Lag0040878 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040878
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	GATA type zinc finger transcription factor family protein
Location	chr13: 9224487 .. 9226296 (-)
RNA-Seq Expression	Lag0040878
Synteny	Lag0040878

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTTCATTGGCACCCAACAGAAGTGCAAAGCTTGTGAGAAGACTGTGTACCCTGTAGATCAGTTATCTGCTGATGGAGTTGCTTTCCACAAGTCATGTTTCAAATGTAGCCATTGCAAAGGAACTTTGAAGGTACATCACTATATTTTCAGGACTCATTTATAGCTTCTCCTTTTGTTATCCTTCATGTCTTTAATTTTCTGGCCTCACTTGAACTTCAAAAGGAATAGAGACGCGGATCTATAAGTTCAAAAATTGTAGGGAGGGAGTATCTAAGAGACTGTTTTCAAAACAGCAATGATTAAGTAAAAACAATTTGGGTAACTGTTTTCTTTTCCCTATTGATGTTATGTTTTTCTGAACAACTAAAGTTGGTTTTTCTCCCACATGAATCTTAACTTTAAAAGCCATCTAGTCACAGCTCTTAAAAACAATCTTGAAAAAGAAAACAGATAACAGCCTCCCAAAGAAGTCTTTAGTTTCATTTATTATCTCTCCTCTCTCATAGCCATTGTTTATAGTATTGCTCTCTCTCTCTCTCTTCTTTGGAGGGTTTTCGTGAACAATTAGAGTAAGTACTGTGTGGTGTTTAAAAGGTAAACGCATAAAAACTAAGCTACAGCTTATATATACATGATTACGAATACCGAGCATTTATTTTGGGTCAGCATATGAGAACTTTTCTGAAATGACTTGTCAAATGCTTTCAGCTGAGTAATTATTCTTCAATGGAAGGTGTTCTGTACTGTCAGCCTCATTTTAATCAGCTCTTCAAGGAAACTGGAAACTTCAGCAAGAACTTTCTATCTCGTATGTTCCAAACTTTGCCAAATACAGAAGACACTCTACATTTGATCTTGTAGCTATTGCTTTTTACTAACATTTTCCATATTTTTCTTTTTCTACAGCTGCAAAGTCCGCTGATAAGCCAACCCCAGAACTGGTAAATTTAACCCCCAATGCAGCAACTAGTTGTGATTAAATTTATAAGCAGTCGCTCATCCCATAGCTTCTTTTTGGTTCCAGACTAGGTCACCGAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAAAAATGTGCTACATGTGGAAAAACTGCATATCCACTGGAGAAGGTTAGTTTAGAAGACGTTAGAAAGATATTCAAACATTTAAAACCTGCTCAATCGCACTAATCATCCATTGTCTTACTCTTTTCGAACCGTCTGCGTATATATTAATATGATGCACTAAATCATCTTTCTGCTGGTGTTTGAATCTATTTTGTATCCTATCATTTTCGACATTTACATATTGACGTCGAAAAGAAAGGGATAATCCTTAAAGCTACTACATTTAAATGAGTTGGTTTTCTGAACGGCTTGAATGTTGCTCTTGTTTAAGCCAACTAGTGATCTGTAGGCTTTTAGGAACTGTGGAAGTTACTTGTTCTCAATTGCTTAATCTATAGTATTTACTGCTGAGGTAGAAATGGTTCCATCTCAATTTTCAAGTAGTTTTGCTGGTGTTGGTACTATGAATGCATCTGTGCAAATATTATTTTATCGGTAACGGTTCGCGGGAATTGCTTGTTTGCAGGTGACAGTTGAGAGTCAAGCCTATCACAAGTCGTGTTTTAAATGCTCACACGGTGGCTGTTCTTTATCTCCATCAAACTATGCTGCACTTGATGGAATTTTGTACTGCAAACACCACTTTTCACAACTTTTCAAGGAAAAGGGAAGCTACAACCATCTGATCAAGTCTGCATCAATGAAGCGTCAAGCAGCAACCTCCGATCCGGACGCTTCAAAGGTCGAGTTATAA

mRNA sequence

ATGTCGTTCATTGGCACCCAACAGAAGTGCAAAGCTTGTGAGAAGACTGTGTACCCTGTAGATCAGTTATCTGCTGATGGAGTTGCTTTCCACAAGTCATGTTTCAAATGTAGCCATTGCAAAGGAACTTTGAAGCTGAGTAATTATTCTTCAATGGAAGGTGTTCTGTACTGTCAGCCTCATTTTAATCAGCTCTTCAAGGAAACTGGAAACTTCAGCAAGAACTTTCTATCTCCTGCAAAGTCCGCTGATAAGCCAACCCCAGAACTGACTAGGTCACCGAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAAAAATGTGCTACATGTGGAAAAACTGCATATCCACTGGAGAAGGTGACAGTTGAGAGTCAAGCCTATCACAAGTCGTGTTTTAAATGCTCACACGGTGGCTGTTCTTTATCTCCATCAAACTATGCTGCACTTGATGGAATTTTGTACTGCAAACACCACTTTTCACAACTTTTCAAGGAAAAGGGAAGCTACAACCATCTGATCAAGTCTGCATCAATGAAGCGTCAAGCAGCAACCTCCGATCCGGACGCTTCAAAGGTCGAGTTATAA

Coding sequence (CDS)

ATGTCGTTCATTGGCACCCAACAGAAGTGCAAAGCTTGTGAGAAGACTGTGTACCCTGTAGATCAGTTATCTGCTGATGGAGTTGCTTTCCACAAGTCATGTTTCAAATGTAGCCATTGCAAAGGAACTTTGAAGCTGAGTAATTATTCTTCAATGGAAGGTGTTCTGTACTGTCAGCCTCATTTTAATCAGCTCTTCAAGGAAACTGGAAACTTCAGCAAGAACTTTCTATCTCCTGCAAAGTCCGCTGATAAGCCAACCCCAGAACTGACTAGGTCACCGAGCAAAGCTGCCAGCATGTTTTCTGGGACACAAGAAAAATGTGCTACATGTGGAAAAACTGCATATCCACTGGAGAAGGTGACAGTTGAGAGTCAAGCCTATCACAAGTCGTGTTTTAAATGCTCACACGGTGGCTGTTCTTTATCTCCATCAAACTATGCTGCACTTGATGGAATTTTGTACTGCAAACACCACTTTTCACAACTTTTCAAGGAAAAGGGAAGCTACAACCATCTGATCAAGTCTGCATCAATGAAGCGTCAAGCAGCAACCTCCGATCCGGACGCTTCAAAGGTCGAGTTATAA

Protein sequence

MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCKGTLKLSNYSSMEGVLYCQPHFNQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMKRQAATSDPDASKVEL

Homology

[Close]

BLAST of Lag0040878 vs. NCBI nr
Match: XP_023549082.1 (LIM domain-containing protein WLIM2b-like [Cucurbita pepo subsp. pepo] >XP_023549090.1 LIM domain-containing protein WLIM2b-like [Cucurbita pepo subsp. pepo] >XP_023549098.1 LIM domain-containing protein WLIM2b-like [Cucurbita pepo subsp. pepo] >XP_023549105.1 LIM domain-containing protein WLIM2b-like [Cucurbita pepo subsp. pepo] >XP_023549115.1 LIM domain-containing protein WLIM2b-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 394.4 bits (1012), Expect = 5.6e-106
Identity = 189/195 (96.92%), Postives = 190/195 (97.44%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCKGTLKLSNYSSMEGVLYCQP 60
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHK CFKCSHCKGTLKLSNYSSMEGVLYC+P
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFNQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HF QLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAA MFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQAATSDPDASKVEL 196
           RQAA SDPD SKVEL
Sbjct: 181 RQAAISDPDTSKVEL 195

[Close]

BLAST of Lag0040878 vs. NCBI nr
Match: XP_022996549.1 (LIM domain-containing protein WLIM2a-like [Cucurbita maxima] >XP_022996558.1 LIM domain-containing protein WLIM2a-like [Cucurbita maxima] >XP_022996568.1 LIM domain-containing protein WLIM2a-like [Cucurbita maxima] >XP_022996576.1 LIM domain-containing protein WLIM2a-like [Cucurbita maxima] >XP_022996583.1 LIM domain-containing protein WLIM2a-like [Cucurbita maxima])

HSP 1 Score: 394.0 bits (1011), Expect = 7.3e-106
Identity = 189/195 (96.92%), Postives = 191/195 (97.95%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCKGTLKLSNYSSMEGVLYCQP 60
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHK CFKCSHCKGTLKLSNYSSMEGVLYC+P
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFNQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HF QLFKETGNFSKNFLSPAKSADKPTPEL RSPSKAA MFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELNRSPSKAARMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQAATSDPDASKVEL 196
           RQAATSDP+ASKVEL
Sbjct: 181 RQAATSDPNASKVEL 195

[Close]

BLAST of Lag0040878 vs. NCBI nr
Match: XP_022156896.1 (LIM domain-containing protein WLIM2b-like [Momordica charantia] >XP_022156897.1 LIM domain-containing protein WLIM2b-like [Momordica charantia] >XP_022156898.1 LIM domain-containing protein WLIM2b-like [Momordica charantia])

HSP 1 Score: 393.7 bits (1010), Expect = 9.5e-106
Identity = 189/195 (96.92%), Postives = 190/195 (97.44%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCKGTLKLSNYSSMEGVLYCQP 60
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCKGTLKLSNYSSMEGVLYC+P
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFNQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HF QLFKETGNFSKNFLSPAKS DKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSTDKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQAATSDPDASKVEL 196
           RQAATS PDA  VEL
Sbjct: 181 RQAATSVPDAENVEL 195

[Close]

BLAST of Lag0040878 vs. NCBI nr
Match: XP_004150238.1 (LIM domain-containing protein WLIM2b [Cucumis sativus] >XP_031741833.1 LIM domain-containing protein WLIM2b [Cucumis sativus] >KGN50627.1 hypothetical protein Csa_021390 [Cucumis sativus])

HSP 1 Score: 392.5 bits (1007), Expect = 2.1e-105
Identity = 186/194 (95.88%), Postives = 192/194 (98.97%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCKGTLKLSNYSSMEGVLYCQP 60
           MSFIGTQQKCKAC+KTVYPVDQLSADGV+FHKSCFKCSHCKGTLKLSNYSSM+GVLYC+P
Sbjct: 1   MSFIGTQQKCKACDKTVYPVDQLSADGVSFHKSCFKCSHCKGTLKLSNYSSMDGVLYCKP 60

Query: 61  HFNQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HF QLFKETGNFSKNFLSPAKS++KPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQAATSDPDASKVE 195
           RQAATSDPD SKVE
Sbjct: 181 RQAATSDPDPSKVE 194

[Close]

BLAST of Lag0040878 vs. NCBI nr
Match: XP_038891809.1 (LIM domain-containing protein WLIM2b-like [Benincasa hispida] >XP_038891810.1 LIM domain-containing protein WLIM2b-like [Benincasa hispida] >XP_038891811.1 LIM domain-containing protein WLIM2b-like [Benincasa hispida])

HSP 1 Score: 391.7 bits (1005), Expect = 3.6e-105
Identity = 187/194 (96.39%), Postives = 191/194 (98.45%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCKGTLKLSNYSSMEGVLYCQP 60
           MSF+GTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCKGTLKLSNYSSMEGVLYC+P
Sbjct: 1   MSFVGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFNQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HF QLFKETGNFSKNFLSPAKS++KPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQAATSDPDASKVE 195
           RQAATSD D SKVE
Sbjct: 181 RQAATSDLDPSKVE 194

[Close]

BLAST of Lag0040878 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 6.4e-89
Identity = 151/186 (81.18%), Postives = 168/186 (90.32%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCKGTLKLSNYSSMEGVLYCQP 60
           MSF GTQQKCKACEKTVY V+ LSADGV +HKSCFKC+HCK  L+LS+YSSMEGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFNQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HF QLFKE+G+F+KNF SPAKSADK TPELTR+PS+ A  FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RQAATS 187
           R AA +
Sbjct: 181 RSAAAA 186

[Close]

BLAST of Lag0040878 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 9.3e-88
Identity = 150/194 (77.32%), Postives = 171/194 (88.14%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCKGTLKLSNYSSMEGVLYCQP 60
           MSF GTQQKC+ACEKTVYPV+ LSADG+++HK+CFKCSHCK  L+LSNYSSMEGV+YC+P
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFNQLFKETGNFSKNFLSPAKS-ADKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLE 120
           HF QLFKE+G+FSKNF SPAK   DKPTPEL R+PS+ A MFSGTQ+KCATC KT YP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASM 180
           KVTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNHLIKSAS+
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 180

Query: 181 KRQAATSDPDASKV 194
           KR  A +   A+ V
Sbjct: 181 KRATAAATAAAAAV 194

[Close]

BLAST of Lag0040878 vs. ExPASy Swiss-Prot
Match: O80839 (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 5.1e-70
Identity = 119/186 (63.98%), Postives = 154/186 (82.80%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCKGTLKLSNYSSMEGVLYCQP 60
           MSF GT  KCKAC+KTVY +D L+ +G  +HKSCF+C+HCKGTL +SNYSSM+GVLYC+P
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFNQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HF QLFKE+GN+SKNF   A   +KP   LTR+PSK +S FSGTQ+KCATC KT YPLEK
Sbjct: 61  HFEQLFKESGNYSKNF--QAGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VT+E ++YHK+CF+C+H GC L+ S+YA+L+G+LYCK HF+QLF EKGSYNH+ ++A+  
Sbjct: 121 VTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHVHQAAANH 180

Query: 181 RQAATS 187
           R++A+S
Sbjct: 181 RRSASS 184

[Close]

BLAST of Lag0040878 vs. ExPASy Swiss-Prot
Match: Q7F9R9 (LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.8e-68
Identity = 118/177 (66.67%), Postives = 142/177 (80.23%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCKGTLKLSNYSSMEGVLYCQP 60
           MSF GTQ KC AC+KTV+ +D L+ADGV +HK+CFKCSHCKG L + +YSSM+GVLYC+ 
Sbjct: 1   MSFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCKT 60

Query: 61  HFNQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HF QLFKETG+FSK F    +S DK   EL R+PSK  S FSGTQ+KCA C KT YPLEK
Sbjct: 61  HFEQLFKETGSFSKKFAPGCRSTDK---ELARAPSKICSAFSGTQDKCAACQKTVYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSA 178
           +T+E ++YHKSCFKCSHGGC L+ S+YAAL+G+LYCK HF QLF EKGSYNH+ K +
Sbjct: 121 LTLEGESYHKSCFKCSHGGCILTTSSYAALNGVLYCKIHFGQLFMEKGSYNHMKKKS 174

[Close]

BLAST of Lag0040878 vs. ExPASy Swiss-Prot
Match: Q1ECF5 (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 6.3e-68
Identity = 113/184 (61.41%), Postives = 151/184 (82.07%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCKGTLKLSNYSSMEGVLYCQP 60
           MSF GT  KC  C+KTVY VD LS +G+ +HKSCF+C+HCKGTL++SNYSSM+GVLYC+ 
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFNQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HF QLFKE+GNFSKNF  P K+     PELTR+PSK +S+F GTQ+KCA C KT YPLEK
Sbjct: 61  HFEQLFKESGNFSKNF-QPGKT---EKPELTRTPSKISSIFCGTQDKCAACEKTVYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           + +E + +HK+CF+C+HGGC+L+ S+YA+LD +LYC+HHF+QLF EKG+Y H++++A+ +
Sbjct: 121 IQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHR 180

Query: 181 RQAA 185
           R A+
Sbjct: 181 RTAS 180

[Close]

BLAST of Lag0040878 vs. ExPASy TrEMBL
Match: A0A6J1KBB9 (LIM domain-containing protein WLIM2a-like OS=Cucurbita maxima OX=3661 GN=LOC111491761 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 3.5e-106
Identity = 189/195 (96.92%), Postives = 191/195 (97.95%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCKGTLKLSNYSSMEGVLYCQP 60
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHK CFKCSHCKGTLKLSNYSSMEGVLYC+P
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFNQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HF QLFKETGNFSKNFLSPAKSADKPTPEL RSPSKAA MFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELNRSPSKAARMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQAATSDPDASKVEL 196
           RQAATSDP+ASKVEL
Sbjct: 181 RQAATSDPNASKVEL 195

[Close]

BLAST of Lag0040878 vs. ExPASy TrEMBL
Match: A0A6J1DT64 (LIM domain-containing protein WLIM2b-like OS=Momordica charantia OX=3673 GN=LOC111023731 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 4.6e-106
Identity = 189/195 (96.92%), Postives = 190/195 (97.44%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCKGTLKLSNYSSMEGVLYCQP 60
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCKGTLKLSNYSSMEGVLYC+P
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFNQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HF QLFKETGNFSKNFLSPAKS DKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSTDKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQAATSDPDASKVEL 196
           RQAATS PDA  VEL
Sbjct: 181 RQAATSVPDAENVEL 195

[Close]

BLAST of Lag0040878 vs. ExPASy TrEMBL
Match: A0A0A0KQF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G198170 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.0e-105
Identity = 186/194 (95.88%), Postives = 192/194 (98.97%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCKGTLKLSNYSSMEGVLYCQP 60
           MSFIGTQQKCKAC+KTVYPVDQLSADGV+FHKSCFKCSHCKGTLKLSNYSSM+GVLYC+P
Sbjct: 1   MSFIGTQQKCKACDKTVYPVDQLSADGVSFHKSCFKCSHCKGTLKLSNYSSMDGVLYCKP 60

Query: 61  HFNQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HF QLFKETGNFSKNFLSPAKS++KPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQAATSDPDASKVE 195
           RQAATSDPD SKVE
Sbjct: 181 RQAATSDPDPSKVE 194

[Close]

BLAST of Lag0040878 vs. ExPASy TrEMBL
Match: A0A6J1GYT7 (LIM domain-containing protein WLIM2b OS=Cucurbita moschata OX=3662 GN=LOC111458736 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 4.3e-104
Identity = 185/195 (94.87%), Postives = 188/195 (96.41%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCKGTLKLSNYSSMEGVLYCQP 60
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHC GTLKLSNYSSMEGVLYC+P
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFNQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HF QLFKE GNFSKNFLS AKS++KPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSA MK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180

Query: 181 RQAATSDPDASKVEL 196
           RQ ATSDPD SKVEL
Sbjct: 181 RQVATSDPDTSKVEL 195

[Close]

BLAST of Lag0040878 vs. ExPASy TrEMBL
Match: A0A1S3CIM8 (LIM domain-containing protein WLIM2b-like OS=Cucumis melo OX=3656 GN=LOC103501413 PE=4 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 5.6e-104
Identity = 183/194 (94.33%), Postives = 191/194 (98.45%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCKGTLKLSNYSSMEGVLYCQP 60
           MSFIGTQQKCKAC+KTVYPVDQLSADGV+FHKSCFKCSHCKGTLKLSNYSSM+GVLYC+P
Sbjct: 1   MSFIGTQQKCKACDKTVYPVDQLSADGVSFHKSCFKCSHCKGTLKLSNYSSMDGVLYCKP 60

Query: 61  HFNQLFKETGNFSKNFLSPAKSADKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HF QLFKETGNFSKNFLSPAKS++KPTPELTRSPS+AASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSSEKPTPELTRSPSRAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAAL+GILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQAATSDPDASKVE 195
           RQAATSD D SKVE
Sbjct: 181 RQAATSDSDPSKVE 194

The following BLAST results are available for this feature:

BLAST of Lag0040878 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023549082.1	5.6e-106	96.92	LIM domain-containing protein WLIM2b-like [Cucurbita pepo subsp. pepo] >XP_02354...	[more]
XP_022996549.1	7.3e-106	96.92	LIM domain-containing protein WLIM2a-like [Cucurbita maxima] >XP_022996558.1 LIM...	[more]
XP_022156896.1	9.5e-106	96.92	LIM domain-containing protein WLIM2b-like [Momordica charantia] >XP_022156897.1 ...	[more]
XP_004150238.1	2.1e-105	95.88	LIM domain-containing protein WLIM2b [Cucumis sativus] >XP_031741833.1 LIM domai...	[more]
XP_038891809.1	3.6e-105	96.39	LIM domain-containing protein WLIM2b-like [Benincasa hispida] >XP_038891810.1 LI...	[more]

BLAST of Lag0040878 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M047	6.4e-89	81.18	LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P...	[more]
O04193	9.3e-88	77.32	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]
O80839	5.1e-70	63.98	LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A P...	[more]
Q7F9R9	2.8e-68	66.67	LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q1ECF5	6.3e-68	61.41	LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B P...	[more]

BLAST of Lag0040878 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KBB9	3.5e-106	96.92	LIM domain-containing protein WLIM2a-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1DT64	4.6e-106	96.92	LIM domain-containing protein WLIM2b-like OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A0A0KQF5	1.0e-105	95.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G198170 PE=4 SV=1	[more]
A0A6J1GYT7	4.3e-104	94.87	LIM domain-containing protein WLIM2b OS=Cucurbita moschata OX=3662 GN=LOC1114587...	[more]
A0A1S3CIM8	5.6e-104	94.33	LIM domain-containing protein WLIM2b-like OS=Cucumis melo OX=3656 GN=LOC10350141...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 9..61 e-value: 9.8E-13 score: 58.3 coord: 107..159 e-value: 4.7E-12 score: 56.0
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 10..65 e-value: 1.3E-11 score: 44.5 coord: 108..163 e-value: 1.4E-10 score: 41.3
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 10..44
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 106..166 score: 12.5434
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 8..68 score: 13.3651
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 102..172 e-value: 1.1E-19 score: 72.3 coord: 4..74 e-value: 1.7E-20 score: 75.0
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 1..186
None	No IPR available	PANTHER	PTHR24206:SF94	LIM DOMAIN-CONTAINING PROTEIN WLIM2B	coord: 1..186
None	No IPR available	CDD	cd09441	LIM2_SF3	coord: 108..168 e-value: 6.55386E-36 score: 118.342
None	No IPR available	CDD	cd09440	LIM1_SF3	coord: 6..68 e-value: 2.23048E-40 score: 129.892
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 3..35
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 100..133
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 36..76
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 134..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040878.1	Lag0040878.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051017	actin filament bundle assembly
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0046872	metal ion binding