Lag0040900 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040900
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protein yippee-like
Location	chr13: 9479772 .. 9480286 (-)
RNA-Seq Expression	Lag0040900
Synteny	Lag0040900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTTCTTTAGAATCAAGGTTTTAACATCTAGAAGTGCTTCATCTCATACACTTGGTTGTCATTGTCCAACATTTTCCAGGGTAAATGTCTCCCTGGGCAAGATAGAAGAGAGATTGATGATGACAGGGATGCATACAGTTGCTGATATTTTCTGTGTGGGCTGTGGATCAATAGTGGGATGGAAATATGTAAGACCAGGAGCAAAGATTTGAAATTTCAACTATTGTTTCCTTCTTACTTCTCAGCTGTTCCTGTGGTTTCTCTTTTCAGGAGACTGCCCATGAAAAGAACCAAAAGTACAAAGAGGGGAAATCTGTACTTGAGAGGTCAGTAGACAGAGTAAATATTTGGCAGTTAGAAAGTTGGAAGTCAAAGTTGAAAGAAAGTTGTGAAAGTTGAGATAGATGGGTTGTGTTGTTTGAGCAGGTTCAAAGTTTTAGGACCTGATGAAAGCAGTTACTGGGTTAGTCATGAAGCAGATGCTGGTGTAAGTGAGGGAGATGATGTTTGA

mRNA sequence

ATGAGTTTCTTTAGAATCAAGGTTTTAACATCTAGAAGTGCTTCATCTCATACACTTGGTTGTCATTGTCCAACATTTTCCAGGGTAAATGTCTCCCTGGGCAAGATAGAAGAGAGATTGATGATGACAGGGATGCATACAGTTGCTGATATTTTCTGTGTGGGCTGTGGATCAATAGTGGGATGGAAATATGAGACTGCCCATGAAAAGAACCAAAAGTACAAAGAGGGGAAATCTGTACTTGAGAGGTTCAAAGTTTTAGGACCTGATGAAAGCAGTTACTGGGTTAGTCATGAAGCAGATGCTGGTGTAAGTGAGGGAGATGATGTTTGA

Coding sequence (CDS)

ATGAGTTTCTTTAGAATCAAGGTTTTAACATCTAGAAGTGCTTCATCTCATACACTTGGTTGTCATTGTCCAACATTTTCCAGGGTAAATGTCTCCCTGGGCAAGATAGAAGAGAGATTGATGATGACAGGGATGCATACAGTTGCTGATATTTTCTGTGTGGGCTGTGGATCAATAGTGGGATGGAAATATGAGACTGCCCATGAAAAGAACCAAAAGTACAAAGAGGGGAAATCTGTACTTGAGAGGTTCAAAGTTTTAGGACCTGATGAAAGCAGTTACTGGGTTAGTCATGAAGCAGATGCTGGTGTAAGTGAGGGAGATGATGTTTGA

Protein sequence

MSFFRIKVLTSRSASSHTLGCHCPTFSRVNVSLGKIEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKNQKYKEGKSVLERFKVLGPDESSYWVSHEADAGVSEGDDV

Homology

[Close]

BLAST of Lag0040900 vs. NCBI nr
Match: XP_031740894.1 (protein yippee-like isoform X2 [Cucumis sativus] >KAE8648019.1 hypothetical protein Csa_021405 [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 1.8e-37
Identity = 78/83 (93.98%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 28  RVNVSLGKIEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKNQKYKEGKSVLERFKVL 87
           RVNV LGKIEERLMMTGMHTVADIFCVGCGS+VGWKYETAHEKNQKYKEGKSVLERFKVL
Sbjct: 53  RVNVCLGKIEERLMMTGMHTVADIFCVGCGSMVGWKYETAHEKNQKYKEGKSVLERFKVL 112

Query: 88  GPDESSYWVSHEADAGVSEGDDV 111
           GPDESS+WVSHEAD G SEGDDV
Sbjct: 113 GPDESSHWVSHEADTGGSEGDDV 135

[Close]

BLAST of Lag0040900 vs. NCBI nr
Match: XP_031740893.1 (protein yippee-like isoform X1 [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 6.9e-37
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 29  VNVSLGKIEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKNQKYKEGKSVLERFKVLG 88
           VNV LGKIEERLMMTGMHTVADIFCVGCGS+VGWKYETAHEKNQKYKEGKSVLERFKVLG
Sbjct: 93  VNVCLGKIEERLMMTGMHTVADIFCVGCGSMVGWKYETAHEKNQKYKEGKSVLERFKVLG 152

Query: 89  PDESSYWVSHEADAGVSEGDDV 111
           PDESS+WVSHEAD G SEGDDV
Sbjct: 153 PDESSHWVSHEADTGGSEGDDV 174

[Close]

BLAST of Lag0040900 vs. NCBI nr
Match: XP_004149238.1 (protein yippee-like isoform X3 [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 6.9e-37
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 29  VNVSLGKIEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKNQKYKEGKSVLERFKVLG 88
           VNV LGKIEERLMMTGMHTVADIFCVGCGS+VGWKYETAHEKNQKYKEGKSVLERFKVLG
Sbjct: 48  VNVCLGKIEERLMMTGMHTVADIFCVGCGSMVGWKYETAHEKNQKYKEGKSVLERFKVLG 107

Query: 89  PDESSYWVSHEADAGVSEGDDV 111
           PDESS+WVSHEAD G SEGDDV
Sbjct: 108 PDESSHWVSHEADTGGSEGDDV 129

[Close]

BLAST of Lag0040900 vs. NCBI nr
Match: XP_008463228.1 (PREDICTED: protein yippee-like [Cucumis melo] >XP_016902985.1 PREDICTED: protein yippee-like [Cucumis melo] >XP_016902986.1 PREDICTED: protein yippee-like [Cucumis melo] >KAA0037411.1 protein yippee-like [Cucumis melo var. makuwa] >TYJ97502.1 protein yippee-like [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 5.9e-36
Identity = 78/83 (93.98%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 29  VNVSLGKIEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKNQKYKEGKSVLERFKVLG 88
           VNV LGKIEERLMMTGMHTVADIFCVGCGS+VGWKYETAHEKNQKYKEGKSVLERFKVLG
Sbjct: 48  VNVCLGKIEERLMMTGMHTVADIFCVGCGSMVGWKYETAHEKNQKYKEGKSVLERFKVLG 107

Query: 89  PDESSYW-VSHEADAGVSEGDDV 111
           PDESS+W VSHEADAG SEGDDV
Sbjct: 108 PDESSHWGVSHEADAGGSEGDDV 130

[Close]

BLAST of Lag0040900 vs. NCBI nr
Match: XP_038893240.1 (protein yippee-like isoform X2 [Benincasa hispida])

HSP 1 Score: 153.7 bits (387), Expect = 9.3e-34
Identity = 76/82 (92.68%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 29  VNVSLGKIEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKNQKYKEGKSVLERFKVLG 88
           VNV LGKIEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKNQKYKEGKSVLERFKVLG
Sbjct: 48  VNVCLGKIEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKNQKYKEGKSVLERFKVLG 107

Query: 89  PDESSYWVSHEADAGVSEGDDV 111
           PDE+S+ VSHEADAG S GDDV
Sbjct: 108 PDENSHRVSHEADAGGS-GDDV 128

[Close]

BLAST of Lag0040900 vs. ExPASy Swiss-Prot
Match: P59234 (Protein yippee-like OS=Solanum tuberosum OX=4113 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.0e-31
Identity = 62/82 (75.61%), Postives = 69/82 (84.15%), Query Frame = 0


Query: 29  VNVSLGKIEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKNQKYKEGKSVLERFKVLG 88
           VNV+ G+IE R+MMTGMHTVADIFCV CGSIVGWKYETAHEK+QKYKEGKSVLERFK+ G
Sbjct: 48  VNVTSGEIENRMMMTGMHTVADIFCVCCGSIVGWKYETAHEKSQKYKEGKSVLERFKITG 107

Query: 89  PDESSYWVSHEADAGVSEGDDV 111
           PD S YW SH+     S+ DDV
Sbjct: 108 PDGSHYWASHDTHVAGSDADDV 129

[Close]

BLAST of Lag0040900 vs. ExPASy Swiss-Prot
Match: Q9C777 (Protein yippee-like At3g11230 OS=Arabidopsis thaliana OX=3702 GN=At3g11230 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.7e-28
Identity = 58/81 (71.60%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 29  VNVSLGKIEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKNQKYKEGKSVLERFKVLG 88
           VNV  GK E+R+MMTGMHTV DI+CV CGS VGWKYE A EKNQKYKEGKSVLER+KV G
Sbjct: 48  VNVYAGKKEDRMMMTGMHTVVDIYCVKCGSYVGWKYEFAFEKNQKYKEGKSVLERYKVWG 107

Query: 89  PDESSYWVSHEADAGVSEGDD 110
           PD ++YWV+ E +AG S+ DD
Sbjct: 108 PDGNNYWVAQEVEAGDSDTDD 128

[Close]

BLAST of Lag0040900 vs. ExPASy Swiss-Prot
Match: Q9LY56 (Protein yippee-like At3g55890 OS=Arabidopsis thaliana OX=3702 GN=At3g55890 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.9e-23
Identity = 51/81 (62.96%), Postives = 64/81 (79.01%), Query Frame = 0


Query: 29  VNVSLGKIEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKNQKYKEGKSVLERFKVLG 88
           VNVS+G+ E+R+M+TG+H V DIFCVGCGS VGWKYE AHEK+QKYKEGKSVLE +K+ G
Sbjct: 48  VNVSVGEKEDRMMITGLHNVVDIFCVGCGSNVGWKYEFAHEKSQKYKEGKSVLELYKISG 107

Query: 89  PDESSYWVSHEADAGVSEGDD 110
           P        H+++  VS+GDD
Sbjct: 108 P--------HDSNDLVSDGDD 120

[Close]

BLAST of Lag0040900 vs. ExPASy Swiss-Prot
Match: Q9SR97 (Protein yippee-like At3g08990 OS=Arabidopsis thaliana OX=3702 GN=At3g08990 PE=2 SV=2)

HSP 1 Score: 104.4 bits (259), Expect = 8.5e-22
Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = 0


Query: 29  VNVSLGKIEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKNQKYKEGKSVLERFKVLG 88
           VNV++G+ E R+M+TG HTVADIFCV CGS+VGWKYE A++K+QKYKEGK +LERFKVLG
Sbjct: 48  VNVTVGEKEHRVMITGWHTVADIFCVSCGSLVGWKYEIAYDKSQKYKEGKFILERFKVLG 107

Query: 89  PDESSY 95
           P    Y
Sbjct: 108 PYGGGY 113

[Close]

BLAST of Lag0040900 vs. ExPASy Swiss-Prot
Match: Q9FN32 (Protein yippee-like At5g53940 OS=Arabidopsis thaliana OX=3702 GN=At5g53940 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-19
Identity = 46/81 (56.79%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 29  VNVSLGKIEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKNQKYKEGKSVLERFKVLG 88
           VN+S+G +EERLM++GMHTVADIFC  CG  VGWKYE+AHEK QKYKEGK VLER +++ 
Sbjct: 48  VNISMGPLEERLMLSGMHTVADIFCCCCGQNVGWKYESAHEKAQKYKEGKFVLERGRIVD 107

Query: 89  PDESSYWVSHEADAGVSEGDD 110
             + S  V  +     S+ +D
Sbjct: 108 EIDLSTEVYIDTHGSTSDTED 128

The following BLAST results are available for this feature:

BLAST of Lag0040900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031740894.1	1.8e-37	93.98	protein yippee-like isoform X2 [Cucumis sativus] >KAE8648019.1 hypothetical prot...	[more]
XP_031740893.1	6.9e-37	93.90	protein yippee-like isoform X1 [Cucumis sativus]	[more]
XP_004149238.1	6.9e-37	93.90	protein yippee-like isoform X3 [Cucumis sativus]	[more]
XP_008463228.1	5.9e-36	93.98	PREDICTED: protein yippee-like [Cucumis melo] >XP_016902985.1 PREDICTED: protein...	[more]
XP_038893240.1	9.3e-34	92.68	protein yippee-like isoform X2 [Benincasa hispida]	[more]

BLAST of Lag0040900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P59234	2.0e-31	75.61	Protein yippee-like OS=Solanum tuberosum OX=4113 PE=2 SV=1	[more]
Q9C777	2.7e-28	71.60	Protein yippee-like At3g11230 OS=Arabidopsis thaliana OX=3702 GN=At3g11230 PE=2 ...	[more]
Q9LY56	5.9e-23	62.96	Protein yippee-like At3g55890 OS=Arabidopsis thaliana OX=3702 GN=At3g55890 PE=2 ...	[more]
Q9SR97	8.5e-22	69.70	Protein yippee-like At3g08990 OS=Arabidopsis thaliana OX=3702 GN=At3g08990 PE=2 ...	[more]
Q9FN32	1.4e-19	56.79	Protein yippee-like At5g53940 OS=Arabidopsis thaliana OX=3702 GN=At5g53940 PE=2 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004910	Yippee/Mis18/Cereblon	PFAM	PF03226	Yippee-Mis18	coord: 32..85 e-value: 2.2E-9 score: 37.4
IPR039058	Yippee family	PANTHER	PTHR13848	PROTEIN YIPPEE-LIKE CG15309-RELATED	coord: 28..110
None	No IPR available	PANTHER	PTHR13848:SF67	PROTEIN YIPPEE-LIKE	coord: 28..110
IPR034751	Yippee domain	PROSITE	PS51792	YIPPEE	coord: 1..90 score: 30.916754

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040900.1	Lag0040900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding