Lag0040879 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040879
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	microtubule-associated protein 70-1
Location	chr13: 9228938 .. 9230423 (-)
RNA-Seq Expression	Lag0040879
Synteny	Lag0040879

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAAATACACTTTTGGTCCCTGAGGTTTGGGTTAAGTGACACTTTGGTCCCTGAGTTTTCAAACTCAACAAAAATACCCTTGAGATTTGAGATAAGGAGCACTGTGGTCCCTGCCGTCAACTTTTCTGTTAAATTTTAACGGTTGCTGACGTGGCACTATTATTTTAATAAAAAAATTATTTTTTAATTTCTTTAAATAAAAAATATTAAAATATTATTATTATTATTATTATTATTATTATTTATTATTTCTCTCTCTTCTTCTTCTCTATTTTCTCCCTCTCCATCCTCTTCCTCCTTCTTCTTCTTCTATTTTCTCCCTCTCCATCCTCTTCCTCCTTCTTCTTCTTCTATTTTCTCCCTCTCCATCCTCTTCCTCCTTCTTCTTCTTCCTATCTCCGGCGGCCGGCGGCCACCACTCGCCGCTGCCGCCGCCCGCCGCCCGCCGGCGACTATTTGTTTTTTCTCCCTTCCCTCTTTCCACTGTTTTTTCTATATAAAAAAAAAAAAACAGAGCCCCCATTTCCCTGTCTCTTTCTCTCTCTAGATTTCATTTATACCCCTCCTAGAGAGAGAATTTAGCTCTCTTTAACAAACCCAGTTCCTCATTTCCACTCTCTTTCTCTCTTTTTCTCTCGTGGGTTTTCTTCTGTAATTGTATTCATACTTGAGTTTGGGGGTATTGTATTCTCTTGTTTCTTGTGTGTATTGTAGAGTTTTTTTTTTGTTTGATTTTGTGGTGAATGTGATGTACCCTTTGTGAGATTTGGAGCCCTAAAGTTCGTGGATCCTGGGTTGGACTTGCATTTGAATGTGAAGGGGGAGAGATTTGGGTAGGATCAGGTTATGGCGGAGATTTTCTGGCGATGGAGGTGGGTTTTTGTCGGAGGTTAGTAACGGACGGACGACGGATTCTCAGGCCACGCCGACGCCGTTGACAGTGTCAGGATCTTTCAAGGAGTGGAAAAGCTCGTCGCGGCGGTGGACGTCGATCAGGCCGAGTATGGACGTCGACAACTTCTTGAACTTGGTGCACAACTCGGATCCGGTGAAAGTGGAGCTCAATCGCCTCGAGAATAAAGTGCAAGGTGCGAAATGTGGTTCAATCTGGTGTTTTTAGAGGGACTCGGCCATGGCTCTGCCAGAGGAAGATAAGCGAACTGGGTTTTTCTCCCCAATCGATTTCGGTTCACCATTCTCCCCAAGATAAGCGCCAGATCGGGGAGGAGCACCCCTCCCGTTTCAGATCTGAAACGGGAAGGGGAGGAGCTCTCATAATCTCTCTGTTTAAAAAAAAACAGAACAAAGAAAAGAAAGGAGAAGAAGAGAATAAGGGAAGAAGAAGAAAAAAAAAATTCCGACGACCGCCGCCGCCGTTCGCCGGCTGCCAACGGTGGTCGGGCGGCGGCCGACCACCGGAGGGGAAGAGGAAAGTGATGGGAAAGGAAGAAGGGTGGGGAAAGAAGAAGATGGGGAAGTAA

mRNA sequence

ATGGAAAAAATACACTTTTGGTCCCTGAGGGGGAGAGATTTGGGTAGGATCAGGTTATGGCGGAGATTTTCTGGCGATGGAGGTGGGTTTTTGTCGGAGGTTAGTAACGGACGGACGACGGATTCTCAGGCCACGCCGACGCCGTTGACAGTGTCAGGATCTTTCAAGGAGTGGAAAAGCTCGTCGCGGCGGTGGACGTCGATCAGGCCGAGTATGGACGTCGACAACTTCTTGAACTTGGTGCACAACTCGGATCCGGTGAAAGTGGAGCTCAATCGCCTCGAGAATAAAGTGCAAGATAAGCGCCAGATCGGGGAGGAGCACCCCTCCCGTTTCAGATCTGAAACGGGAAGGGGAGGAGCTCTCATAATCTCTCTGTTTAAAAAAAAACAGAACAAAGAAAAGAAAGGAGAAGAAGAGAATAAGGGAAGAAGAAGAAAAAAAAAATTCCGACGACCGCCGCCGCCGTTCGCCGGCTGCCAACGGTGGTCGGGCGGCGGCCGACCACCGGAGGGGAAGAGGAAAGTGATGGGAAAGGAAGAAGGGTGGGGAAAGAAGAAGATGGGGAAGTAA

Coding sequence (CDS)

ATGGAAAAAATACACTTTTGGTCCCTGAGGGGGAGAGATTTGGGTAGGATCAGGTTATGGCGGAGATTTTCTGGCGATGGAGGTGGGTTTTTGTCGGAGGTTAGTAACGGACGGACGACGGATTCTCAGGCCACGCCGACGCCGTTGACAGTGTCAGGATCTTTCAAGGAGTGGAAAAGCTCGTCGCGGCGGTGGACGTCGATCAGGCCGAGTATGGACGTCGACAACTTCTTGAACTTGGTGCACAACTCGGATCCGGTGAAAGTGGAGCTCAATCGCCTCGAGAATAAAGTGCAAGATAAGCGCCAGATCGGGGAGGAGCACCCCTCCCGTTTCAGATCTGAAACGGGAAGGGGAGGAGCTCTCATAATCTCTCTGTTTAAAAAAAAACAGAACAAAGAAAAGAAAGGAGAAGAAGAGAATAAGGGAAGAAGAAGAAAAAAAAAATTCCGACGACCGCCGCCGCCGTTCGCCGGCTGCCAACGGTGGTCGGGCGGCGGCCGACCACCGGAGGGGAAGAGGAAAGTGATGGGAAAGGAAGAAGGGTGGGGAAAGAAGAAGATGGGGAAGTAA

Protein sequence

MEKIHFWSLRGRDLGRIRLWRRFSGDGGGFLSEVSNGRTTDSQATPTPLTVSGSFKEWKSSSRRWTSIRPSMDVDNFLNLVHNSDPVKVELNRLENKVQDKRQIGEEHPSRFRSETGRGGALIISLFKKKQNKEKKGEEENKGRRRKKKFRRPPPPFAGCQRWSGGGRPPEGKRKVMGKEEGWGKKKMGK

Homology

[Close]

BLAST of Lag0040879 vs. NCBI nr
Match: XP_008452405.1 (PREDICTED: microtubule-associated protein 70-1 [Cucumis melo])

HSP 1 Score: 126.7 bits (317), Expect = 2.1e-25
Identity = 69/92 (75.00%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 24  SGDGGGFLSEVSNGRTTDSQAT--------PTPLTVSGSFKEWKSSSRRWTSIRPSMDVD 83
           SGDGGGFL EVSNGR  DSQAT        PTPLTVSGSFKE KSSSRR TS+RPSMD D
Sbjct: 5   SGDGGGFLPEVSNGRGVDSQATPTQITAPSPTPLTVSGSFKEGKSSSRRRTSVRPSMDAD 64

Query: 84  NFLNLVHNSDPVKVELNRLENKVQDK-RQIGE 107
           +FLNL+H SDPVKVELNRLEN+V+DK R++GE
Sbjct: 65  DFLNLLHGSDPVKVELNRLENEVRDKDRELGE 96

[Close]

BLAST of Lag0040879 vs. NCBI nr
Match: KAA0032459.1 (microtubule-associated protein 70-1 [Cucumis melo var. makuwa] >TYJ99904.1 microtubule-associated protein 70-1 [Cucumis melo var. makuwa])

HSP 1 Score: 126.7 bits (317), Expect = 2.1e-25
Identity = 69/92 (75.00%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 24  SGDGGGFLSEVSNGRTTDSQAT--------PTPLTVSGSFKEWKSSSRRWTSIRPSMDVD 83
           SGDGGGFL EVSNGR  DSQAT        PTPLTVSGSFKE KSSSRR TS+RPSMD D
Sbjct: 5   SGDGGGFLPEVSNGRGVDSQATPTQITAPSPTPLTVSGSFKEGKSSSRRRTSVRPSMDAD 64

Query: 84  NFLNLVHNSDPVKVELNRLENKVQDK-RQIGE 107
           +FLNL+H SDPVKVELNRLEN+V+DK R++GE
Sbjct: 65  DFLNLLHGSDPVKVELNRLENEVRDKDRELGE 96

[Close]

BLAST of Lag0040879 vs. NCBI nr
Match: XP_038892547.1 (microtubule-associated protein 70-1-like [Benincasa hispida])

HSP 1 Score: 125.6 bits (314), Expect = 4.7e-25
Identity = 68/92 (73.91%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 24  SGDGGGFLSEVSNGRTTDSQAT--------PTPLTVSGSFKEWKSSSRRWTSIRPSMDVD 83
           SGDGGGFL EV+NGR  DSQAT        PTPLTVSGSFKE KSSSRR TS+RPSMD D
Sbjct: 6   SGDGGGFLPEVNNGRGVDSQATPTPITAPNPTPLTVSGSFKEGKSSSRRRTSVRPSMDAD 65

Query: 84  NFLNLVHNSDPVKVELNRLENKVQDK-RQIGE 107
           +FLNL+H SDPVKVELNRLEN+V+DK R++GE
Sbjct: 66  DFLNLLHGSDPVKVELNRLENEVRDKDRELGE 97

[Close]

BLAST of Lag0040879 vs. NCBI nr
Match: XP_023537249.1 (microtubule-associated protein 70-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.8 bits (312), Expect = 8.0e-25
Identity = 68/92 (73.91%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 24  SGDGGGFLSEVSNGRTTDSQAT--------PTPLTVSGSFKEWKSSSRRWTSIRPSMDVD 83
           SGDG GFLSEVSNGR  DSQAT        PTPLTVSGSF+E KSSSRR TS+RPSMD D
Sbjct: 5   SGDGDGFLSEVSNGRAVDSQATSTPISAPNPTPLTVSGSFREGKSSSRRRTSVRPSMDAD 64

Query: 84  NFLNLVHNSDPVKVELNRLENKVQDK-RQIGE 107
           +FLNL H SDPVKVELNRLEN+V+DK R++GE
Sbjct: 65  DFLNLFHGSDPVKVELNRLENEVRDKDRELGE 96

[Close]

BLAST of Lag0040879 vs. NCBI nr
Match: XP_022942526.1 (microtubule-associated protein 70-1-like [Cucurbita moschata] >XP_022995247.1 microtubule-associated protein 70-1-like [Cucurbita maxima])

HSP 1 Score: 122.9 bits (307), Expect = 3.1e-24
Identity = 67/92 (72.83%), Postives = 74/92 (80.43%), Query Frame = 0


Query: 24  SGDGGGFLSEVSNGRTTDSQAT--------PTPLTVSGSFKEWKSSSRRWTSIRPSMDVD 83
           SGDG GFL EVSNGR  DSQAT        PTPLTVSGSF+E KSSSRR TS+RPSMD D
Sbjct: 5   SGDGDGFLPEVSNGRAVDSQATSTPISAPNPTPLTVSGSFREGKSSSRRRTSVRPSMDAD 64

Query: 84  NFLNLVHNSDPVKVELNRLENKVQDK-RQIGE 107
           +FLNL H SDPVKVELNRLEN+V+DK R++GE
Sbjct: 65  DFLNLFHGSDPVKVELNRLENEVRDKDRELGE 96

[Close]

BLAST of Lag0040879 vs. ExPASy Swiss-Prot
Match: Q9C9X0 (Microtubule-associated protein 70-1 OS=Arabidopsis thaliana OX=3702 GN=MAP70.1 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.8e-09
Identity = 53/118 (44.92%), Postives = 66/118 (55.93%), Query Frame = 0


Query: 28  GGFLSEVSNGRTTDSQATPTP---LTVSGSFKEWKSSSRRWTSIRPSMDV---DNFLNLV 87
           GGFLS     + T   A PTP   LTVS S+KE KSS RR   +RPS D    + F+ L+
Sbjct: 8   GGFLSA---EQATTPVAIPTPYPSLTVSASYKE-KSSGRR-RPVRPSFDAAADNEFITLL 67

Query: 88  HNSDPVKVELNRLENKVQDKRQIGEEHPSRFRSETGRGGALIISLFKKKQNKEKKGEE 140
           H SDPVKVELNRLEN+V+DK +           E     A I +L   ++ +EK  EE
Sbjct: 68  HGSDPVKVELNRLENEVRDKDR-----------ELSEANAEIKALRLSERQREKACEE 109

[Close]

BLAST of Lag0040879 vs. ExPASy Swiss-Prot
Match: Q8L7S4 (Microtubule-associated protein 70-2 OS=Arabidopsis thaliana OX=3702 GN=MAP70.2 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-08
Identity = 48/104 (46.15%), Postives = 60/104 (57.69%), Query Frame = 0


Query: 42  SQATPTPLTVSGSFKE---WKSSSRRWTSIRPSMDV---DNFLNLVHNSDPVKVELNRLE 101
           S AT   LTVS S+KE    KSSS+R   IRPS D    + F+ L+H SDPVKVELNRLE
Sbjct: 26  SSATYPSLTVSASYKESSGGKSSSKR-RPIRPSFDAAADNEFITLLHGSDPVKVELNRLE 85

Query: 102 NKVQDKRQIGEEHPSRFRSETGRGGALIISLFKKKQNKEKKGEE 140
           N+V+DK +           E G   A I +L   ++ +EK  EE
Sbjct: 86  NEVRDKDR-----------ELGEANAEIKALRLSERQREKAVEE 117

[Close]

BLAST of Lag0040879 vs. ExPASy Swiss-Prot
Match: Q9ZUA3 (Microtubule-associated protein 70-3 OS=Arabidopsis thaliana OX=3702 GN=MAP70.3 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-08
Identity = 55/136 (40.44%), Postives = 73/136 (53.68%), Query Frame = 0


Query: 28  GGFLSEVSNGRTTDSQATPT------PLTVSGSFKEW------KSSSRRWTSIRPSMDVD 87
           GG+  EV+NGR T S+   T       LT+S SF+E       K  +RR  S++PS D D
Sbjct: 4   GGYAFEVNNGRPTASEFGTTARISSPSLTMSSSFREGGGGGGSKGLTRR-RSMKPSFDAD 63

Query: 88  N-FLNLVHNSDPVKVELNRLENKVQDKRQIGEEHPSRFRSETGRGGALIISLFKKKQNKE 147
           N F+ L+H SDPVKVELNRLEN V+DK +           E     A I +L   ++ +E
Sbjct: 64  NEFITLLHGSDPVKVELNRLENDVRDKDR-----------ELSESQAEIKALRLSERQRE 123

Query: 148 KKGEE--ENKGRRRKK 149
           K  EE  E  G+  +K
Sbjct: 124 KAVEELTEELGKMSEK 127

[Close]

BLAST of Lag0040879 vs. ExPASy Swiss-Prot
Match: Q6Z746 (Microtubule-associated protein 70-2 OS=Oryza sativa subsp. japonica OX=39947 GN=MAP70.2 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.6e-07
Identity = 30/58 (51.72%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 53  GSFKEWKSSSRRWTSIRPS-MDVDNFLNLVHNSDPVKVELNRLENKVQDK-RQIGEEH 109
           GS    + S+RR  +++P+ +D D  L L+H SDPVKVELNRLEN+V+DK R++G+ H
Sbjct: 10  GSASALRGSARRRGAVQPAGLDADELLTLMHGSDPVKVELNRLENEVRDKDRELGDAH 67

[Close]

BLAST of Lag0040879 vs. ExPASy Swiss-Prot
Match: Q9LQU7 (Microtubule-associated protein 70-4 OS=Arabidopsis thaliana OX=3702 GN=MAP70.4 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.6e-07
Identity = 45/105 (42.86%), Postives = 62/105 (59.05%), Query Frame = 0


Query: 49  LTVSGSFKEW--KSSSRRWTSIRPSMDVDN-FLNLVHNSDPVKVELNRLENKVQDKRQIG 108
           L +S S++E   K  SRR  S+RPS D DN F+NL+H SDPV++ELNRLEN+V+DK +  
Sbjct: 11  LAISASYREGGSKGMSRR-RSMRPSFDADNEFMNLLHGSDPVRIELNRLENEVRDKDR-- 70

Query: 109 EEHPSRFRSETGRGGALIISLFKKKQNKEKKGEE--ENKGRRRKK 149
                    E   G A I +L   ++ +EK  EE  E  G+  +K
Sbjct: 71  ---------ELSEGQAEIKALRLSERQREKAVEELTEELGKMAEK 103

The following BLAST results are available for this feature:

BLAST of Lag0040879 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008452405.1	2.1e-25	75.00	PREDICTED: microtubule-associated protein 70-1 [Cucumis melo]	[more]
KAA0032459.1	2.1e-25	75.00	microtubule-associated protein 70-1 [Cucumis melo var. makuwa] >TYJ99904.1 micro...	[more]
XP_038892547.1	4.7e-25	73.91	microtubule-associated protein 70-1-like [Benincasa hispida]	[more]
XP_023537249.1	8.0e-25	73.91	microtubule-associated protein 70-1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022942526.1	3.1e-24	72.83	microtubule-associated protein 70-1-like [Cucurbita moschata] >XP_022995247.1 mi...	[more]

BLAST of Lag0040879 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C9X0	3.8e-09	44.92	Microtubule-associated protein 70-1 OS=Arabidopsis thaliana OX=3702 GN=MAP70.1 P...	[more]
Q8L7S4	1.9e-08	46.15	Microtubule-associated protein 70-2 OS=Arabidopsis thaliana OX=3702 GN=MAP70.2 P...	[more]
Q9ZUA3	1.9e-08	40.44	Microtubule-associated protein 70-3 OS=Arabidopsis thaliana OX=3702 GN=MAP70.3 P...	[more]
Q6Z746	1.6e-07	51.72	Microtubule-associated protein 70-2 OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]
Q9LQU7	4.6e-07	42.86	Microtubule-associated protein 70-4 OS=Arabidopsis thaliana OX=3702 GN=MAP70.4 P...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009768	Microtubule-associated protein 70	PFAM	PF07058	MAP70	coord: 75..106 e-value: 1.0E-7 score: 31.1
IPR009768	Microtubule-associated protein 70	PANTHER	PTHR31246	MICROTUBULE-ASSOCIATED PROTEIN 70-2	coord: 42..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..190
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..190
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..119
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..144
None	No IPR available	PANTHER	PTHR31246:SF15	MICROTUBULE-ASSOCIATED PROTEIN 70-1	coord: 42..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040879.1	Lag0040879.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007010	cytoskeleton organization
molecular_function	GO:0008017	microtubule binding