Lag0040906 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040906
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	protein EARLY FLOWERING 4-like
Location	chr13: 9617902 .. 9618483 (+)
RNA-Seq Expression	Lag0040906
Synteny	Lag0040906

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTTTCCACGCGCTCTTGTCTCGCGTGGGCCCTCTGTAAGTCTCTCACAGCTCCACGTCCCGAGCTGCACCGATAATGGATCCACTCAGTATTTAGTCTTCACCACCGCCATTTTTCCTCTGCACATTTCCACCTTCAACCTTCCCCCTTTACAAACTCAAACTTCCAAACTCTTCAACTCCCCTTCAACCATGGCCGACAACCCCCGCCGCAAGTCCAAAACAAAGCCCTCGGCAACCACCACCACCACCACAACCACCACCAGCGACGACGGCCAGCACGACGGCTTCCCTGACGAATGCGACGCCGAGGTCTGGGCCTCCTTCGACCAGACCTTCCGGCAGGTCCAGTCGGTGCTGGACCGAAACAGAGCACTGATTCAACAGGTGAACGAGAATCATCAGTCTCGAATTTCCAGCAACATGGTGGACAACGTGGCTCTGATCCAAGAACTCAATGGAAACATCTCAAAAGTTGTCTCCATGTACTCCGATTTCTCCTCTGATTTCTCCACTGTGTTCAATAACAACAACAAACCCAGAAATGGCAAAAGGGGCAGCAGCAACCAAGATGCTTAA

mRNA sequence

ATGTTCTTTCCACGCGCTCTTGTCTCGCGTGGGCCCTCTGTAAGTCTCTCACAGCTCCACGTCCCGAGCTGCACCGATAATGGATCCACTCAGTATTTAGTCTTCACCACCGCCATTTTTCCTCTGCACATTTCCACCTTCAACCTTCCCCCTTTACAAACTCAAACTTCCAAACTCTTCAACTCCCCTTCAACCATGGCCGACAACCCCCGCCGCAAGTCCAAAACAAAGCCCTCGGCAACCACCACCACCACCACAACCACCACCAGCGACGACGGCCAGCACGACGGCTTCCCTGACGAATGCGACGCCGAGGTCTGGGCCTCCTTCGACCAGACCTTCCGGCAGGTCCAGTCGGTGCTGGACCGAAACAGAGCACTGATTCAACAGGTGAACGAGAATCATCAGTCTCGAATTTCCAGCAACATGGTGGACAACGTGGCTCTGATCCAAGAACTCAATGGAAACATCTCAAAAGTTGTCTCCATGTACTCCGATTTCTCCTCTGATTTCTCCACTGTGTTCAATAACAACAACAAACCCAGAAATGGCAAAAGGGGCAGCAGCAACCAAGATGCTTAA

Coding sequence (CDS)

ATGTTCTTTCCACGCGCTCTTGTCTCGCGTGGGCCCTCTGTAAGTCTCTCACAGCTCCACGTCCCGAGCTGCACCGATAATGGATCCACTCAGTATTTAGTCTTCACCACCGCCATTTTTCCTCTGCACATTTCCACCTTCAACCTTCCCCCTTTACAAACTCAAACTTCCAAACTCTTCAACTCCCCTTCAACCATGGCCGACAACCCCCGCCGCAAGTCCAAAACAAAGCCCTCGGCAACCACCACCACCACCACAACCACCACCAGCGACGACGGCCAGCACGACGGCTTCCCTGACGAATGCGACGCCGAGGTCTGGGCCTCCTTCGACCAGACCTTCCGGCAGGTCCAGTCGGTGCTGGACCGAAACAGAGCACTGATTCAACAGGTGAACGAGAATCATCAGTCTCGAATTTCCAGCAACATGGTGGACAACGTGGCTCTGATCCAAGAACTCAATGGAAACATCTCAAAAGTTGTCTCCATGTACTCCGATTTCTCCTCTGATTTCTCCACTGTGTTCAATAACAACAACAAACCCAGAAATGGCAAAAGGGGCAGCAGCAACCAAGATGCTTAA

Protein sequence

MFFPRALVSRGPSVSLSQLHVPSCTDNGSTQYLVFTTAIFPLHISTFNLPPLQTQTSKLFNSPSTMADNPRRKSKTKPSATTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNKPRNGKRGSSNQDA

Homology

[Close]

BLAST of Lag0040906 vs. NCBI nr
Match: XP_008463236.2 (PREDICTED: uncharacterized protein LOC103501440 [Cucumis melo])

HSP 1 Score: 231.9 bits (590), Expect = 4.7e-57
Identity = 143/198 (72.22%), Postives = 154/198 (77.78%), Query Frame = 0


Query: 3   FPRALVSRGPSVSLSQ-LHVPSCTDNGSTQYLVFTTAIFPLHISTFNLPPLQTQTSKLFN 62
           FPRA+     S +  Q LHVPS TDNGS+QYLV TTA FP  I  F   P   +T   + 
Sbjct: 10  FPRAV-----SFAWGQWLHVPSYTDNGSSQYLVITTAFFPSSIKPF---PFFQKTQSNYP 69

Query: 63  SPS----TMAD-NPRRKSKTKPSA-TTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFR 122
            P+     MAD NPRRKSK KPSA TTTTTTTTTSDD  HD FPDE DAEVWASFDQTFR
Sbjct: 70  IPNYPFPFMADNNPRRKSKMKPSATTTTTTTTTTSDDPPHDAFPDEYDAEVWASFDQTFR 129

Query: 123 QVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVF 182
           QVQSVLDRNR LIQQVNENHQSRI SNMVDNVALIQELNGNISKVVSMYSDFSSDFST F
Sbjct: 130 QVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAF 189

Query: 183 NNNNKPRNGKRGSSNQDA 194
            +N+KPR+GKRG++N DA
Sbjct: 190 -HNHKPRSGKRGTTNPDA 198

[Close]

BLAST of Lag0040906 vs. NCBI nr
Match: XP_022956860.1 (protein EARLY FLOWERING 4-like [Cucurbita moschata] >XP_023534577.1 protein EARLY FLOWERING 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213.4 bits (542), Expect = 1.7e-51
Identity = 119/130 (91.54%), Postives = 122/130 (93.85%), Query Frame = 0


Query: 66  MAD-NPRRKSKTKPSA-TTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDR 125
           MAD NPRRKSKTKPSA TTTTTTTTTSDDG+HDGFPDECDA+VWASFDQTFRQVQSVLDR
Sbjct: 1   MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDR 60

Query: 126 NRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNKPRN 185
           NR LIQQVNENHQSRI SNMVDNVALIQELNGNISKVVSMYSDFSSDFS+ F NNNK RN
Sbjct: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGF-NNNKSRN 120

Query: 186 GKRGSSNQDA 194
           GKRGSSN DA
Sbjct: 121 GKRGSSNPDA 129

[Close]

BLAST of Lag0040906 vs. NCBI nr
Match: KAG6600929.1 (Protein EARLY FLOWERING 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031565.1 Protein EARLY FLOWERING 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211.5 bits (537), Expect = 6.6e-51
Identity = 118/130 (90.77%), Postives = 122/130 (93.85%), Query Frame = 0


Query: 66  MAD-NPRRKSKTKPSA-TTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDR 125
           MAD NPRRKSKTKPSA TTTTTTTTTSDDG+HDGFPDECDA+VWASFDQTFRQVQSVLDR
Sbjct: 1   MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDR 60

Query: 126 NRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNKPRN 185
           NR LIQQVNENHQSRI SNMVDNVALIQELNGNISKVVSMYSDFSSDFS+ F NN+K RN
Sbjct: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGF-NNHKSRN 120

Query: 186 GKRGSSNQDA 194
           GKRGSSN DA
Sbjct: 121 GKRGSSNPDA 129

[Close]

BLAST of Lag0040906 vs. NCBI nr
Match: XP_022976942.1 (protein EARLY FLOWERING 4-like [Cucurbita maxima])

HSP 1 Score: 204.9 bits (520), Expect = 6.2e-49
Identity = 113/126 (89.68%), Postives = 117/126 (92.86%), Query Frame = 0


Query: 69  NPRRKSKTKPSA-TTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRAL 128
           N RRKSKTKPSA TTTTTTTTTSDDG+HDGFPDECD +VWASFDQTFRQVQSVLDRNR L
Sbjct: 5   NHRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDPQVWASFDQTFRQVQSVLDRNRVL 64

Query: 129 IQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNKPRNGKRG 188
           IQQVNENHQSRI SNMVDNVALIQELNGNISKVVSMYSDFSSDFS+ F NN+K RNGKRG
Sbjct: 65  IQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGF-NNHKSRNGKRG 124

Query: 189 SSNQDA 194
           SSN DA
Sbjct: 125 SSNPDA 129

[Close]

BLAST of Lag0040906 vs. NCBI nr
Match: XP_038892867.1 (protein EARLY FLOWERING 4-like [Benincasa hispida])

HSP 1 Score: 199.5 bits (506), Expect = 2.6e-47
Identity = 115/132 (87.12%), Postives = 120/132 (90.91%), Query Frame = 0


Query: 66  MAD-NPRRKSKTKPSA--TTTTTTTTTSDDGQHDG-FPDECDAEVWASFDQTFRQVQSVL 125
           MAD NPRRKSK KPSA  TTTTTTTTTSDDG HDG FPDE DAEVWASFDQTFRQVQSVL
Sbjct: 1   MADNNPRRKSKMKPSATTTTTTTTTTTSDDGPHDGDFPDEYDAEVWASFDQTFRQVQSVL 60

Query: 126 DRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNKP 185
           DRNR LIQQVNENHQSRI SNMVDNVALIQELNGNISKVVSMYSDFSSDFS+ F +N+KP
Sbjct: 61  DRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSAF-SNHKP 120

Query: 186 RNGKRGSSNQDA 194
           RNGKRGS+N +A
Sbjct: 121 RNGKRGSNNPNA 131

[Close]

BLAST of Lag0040906 vs. ExPASy Swiss-Prot
Match: O04211 (Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana OX=3702 GN=ELF4 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.6e-21
Identity = 52/82 (63.41%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 103 DAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVS 162
           D  +W + D+ FRQVQSVLDRNR+LIQQVN+NHQSR++ NM  NVALIQELNGNISKVV+
Sbjct: 22  DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81

Query: 163 MYSDFSSDFSTVFNNNNKPRNG 185
           MYSD ++ FS+ F+      +G
Sbjct: 82  MYSDLNTSFSSGFHGGKNGHDG 103

[Close]

BLAST of Lag0040906 vs. ExPASy Swiss-Prot
Match: O80877 (Protein ELF4-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=EFL1 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-13
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 0


Query: 103 DAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVS 162
           D EVW +    F++ Q  LD+NR LIQ+VNENH SRI  N+  NV LI E+NGNIS+V+ 
Sbjct: 34  DVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVME 93

Query: 163 MYSDFSSDFSTVFNNNNK 181
           +YSD S +F+  F+   +
Sbjct: 94  IYSDLSLNFAKKFDQRRR 111

[Close]

BLAST of Lag0040906 vs. ExPASy Swiss-Prot
Match: Q8S8F5 (Protein ELF4-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=EFL3 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.3e-12
Identity = 32/72 (44.44%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 101 ECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKV 160
           + D ++  +F+++F QVQ++LD NR LI ++N+NH+S+I  N+  NV LI+ELN N+ +V
Sbjct: 15  QMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRNVGLIRELNNNVRRV 74

Query: 161 VSMYSDFSSDFS 173
             +Y D S++FS
Sbjct: 75  AHLYVDLSNNFS 86

[Close]

BLAST of Lag0040906 vs. ExPASy Swiss-Prot
Match: Q570U6 (Protein ELF4-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=EFL4 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.1e-11
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = 0


Query: 97  GFPD--ECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELN 156
           GF D    D ++  SF ++F  VQ +LD+NR LI ++N+NH+S+   N+  NV LI+ELN
Sbjct: 8   GFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELN 67

Query: 157 GNISKVVSMYSDFSSDFS 173
            NI +V S+Y D S  F+
Sbjct: 68  NNIRRVASLYGDLSHSFA 85

[Close]

BLAST of Lag0040906 vs. ExPASy Swiss-Prot
Match: Q94BS8 (Protein ELF4-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=EFL2 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.5e-10
Identity = 33/80 (41.25%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 95  HDGFPD--ECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQE 154
           + GF +  + D ++  +F ++F QVQ +LD+NR LI ++N+NH+S+ + ++  NV LI+E
Sbjct: 10  YSGFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNVGLIRE 69

Query: 155 LNGNISKVVSMYSDFSSDFS 173
           LN NI  V S+Y D S  F+
Sbjct: 70  LNNNIRTVASLYGDLSHSFA 89

The following BLAST results are available for this feature:

BLAST of Lag0040906 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463236.2	4.7e-57	72.22	PREDICTED: uncharacterized protein LOC103501440 [Cucumis melo]	[more]
XP_022956860.1	1.7e-51	91.54	protein EARLY FLOWERING 4-like [Cucurbita moschata] >XP_023534577.1 protein EARL...	[more]
KAG6600929.1	6.6e-51	90.77	Protein EARLY FLOWERING 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7...	[more]
XP_022976942.1	6.2e-49	89.68	protein EARLY FLOWERING 4-like [Cucurbita maxima]	[more]
XP_038892867.1	2.6e-47	87.12	protein EARLY FLOWERING 4-like [Benincasa hispida]	[more]

BLAST of Lag0040906 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04211	2.6e-21	63.41	Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana OX=3702 GN=ELF4 PE=1 SV=1	[more]
O80877	1.5e-13	50.00	Protein ELF4-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=EFL1 PE=2 SV=1	[more]
Q8S8F5	6.3e-12	44.44	Protein ELF4-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=EFL3 PE=3 SV=1	[more]
Q570U6	9.1e-11	44.87	Protein ELF4-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=EFL4 PE=2 SV=1	[more]
Q94BS8	3.5e-10	41.25	Protein ELF4-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=EFL2 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009741	Protein EARLY FLOWERING 4 domain	PFAM	PF07011	Elf4	coord: 102..180 e-value: 7.0E-35 score: 118.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..193
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..93
None	No IPR available	PANTHER	PTHR33469:SF5	PROTEIN EARLY FLOWERING 4	coord: 74..190
IPR040462	Protein EARLY FLOWERING 4	PANTHER	PTHR33469	PROTEIN ELF4-LIKE 4	coord: 74..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040906.1	Lag0040906.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009649	entrainment of circadian clock
biological_process	GO:0000122	negative regulation of transcription by RNA polymerase II
biological_process	GO:0048573	photoperiodism, flowering
biological_process	GO:0042753	positive regulation of circadian rhythm
biological_process	GO:0010017	red or far-red light signaling pathway
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0010114	response to red light
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription regulator complex
molecular_function	GO:0042803	protein homodimerization activity