lag0040916 vs. NCBI nr
Match: RVW64408.1 (LINE-1 retrotransposable element ORF2 protein [Vitis vinifera])

HSP 1 Score: 186.0 bits (471), Expect = 3.2e-43
Identity = 88/187 (47.06%), Postives = 117/187 (62.57%), Query Frame = 0


Query: 1   MKFLSWNVQGLGSWKNRTVIKAAISKQNPSFVLLQETKKTTTTRRLIKSIWSSSFIGWAA 60
           MK LSWN +GLGS K R +++  +S QNP  V+LQETK+ T  RR + S+W    + WAA
Sbjct: 736 MKILSWNTRGLGSKKKRRIVRRFLSTQNPDIVMLQETKRETWDRRFVSSVWKGKRVEWAA 795

Query: 61  LDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIHVCMADGFSFWLSAIYGPTDQAQRADF 120
           L + GASGGI+I+W        E + G FS+++     +  SFWL+++YGP +   R DF
Sbjct: 796 LPACGASGGIVILWDSSKLECTEKVLGSFSVTVKFNSGEEGSFWLTSVYGPINPLWRKDF 855

Query: 121 WQELHDLAGLGGNCWIVGGDFNVTRWTWEKSNDQPITNNMRMFNRWIEEHQLLDIPLQNG 180
           W EL DL GL    W VGGDFNV R   EK  +  +T NMR F+ +I E  L+D PL+N 
Sbjct: 856 WLELQDLYGLTFPRWCVGGDFNVIRRISEKLGETRLTLNMRCFDEFIRESGLIDPPLRNA 915

Query: 181 RFTWSSM 188
            FTWS+M
Sbjct: 916 AFTWSNM 922

[Close]

BLAST of Lag0040916 vs. NCBI nr
Match: RVX07754.1 (LINE-1 retrotransposable element ORF2 protein [Vitis vinifera])

HSP 1 Score: 186.0 bits (471), Expect = 3.2e-43
Identity = 89/186 (47.85%), Postives = 115/186 (61.83%), Query Frame = 0


Query: 2   KFLSWNVQGLGSWKNRTVIKAAISKQNPSFVLLQETKKTTTTRRLIKSIWSSSFIGWAAL 61
           K LSWN +GLGS K R  ++  +S QNP  V+LQETK+    RRL+ SIW    + W AL
Sbjct: 123 KILSWNTRGLGSRKKRRTVRRFLSTQNPDVVMLQETKREIWDRRLVSSIWKGKSLDWVAL 182

Query: 62  DSIGASGGIIIMWSDPDYTIKETIRGLFSLSIHVCMADGFSFWLSAIYGPTDQAQRADFW 121
            + GASGGI+I+W    +   E + G FS+++ +   +  SFWL+++YGP     R DFW
Sbjct: 183 PACGASGGIVILWDSVKFNCSEKVLGSFSVTVKLNSDEEESFWLTSVYGPNKAVWREDFW 242

Query: 122 QELHDLAGLGGNCWIVGGDFNVTRWTWEKSNDQPITNNMRMFNRWIEEHQLLDIPLQNGR 181
            EL DL GL    W VGGDFNV R   EK  D  +T NMR F+ +I E  LLD PL+N  
Sbjct: 243 LELQDLHGLTFPRWCVGGDFNVIRRISEKMGDSRLTVNMRRFDEFIRESGLLDPPLRNAA 302

Query: 182 FTWSSM 188
           FTWS+M
Sbjct: 303 FTWSNM 308

[Close]

BLAST of Lag0040916 vs. ExPASy TrEMBL
Match: A0A6J1E2G6 (uncharacterized protein LOC111025405 OS=Momordica charantia OX=3673 GN=LOC111025405 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 3.9e-55
Identity = 101/196 (51.53%), Postives = 139/196 (70.92%), Query Frame = 0


Query: 1   MKFLSWNVQGLGSWKNRTVIKAAISKQNPSFVLLQETKKTTTTRRLIKSIWSSSFIGWAA 60
           MKFL+WNV+GL SWK   +IK  IS+ NP+ V+LQETK +     ++KS+WS+  I W+A
Sbjct: 1   MKFLTWNVRGLDSWKKGALIKQFISRLNPNVVILQETKLSYMDILIVKSLWSAHGINWSA 60

Query: 61  LDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIHVCMADGFSFWLSAIYGPTDQAQRADF 120
           LD+ G + GI+I+W+DPD    E I G+FSL+I+ C++DGF FW+S IYGP+       F
Sbjct: 61  LDASGMASGILILWNDPDLKAAEMIEGVFSLTINFCLSDGFLFWVSGIYGPSTTEFHYLF 120

Query: 121 WQELHDLAGLGGNCWIVGGDFNVTRWTWEKSNDQPITNNMRMFNRWIEEHQLLDIPLQNG 180
           WQEL DL+ L  N WI+ GDFNVTRW+WEKSN +P+T +M +FN +IE+  L+D+PL NG
Sbjct: 121 WQELLDLSDLCENHWILAGDFNVTRWSWEKSNGRPLTKSMWLFNSFIEDSSLIDVPLTNG 180

Query: 181 RFTWSSMGKIGLLLCW 197
           + TWS      L+ C+
Sbjct: 181 QHTWSRNTSFSLIDCF 196

[Close]

BLAST of Lag0040916 vs. ExPASy TrEMBL
Match: A0A438H302 (LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF2_86 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 4.8e-45
Identity = 91/187 (48.66%), Postives = 117/187 (62.57%), Query Frame = 0


Query: 1   MKFLSWNVQGLGSWKNRTVIKAAISKQNPSFVLLQETKKTTTTRRLIKSIWSSSFIGWAA 60
           MK LSWN +GLGS K R  ++  +S QNP  V+LQETK+    RRL+ SIW    + W A
Sbjct: 356 MKILSWNTRGLGSRKKRRTVRRFLSTQNPDVVMLQETKREIWDRRLVSSIWKGKSLDWVA 415

Query: 61  LDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIHVCMADGFSFWLSAIYGPTDQAQRADF 120
           L + GASGGI+I+W    +   E + G FS+++ +   +  SFWLS++YGP     R DF
Sbjct: 416 LPACGASGGIVILWDSVKFNCSEKVLGSFSVTVKLNSDEEGSFWLSSVYGPNKAVWREDF 475

Query: 121 WQELHDLAGLGGNCWIVGGDFNVTRWTWEKSNDQPITNNMRMFNRWIEEHQLLDIPLQNG 180
           W EL DL GL    W VGGDFNV R  +EK  D  +T NMR F+ +I E  LLD PL+N 
Sbjct: 476 WLELQDLHGLTFPRWCVGGDFNVIRRIFEKMGDSSLTVNMRRFDEFIRESGLLDPPLRNA 535

Query: 181 RFTWSSM 188
            FTWS+M
Sbjct: 536 AFTWSNM 542

[Close]

BLAST of Lag0040916 vs. ExPASy TrEMBL
Match: A0A438K2W1 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_863 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.2e-43
Identity = 88/186 (47.31%), Postives = 117/186 (62.90%), Query Frame = 0


Query: 2   KFLSWNVQGLGSWKNRTVIKAAISKQNPSFVLLQETKKTTTTRRLIKSIWSSSFIGWAAL 61
           K LSWN +GLGS K R +++  +S QNP  V+LQETK+ T  RR + S+W    + WAAL
Sbjct: 393 KILSWNTRGLGSKKKRRIVRRFLSTQNPDIVMLQETKRETWDRRFVSSVWKGKRVEWAAL 452

Query: 62  DSIGASGGIIIMWSDPDYTIKETIRGLFSLSIHVCMADGFSFWLSAIYGPTDQAQRADFW 121
            + GASGGI+I+W    +   E + G FS+++     +  SFWL+++YGP +   R DFW
Sbjct: 453 PACGASGGIVILWDSSKFECTEKVLGSFSVTVKFNSGEEGSFWLTSVYGPINPLWRKDFW 512

Query: 122 QELHDLAGLGGNCWIVGGDFNVTRWTWEKSNDQPITNNMRMFNRWIEEHQLLDIPLQNGR 181
            EL DL GL    W VGGDFNV R   EK  +  +T NMR F+ +I E  LLD PL+N  
Sbjct: 513 LELQDLYGLTFPRWCVGGDFNVIRRISEKLGETRLTFNMRCFDEFIRESGLLDPPLRNAA 572

Query: 182 FTWSSM 188
           FTWS+M
Sbjct: 573 FTWSNM 578

[Close]

BLAST of Lag0040916 vs. ExPASy TrEMBL
Match: A0A438FWU5 (LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF2_70 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.5e-43
Identity = 88/187 (47.06%), Postives = 117/187 (62.57%), Query Frame = 0


Query: 1   MKFLSWNVQGLGSWKNRTVIKAAISKQNPSFVLLQETKKTTTTRRLIKSIWSSSFIGWAA 60
           MK LSWN +GLGS K R +++  +S QNP  V+LQETK+ T  RR + S+W    + WAA
Sbjct: 736 MKILSWNTRGLGSKKKRRIVRRFLSTQNPDIVMLQETKRETWDRRFVSSVWKGKRVEWAA 795

Query: 61  LDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIHVCMADGFSFWLSAIYGPTDQAQRADF 120
           L + GASGGI+I+W        E + G FS+++     +  SFWL+++YGP +   R DF
Sbjct: 796 LPACGASGGIVILWDSSKLECTEKVLGSFSVTVKFNSGEEGSFWLTSVYGPINPLWRKDF 855

Query: 121 WQELHDLAGLGGNCWIVGGDFNVTRWTWEKSNDQPITNNMRMFNRWIEEHQLLDIPLQNG 180
           W EL DL GL    W VGGDFNV R   EK  +  +T NMR F+ +I E  L+D PL+N 
Sbjct: 856 WLELQDLYGLTFPRWCVGGDFNVIRRISEKLGETRLTLNMRCFDEFIRESGLIDPPLRNA 915

Query: 181 RFTWSSM 188
            FTWS+M
Sbjct: 916 AFTWSNM 922

[Close]

BLAST of Lag0040916 vs. ExPASy TrEMBL
Match: A0A438JFM2 (LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF2_80 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.5e-43
Identity = 89/186 (47.85%), Postives = 115/186 (61.83%), Query Frame = 0


Query: 2   KFLSWNVQGLGSWKNRTVIKAAISKQNPSFVLLQETKKTTTTRRLIKSIWSSSFIGWAAL 61
           K LSWN +GLGS K R  ++  +S QNP  V+LQETK+    RRL+ SIW    + W AL
Sbjct: 123 KILSWNTRGLGSRKKRRTVRRFLSTQNPDVVMLQETKREIWDRRLVSSIWKGKSLDWVAL 182

Query: 62  DSIGASGGIIIMWSDPDYTIKETIRGLFSLSIHVCMADGFSFWLSAIYGPTDQAQRADFW 121
            + GASGGI+I+W    +   E + G FS+++ +   +  SFWL+++YGP     R DFW
Sbjct: 183 PACGASGGIVILWDSVKFNCSEKVLGSFSVTVKLNSDEEESFWLTSVYGPNKAVWREDFW 242

Query: 122 QELHDLAGLGGNCWIVGGDFNVTRWTWEKSNDQPITNNMRMFNRWIEEHQLLDIPLQNGR 181
            EL DL GL    W VGGDFNV R   EK  D  +T NMR F+ +I E  LLD PL+N  
Sbjct: 243 LELQDLHGLTFPRWCVGGDFNVIRRISEKMGDSRLTVNMRRFDEFIRESGLLDPPLRNAA 302

Query: 182 FTWSSM 188
           FTWS+M
Sbjct: 303 FTWSNM 308

The following BLAST results are available for this feature:

BLAST of Lag0040916 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158956.1	8.1e-55	51.53	uncharacterized protein LOC111025405 [Momordica charantia]	[more]
RVW78875.1	9.9e-45	48.66	LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]	[more]
RVX15530.1	2.4e-43	47.31	putative ribonuclease H protein [Vitis vinifera]	[more]
RVW64408.1	3.2e-43	47.06	LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]	[more]
RVX07754.1	3.2e-43	47.85	LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]	[more]

BLAST of Lag0040916 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0040916 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E2G6	3.9e-55	51.53	uncharacterized protein LOC111025405 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A438H302	4.8e-45	48.66	LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF...	[more]
A0A438K2W1	1.2e-43	47.31	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_863 P...	[more]
A0A438FWU5	1.5e-43	47.06	LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF...	[more]
A0A438JFM2	1.5e-43	47.85	LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF...	[more]

BLAST of Lag0040916 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 1..197 e-value: 6.8E-31 score: 109.8
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 1..188
IPR004808	AP endonuclease 1	PANTHER	PTHR22748	AP ENDONUCLEASE	coord: 1..157
None	No IPR available	PANTHER	PTHR22748:SF11	DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE CHLOROPLASTIC	coord: 1..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040916.1	Lag0040916.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0004518	nuclease activity