Lag0040879 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0040879
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionmicrotubule-associated protein 70-1
Locationchr13: 9228938 .. 9230423 (-)
RNA-Seq ExpressionLag0040879
SyntenyLag0040879
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAAATACACTTTTGGTCCCTGAGGTTTGGGTTAAGTGACACTTTGGTCCCTGAGTTTTCAAACTCAACAAAAATACCCTTGAGATTTGAGATAAGGAGCACTGTGGTCCCTGCCGTCAACTTTTCTGTTAAATTTTAACGGTTGCTGACGTGGCACTATTATTTTAATAAAAAAATTATTTTTTAATTTCTTTAAATAAAAAATATTAAAATATTATTATTATTATTATTATTATTATTATTTATTATTTCTCTCTCTTCTTCTTCTCTATTTTCTCCCTCTCCATCCTCTTCCTCCTTCTTCTTCTTCTATTTTCTCCCTCTCCATCCTCTTCCTCCTTCTTCTTCTTCTATTTTCTCCCTCTCCATCCTCTTCCTCCTTCTTCTTCTTCCTATCTCCGGCGGCCGGCGGCCACCACTCGCCGCTGCCGCCGCCCGCCGCCCGCCGGCGACTATTTGTTTTTTCTCCCTTCCCTCTTTCCACTGTTTTTTCTATATAAAAAAAAAAAAACAGAGCCCCCATTTCCCTGTCTCTTTCTCTCTCTAGATTTCATTTATACCCCTCCTAGAGAGAGAATTTAGCTCTCTTTAACAAACCCAGTTCCTCATTTCCACTCTCTTTCTCTCTTTTTCTCTCGTGGGTTTTCTTCTGTAATTGTATTCATACTTGAGTTTGGGGGTATTGTATTCTCTTGTTTCTTGTGTGTATTGTAGAGTTTTTTTTTTGTTTGATTTTGTGGTGAATGTGATGTACCCTTTGTGAGATTTGGAGCCCTAAAGTTCGTGGATCCTGGGTTGGACTTGCATTTGAATGTGAAGGGGGAGAGATTTGGGTAGGATCAGGTTATGGCGGAGATTTTCTGGCGATGGAGGTGGGTTTTTGTCGGAGGTTAGTAACGGACGGACGACGGATTCTCAGGCCACGCCGACGCCGTTGACAGTGTCAGGATCTTTCAAGGAGTGGAAAAGCTCGTCGCGGCGGTGGACGTCGATCAGGCCGAGTATGGACGTCGACAACTTCTTGAACTTGGTGCACAACTCGGATCCGGTGAAAGTGGAGCTCAATCGCCTCGAGAATAAAGTGCAAGGTGCGAAATGTGGTTCAATCTGGTGTTTTTAGAGGGACTCGGCCATGGCTCTGCCAGAGGAAGATAAGCGAACTGGGTTTTTCTCCCCAATCGATTTCGGTTCACCATTCTCCCCAAGATAAGCGCCAGATCGGGGAGGAGCACCCCTCCCGTTTCAGATCTGAAACGGGAAGGGGAGGAGCTCTCATAATCTCTCTGTTTAAAAAAAAACAGAACAAAGAAAAGAAAGGAGAAGAAGAGAATAAGGGAAGAAGAAGAAAAAAAAAATTCCGACGACCGCCGCCGCCGTTCGCCGGCTGCCAACGGTGGTCGGGCGGCGGCCGACCACCGGAGGGGAAGAGGAAAGTGATGGGAAAGGAAGAAGGGTGGGGAAAGAAGAAGATGGGGAAGTAA

mRNA sequence

ATGGAAAAAATACACTTTTGGTCCCTGAGGGGGAGAGATTTGGGTAGGATCAGGTTATGGCGGAGATTTTCTGGCGATGGAGGTGGGTTTTTGTCGGAGGTTAGTAACGGACGGACGACGGATTCTCAGGCCACGCCGACGCCGTTGACAGTGTCAGGATCTTTCAAGGAGTGGAAAAGCTCGTCGCGGCGGTGGACGTCGATCAGGCCGAGTATGGACGTCGACAACTTCTTGAACTTGGTGCACAACTCGGATCCGGTGAAAGTGGAGCTCAATCGCCTCGAGAATAAAGTGCAAGATAAGCGCCAGATCGGGGAGGAGCACCCCTCCCGTTTCAGATCTGAAACGGGAAGGGGAGGAGCTCTCATAATCTCTCTGTTTAAAAAAAAACAGAACAAAGAAAAGAAAGGAGAAGAAGAGAATAAGGGAAGAAGAAGAAAAAAAAAATTCCGACGACCGCCGCCGCCGTTCGCCGGCTGCCAACGGTGGTCGGGCGGCGGCCGACCACCGGAGGGGAAGAGGAAAGTGATGGGAAAGGAAGAAGGGTGGGGAAAGAAGAAGATGGGGAAGTAA

Coding sequence (CDS)

ATGGAAAAAATACACTTTTGGTCCCTGAGGGGGAGAGATTTGGGTAGGATCAGGTTATGGCGGAGATTTTCTGGCGATGGAGGTGGGTTTTTGTCGGAGGTTAGTAACGGACGGACGACGGATTCTCAGGCCACGCCGACGCCGTTGACAGTGTCAGGATCTTTCAAGGAGTGGAAAAGCTCGTCGCGGCGGTGGACGTCGATCAGGCCGAGTATGGACGTCGACAACTTCTTGAACTTGGTGCACAACTCGGATCCGGTGAAAGTGGAGCTCAATCGCCTCGAGAATAAAGTGCAAGATAAGCGCCAGATCGGGGAGGAGCACCCCTCCCGTTTCAGATCTGAAACGGGAAGGGGAGGAGCTCTCATAATCTCTCTGTTTAAAAAAAAACAGAACAAAGAAAAGAAAGGAGAAGAAGAGAATAAGGGAAGAAGAAGAAAAAAAAAATTCCGACGACCGCCGCCGCCGTTCGCCGGCTGCCAACGGTGGTCGGGCGGCGGCCGACCACCGGAGGGGAAGAGGAAAGTGATGGGAAAGGAAGAAGGGTGGGGAAAGAAGAAGATGGGGAAGTAA

Protein sequence

MEKIHFWSLRGRDLGRIRLWRRFSGDGGGFLSEVSNGRTTDSQATPTPLTVSGSFKEWKSSSRRWTSIRPSMDVDNFLNLVHNSDPVKVELNRLENKVQDKRQIGEEHPSRFRSETGRGGALIISLFKKKQNKEKKGEEENKGRRRKKKFRRPPPPFAGCQRWSGGGRPPEGKRKVMGKEEGWGKKKMGK
Homology
[Close]
BLAST of Lag0040879 vs. NCBI nr
Match: XP_008452405.1 (PREDICTED: microtubule-associated protein 70-1 [Cucumis melo])

HSP 1 Score: 126.7 bits (317), Expect = 2.1e-25
Identity = 69/92 (75.00%), Postives = 76/92 (82.61%), Query Frame = 0 

Query: 24  SGDGGGFLSEVSNGRTTDSQAT--------PTPLTVSGSFKEWKSSSRRWTSIRPSMDVD 83
           SGDGGGFL EVSNGR  DSQAT        PTPLTVSGSFKE KSSSRR TS+RPSMD D
Sbjct: 5   SGDGGGFLPEVSNGRGVDSQATPTQITAPSPTPLTVSGSFKEGKSSSRRRTSVRPSMDAD 64

Query: 84  NFLNLVHNSDPVKVELNRLENKVQDK-RQIGE 107
           +FLNL+H SDPVKVELNRLEN+V+DK R++GE
Sbjct: 65  DFLNLLHGSDPVKVELNRLENEVRDKDRELGE 96

[Close]
BLAST of Lag0040879 vs. NCBI nr
Match: KAA0032459.1 (microtubule-associated protein 70-1 [Cucumis melo var. makuwa] >TYJ99904.1 microtubule-associated protein 70-1 [Cucumis melo var. makuwa])

HSP 1 Score: 126.7 bits (317), Expect = 2.1e-25
Identity = 69/92 (75.00%), Postives = 76/92 (82.61%), Query Frame = 0 

Query: 24  SGDGGGFLSEVSNGRTTDSQAT--------PTPLTVSGSFKEWKSSSRRWTSIRPSMDVD 83
           SGDGGGFL EVSNGR  DSQAT        PTPLTVSGSFKE KSSSRR TS+RPSMD D
Sbjct: 5   SGDGGGFLPEVSNGRGVDSQATPTQITAPSPTPLTVSGSFKEGKSSSRRRTSVRPSMDAD 64

Query: 84  NFLNLVHNSDPVKVELNRLENKVQDK-RQIGE 107
           +FLNL+H SDPVKVELNRLEN+V+DK R++GE
Sbjct: 65  DFLNLLHGSDPVKVELNRLENEVRDKDRELGE 96

[Close]
BLAST of Lag0040879 vs. NCBI nr
Match: XP_038892547.1 (microtubule-associated protein 70-1-like [Benincasa hispida])

HSP 1 Score: 125.6 bits (314), Expect = 4.7e-25
Identity = 68/92 (73.91%), Postives = 76/92 (82.61%), Query Frame = 0 

Query: 24  SGDGGGFLSEVSNGRTTDSQAT--------PTPLTVSGSFKEWKSSSRRWTSIRPSMDVD 83
           SGDGGGFL EV+NGR  DSQAT        PTPLTVSGSFKE KSSSRR TS+RPSMD D
Sbjct: 6   SGDGGGFLPEVNNGRGVDSQATPTPITAPNPTPLTVSGSFKEGKSSSRRRTSVRPSMDAD 65

Query: 84  NFLNLVHNSDPVKVELNRLENKVQDK-RQIGE 107
           +FLNL+H SDPVKVELNRLEN+V+DK R++GE
Sbjct: 66  DFLNLLHGSDPVKVELNRLENEVRDKDRELGE 97

[Close]
BLAST of Lag0040879 vs. NCBI nr
Match: XP_023537249.1 (microtubule-associated protein 70-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.8 bits (312), Expect = 8.0e-25
Identity = 68/92 (73.91%), Postives = 75/92 (81.52%), Query Frame = 0 

Query: 24  SGDGGGFLSEVSNGRTTDSQAT--------PTPLTVSGSFKEWKSSSRRWTSIRPSMDVD 83
           SGDG GFLSEVSNGR  DSQAT        PTPLTVSGSF+E KSSSRR TS+RPSMD D
Sbjct: 5   SGDGDGFLSEVSNGRAVDSQATSTPISAPNPTPLTVSGSFREGKSSSRRRTSVRPSMDAD 64

Query: 84  NFLNLVHNSDPVKVELNRLENKVQDK-RQIGE 107
           +FLNL H SDPVKVELNRLEN+V+DK R++GE
Sbjct: 65  DFLNLFHGSDPVKVELNRLENEVRDKDRELGE 96

[Close]
BLAST of Lag0040879 vs. NCBI nr
Match: XP_022942526.1 (microtubule-associated protein 70-1-like [Cucurbita moschata] >XP_022995247.1 microtubule-associated protein 70-1-like [Cucurbita maxima])

HSP 1 Score: 122.9 bits (307), Expect = 3.1e-24
Identity = 67/92 (72.83%), Postives = 74/92 (80.43%), Query Frame = 0 

Query: 24  SGDGGGFLSEVSNGRTTDSQAT--------PTPLTVSGSFKEWKSSSRRWTSIRPSMDVD 83
           SGDG GFL EVSNGR  DSQAT        PTPLTVSGSF+E KSSSRR TS+RPSMD D
Sbjct: 5   SGDGDGFLPEVSNGRAVDSQATSTPISAPNPTPLTVSGSFREGKSSSRRRTSVRPSMDAD 64

Query: 84  NFLNLVHNSDPVKVELNRLENKVQDK-RQIGE 107
           +FLNL H SDPVKVELNRLEN+V+DK R++GE
Sbjct: 65  DFLNLFHGSDPVKVELNRLENEVRDKDRELGE 96

[Close]
BLAST of Lag0040879 vs. ExPASy Swiss-Prot
Match: Q9C9X0 (Microtubule-associated protein 70-1 OS=Arabidopsis thaliana OX=3702 GN=MAP70.1 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.8e-09
Identity = 53/118 (44.92%), Postives = 66/118 (55.93%), Query Frame = 0 

Query: 28  GGFLSEVSNGRTTDSQATPTP---LTVSGSFKEWKSSSRRWTSIRPSMDV---DNFLNLV 87
           GGFLS     + T   A PTP   LTVS S+KE KSS RR   +RPS D    + F+ L+
Sbjct: 8   GGFLSA---EQATTPVAIPTPYPSLTVSASYKE-KSSGRR-RPVRPSFDAAADNEFITLL 67

Query: 88  HNSDPVKVELNRLENKVQDKRQIGEEHPSRFRSETGRGGALIISLFKKKQNKEKKGEE 140
           H SDPVKVELNRLEN+V+DK +           E     A I +L   ++ +EK  EE
Sbjct: 68  HGSDPVKVELNRLENEVRDKDR-----------ELSEANAEIKALRLSERQREKACEE 109

[Close]
BLAST of Lag0040879 vs. ExPASy Swiss-Prot
Match: Q8L7S4 (Microtubule-associated protein 70-2 OS=Arabidopsis thaliana OX=3702 GN=MAP70.2 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-08
Identity = 48/104 (46.15%), Postives = 60/104 (57.69%), Query Frame = 0 

Query: 42  SQATPTPLTVSGSFKE---WKSSSRRWTSIRPSMDV---DNFLNLVHNSDPVKVELNRLE 101
           S AT   LTVS S+KE    KSSS+R   IRPS D    + F+ L+H SDPVKVELNRLE
Sbjct: 26  SSATYPSLTVSASYKESSGGKSSSKR-RPIRPSFDAAADNEFITLLHGSDPVKVELNRLE 85

Query: 102 NKVQDKRQIGEEHPSRFRSETGRGGALIISLFKKKQNKEKKGEE 140
           N+V+DK +           E G   A I +L   ++ +EK  EE
Sbjct: 86  NEVRDKDR-----------ELGEANAEIKALRLSERQREKAVEE 117

[Close]
BLAST of Lag0040879 vs. ExPASy Swiss-Prot
Match: Q9ZUA3 (Microtubule-associated protein 70-3 OS=Arabidopsis thaliana OX=3702 GN=MAP70.3 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-08
Identity = 55/136 (40.44%), Postives = 73/136 (53.68%), Query Frame = 0 

Query: 28  GGFLSEVSNGRTTDSQATPT------PLTVSGSFKEW------KSSSRRWTSIRPSMDVD 87
           GG+  EV+NGR T S+   T       LT+S SF+E       K  +RR  S++PS D D
Sbjct: 4   GGYAFEVNNGRPTASEFGTTARISSPSLTMSSSFREGGGGGGSKGLTRR-RSMKPSFDAD 63

Query: 88  N-FLNLVHNSDPVKVELNRLENKVQDKRQIGEEHPSRFRSETGRGGALIISLFKKKQNKE 147
           N F+ L+H SDPVKVELNRLEN V+DK +           E     A I +L   ++ +E
Sbjct: 64  NEFITLLHGSDPVKVELNRLENDVRDKDR-----------ELSESQAEIKALRLSERQRE 123

Query: 148 KKGEE--ENKGRRRKK 149
           K  EE  E  G+  +K
Sbjct: 124 KAVEELTEELGKMSEK 127

[Close]
BLAST of Lag0040879 vs. ExPASy Swiss-Prot
Match: Q6Z746 (Microtubule-associated protein 70-2 OS=Oryza sativa subsp. japonica OX=39947 GN=MAP70.2 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.6e-07
Identity = 30/58 (51.72%), Postives = 43/58 (74.14%), Query Frame = 0 

Query: 53  GSFKEWKSSSRRWTSIRPS-MDVDNFLNLVHNSDPVKVELNRLENKVQDK-RQIGEEH 109
           GS    + S+RR  +++P+ +D D  L L+H SDPVKVELNRLEN+V+DK R++G+ H
Sbjct: 10  GSASALRGSARRRGAVQPAGLDADELLTLMHGSDPVKVELNRLENEVRDKDRELGDAH 67

[Close]
BLAST of Lag0040879 vs. ExPASy Swiss-Prot
Match: Q9LQU7 (Microtubule-associated protein 70-4 OS=Arabidopsis thaliana OX=3702 GN=MAP70.4 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.6e-07
Identity = 45/105 (42.86%), Postives = 62/105 (59.05%), Query Frame = 0 

Query: 49  LTVSGSFKEW--KSSSRRWTSIRPSMDVDN-FLNLVHNSDPVKVELNRLENKVQDKRQIG 108
           L +S S++E   K  SRR  S+RPS D DN F+NL+H SDPV++ELNRLEN+V+DK +  
Sbjct: 11  LAISASYREGGSKGMSRR-RSMRPSFDADNEFMNLLHGSDPVRIELNRLENEVRDKDR-- 70

Query: 109 EEHPSRFRSETGRGGALIISLFKKKQNKEKKGEE--ENKGRRRKK 149
                    E   G A I +L   ++ +EK  EE  E  G+  +K
Sbjct: 71  ---------ELSEGQAEIKALRLSERQREKAVEELTEELGKMAEK 103

The following BLAST results are available for this feature:
BLAST of Lag0040879 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008452405.12.1e-2575.00PREDICTED: microtubule-associated protein 70-1 [Cucumis melo][more]
KAA0032459.12.1e-2575.00microtubule-associated protein 70-1 [Cucumis melo var. makuwa] >TYJ99904.1 micro... [more]
XP_038892547.14.7e-2573.91microtubule-associated protein 70-1-like [Benincasa hispida][more]
XP_023537249.18.0e-2573.91microtubule-associated protein 70-1-like [Cucurbita pepo subsp. pepo][more]
XP_022942526.13.1e-2472.83microtubule-associated protein 70-1-like [Cucurbita moschata] >XP_022995247.1 mi... [more]
BLAST of Lag0040879 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9C9X03.8e-0944.92Microtubule-associated protein 70-1 OS=Arabidopsis thaliana OX=3702 GN=MAP70.1 P... [more]
Q8L7S41.9e-0846.15Microtubule-associated protein 70-2 OS=Arabidopsis thaliana OX=3702 GN=MAP70.2 P... [more]
Q9ZUA31.9e-0840.44Microtubule-associated protein 70-3 OS=Arabidopsis thaliana OX=3702 GN=MAP70.3 P... [more]
Q6Z7461.6e-0751.72Microtubule-associated protein 70-2 OS=Oryza sativa subsp. japonica OX=39947 GN=... [more]
Q9LQU74.6e-0742.86Microtubule-associated protein 70-4 OS=Arabidopsis thaliana OX=3702 GN=MAP70.4 P... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009768Microtubule-associated protein 70PFAMPF07058MAP70coord: 75..106
e-value: 1.0E-7
score: 31.1
IPR009768Microtubule-associated protein 70PANTHERPTHR31246MICROTUBULE-ASSOCIATED PROTEIN 70-2coord: 42..103
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 168..190
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..190
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..119
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..114
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..144
NoneNo IPR availablePANTHERPTHR31246:SF15MICROTUBULE-ASSOCIATED PROTEIN 70-1coord: 42..103

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0040879.1Lag0040879.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007010 cytoskeleton organization
molecular_function GO:0008017 microtubule binding