Lag0040874 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040874
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	60S ribosomal protein L35a-1
Location	chr13: 9198679 .. 9199409 (+)
RNA-Seq Expression	Lag0040874
Synteny	Lag0040874

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAAGGAAGCCAAGGAGAGAGAGTCAGGTCTGTAATCCAATCCTACGCAATATCAATCTTCCAAGTCCTCTTTCTATGATTATTACACTGAAATTGTTTCATTGTTCTTTCGTTTCTGTTTCTTATTGGATTCAGACTCTACGTCAGGGGAACAATTCTCGGCTACAAGAGGTAATCAAGCATTACTGTCTACCAGCTCTCATTTATGTTTTCTTGCATTCTGTAAAATTCGAAGTAACGTTTGTGTTGTTTATATTCCGAGAATGTATTGGAAAATTGAAAGTAGATCATATTCTTACTAGCCAAGTGTTTGGGATTAGTTTGCCATTTTTTCGAAATCTAAAGATGATTGGTATTGGTGGTTAGGTCGAAGTCGAACCAGTACCCAAACACTTCTTTACTCCAGATCGAGGGTGTTAATTCTAAGGATGAGGTTTCCTGGTACCAAGGAAAGCGATTGGCATATATCTACAGGGCTAAAGTGAAGAAGAACGGTACTCATTATCGTTGCATTTGGGGCAAGGTCGCTAGGCCTCATGGTAACAGTGGCGTCGTTAGAGCAAAGTTCAAGTCTAACCTGCCACCAAAGTCCATGGTATAGACTTATTGTTAAAAATAACACTATTCGAAGTGTTTGAGGCCTCTCTCTGTCTTGGTTTTAACAAGTTTTGAACTTCCCTGCAGGGTGACAGAGTCAGAGTATTCATGTACCCCAGCAACATTTGA

mRNA sequence

ATGGTGAAAGGAAGCCAAGGAGAGAGAGTCAGACTCTACGTCAGGGGAACAATTCTCGGCTACAAGAGGTCGAAGTCGAACCAGTACCCAAACACTTCTTTACTCCAGATCGAGGGTGTTAATTCTAAGGATGAGGTTTCCTGGTACCAAGGAAAGCGATTGGCATATATCTACAGGGCTAAAGTGAAGAAGAACGGTACTCATTATCGTTGCATTTGGGGCAAGGTCGCTAGGCCTCATGGTAACAGTGGCGTCGTTAGAGCAAAGTTCAAGTCTAACCTGCCACCAAAGTCCATGGGTGACAGAGTCAGAGTATTCATGTACCCCAGCAACATTTGA

Coding sequence (CDS)

ATGGTGAAAGGAAGCCAAGGAGAGAGAGTCAGACTCTACGTCAGGGGAACAATTCTCGGCTACAAGAGGTCGAAGTCGAACCAGTACCCAAACACTTCTTTACTCCAGATCGAGGGTGTTAATTCTAAGGATGAGGTTTCCTGGTACCAAGGAAAGCGATTGGCATATATCTACAGGGCTAAAGTGAAGAAGAACGGTACTCATTATCGTTGCATTTGGGGCAAGGTCGCTAGGCCTCATGGTAACAGTGGCGTCGTTAGAGCAAAGTTCAAGTCTAACCTGCCACCAAAGTCCATGGGTGACAGAGTCAGAGTATTCATGTACCCCAGCAACATTTGA

Protein sequence

MVKGSQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYRAKVKKNGTHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI

Homology

[Close]

BLAST of Lag0040874 vs. NCBI nr
Match: XP_022957040.1 (60S ribosomal protein L35a-1 [Cucurbita moschata] >XP_022978196.1 60S ribosomal protein L35a-1-like [Cucurbita maxima] >XP_023529930.1 60S ribosomal protein L35a-1 [Cucurbita pepo subsp. pepo] >KAG7031585.1 60S ribosomal protein L35a-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 228.8 bits (582), Expect = 2.3e-56
Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MVKGSQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYRA 60
           MVKGSQGERVRLY RGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIY+A
Sbjct: 1   MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA 60

Query: 61  KVKKNGTHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 113
           KVKKNG+HYRCIWGKVARPHGNSG+VRAKFKSNLPPKSMGDRVRVFMYPSNI
Sbjct: 61  KVKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 112

[Close]

BLAST of Lag0040874 vs. NCBI nr
Match: XP_022156899.1 (60S ribosomal protein L35a-1 [Momordica charantia])

HSP 1 Score: 228.4 bits (581), Expect = 3.0e-56
Identity = 107/112 (95.54%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MVKGSQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYRA 60
           MVKG +GERVRLY+RGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIY+A
Sbjct: 1   MVKGREGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA 60

Query: 61  KVKKNGTHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 113
           KVKKNGTHYRCIWGKVARPHGNSG+VRAKFKSNLPPKSMGDRVRVFMYPSNI
Sbjct: 61  KVKKNGTHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 112

[Close]

BLAST of Lag0040874 vs. NCBI nr
Match: XP_022139205.1 (60S ribosomal protein L35a-1-like [Momordica charantia])

HSP 1 Score: 228.0 bits (580), Expect = 4.0e-56
Identity = 106/112 (94.64%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MVKGSQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYRA 60
           MVKG +GERVRLY+RGT+LGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIY+A
Sbjct: 1   MVKGREGERVRLYIRGTVLGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA 60

Query: 61  KVKKNGTHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 113
           KVKKNGTHYRCIWGKVARPHGNSG+VRAKFKSNLPPKSMGDRVRVFMYPSNI
Sbjct: 61  KVKKNGTHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 112

[Close]

BLAST of Lag0040874 vs. NCBI nr
Match: XP_008463199.1 (PREDICTED: 60S ribosomal protein L35a-1 [Cucumis melo] >XP_011654980.1 60S ribosomal protein L35a-1 [Cucumis sativus] >KAA0037334.1 Ribosomal protein L35A [Cucumis melo var. makuwa] >KGN50623.1 hypothetical protein Csa_021400 [Cucumis sativus] >TYJ97573.1 Ribosomal protein L35A [Cucumis melo var. makuwa])

HSP 1 Score: 226.9 bits (577), Expect = 8.8e-56
Identity = 107/112 (95.54%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MVKGSQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYRA 60
           MVKG QGERVRLY RGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIY+A
Sbjct: 1   MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA 60

Query: 61  KVKKNGTHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 113
           KVKKNG+HYRCIWGKVARPHGNSG+VRAKFKSNLPPKSMGDRVRVFMYPSNI
Sbjct: 61  KVKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 112

[Close]

BLAST of Lag0040874 vs. NCBI nr
Match: XP_022156649.1 (60S ribosomal protein L35a-1-like [Momordica charantia])

HSP 1 Score: 225.3 bits (573), Expect = 2.6e-55
Identity = 106/112 (94.64%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MVKGSQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYRA 60
           MVKG +GERVRLY+RGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIY+A
Sbjct: 1   MVKGREGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA 60

Query: 61  KVKKNGTHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 113
           KVKKNGTHYRCIWGKVARPHGNSG+VRAKFKSNL PKSMGDRVRVFMYPSNI
Sbjct: 61  KVKKNGTHYRCIWGKVARPHGNSGIVRAKFKSNLSPKSMGDRVRVFMYPSNI 112

[Close]

BLAST of Lag0040874 vs. ExPASy Swiss-Prot
Match: Q9LMK0 (60S ribosomal protein L35a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL35AA PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 3.0e-54
Identity = 98/112 (87.50%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MVKGSQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYRA 60
           MVKG QGERVRLYVRGTILGYKRSKSNQYPNTSL+Q+EGVN+ +EVSWY+GKR+AYIY+A
Sbjct: 1   MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKA 60

Query: 61  KVKKNGTHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 113
           K KKNG+HYRCIWGKV RPHGNSGVVRAKF SNLPPKSMG RVRVFMYPSNI
Sbjct: 61  KTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112

[Close]

BLAST of Lag0040874 vs. ExPASy Swiss-Prot
Match: Q9C912 (60S ribosomal protein L35a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL35AC PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 3.0e-54
Identity = 98/112 (87.50%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MVKGSQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYRA 60
           MVKG QGERVRLYVRGTILGYKRSKSNQYPNTSL+QIEGVN+++EV+WY+GKR+AYIY+A
Sbjct: 1   MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKA 60

Query: 61  KVKKNGTHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 113
           K KKNG+HYRCIWGKV RPHGNSGVVRAKF SNLPPKSMG RVRVFMYPSNI
Sbjct: 61  KTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112

[Close]

BLAST of Lag0040874 vs. ExPASy Swiss-Prot
Match: Q9FZH0 (60S ribosomal protein L35a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35AB PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 5.6e-53
Identity = 95/111 (85.59%), Postives = 106/111 (95.50%), Query Frame = 0


Query: 2   VKGSQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYRAK 61
           +KG QGERVRLYVRGT+LGYKRSKSNQYPNTSL+QIEGVN+++EV+WY+GKRLAYIY+AK
Sbjct: 1   MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAK 60

Query: 62  VKKNGTHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 113
            KKNG+HYRCIWGKV RPHGNSGVVR+KF SNLPPKSMG RVRVFMYPSNI
Sbjct: 61  TKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111

[Close]

BLAST of Lag0040874 vs. ExPASy Swiss-Prot
Match: P51422 (60S ribosomal protein L35a-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35AD PE=3 SV=2)

HSP 1 Score: 207.6 bits (527), Expect = 7.3e-53
Identity = 95/111 (85.59%), Postives = 106/111 (95.50%), Query Frame = 0


Query: 2   VKGSQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYRAK 61
           +KG QGERVRLYVRGT+LGYKRSKSNQYPNTSL+QIEGVN+++EV+WY+GKRLAYIY+AK
Sbjct: 1   MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAK 60

Query: 62  VKKNGTHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 113
            KKNG+HYRCIWGKV RPHGNSGVVR+KF SNLPPKSMG RVRVFMYPSNI
Sbjct: 61  TKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111

[Close]

BLAST of Lag0040874 vs. ExPASy Swiss-Prot
Match: P41056 (60S ribosomal protein L33-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL33B PE=1 SV=2)

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-27
Identity = 59/105 (56.19%), Postives = 75/105 (71.43%), Query Frame = 0


Query: 8   ERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYRAKVKKNGT 67
           E  RLYV+G  L Y+RSK    PN SL++IEGV +  E  +Y GKR+AY+YRA  +  G+
Sbjct: 3   ESHRLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQEAQFYLGKRIAYVYRASKEVRGS 62

Query: 68  HYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 113
             R +WGKV R HGNSGVVRA F++NLP K+ G  VR+F+YPSNI
Sbjct: 63  KIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107

The following BLAST results are available for this feature:

BLAST of Lag0040874 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022957040.1	2.3e-56	96.43	60S ribosomal protein L35a-1 [Cucurbita moschata] >XP_022978196.1 60S ribosomal ...	[more]
XP_022156899.1	3.0e-56	95.54	60S ribosomal protein L35a-1 [Momordica charantia]	[more]
XP_022139205.1	4.0e-56	94.64	60S ribosomal protein L35a-1-like [Momordica charantia]	[more]
XP_008463199.1	8.8e-56	95.54	PREDICTED: 60S ribosomal protein L35a-1 [Cucumis melo] >XP_011654980.1 60S ribos...	[more]
XP_022156649.1	2.6e-55	94.64	60S ribosomal protein L35a-1-like [Momordica charantia]	[more]

BLAST of Lag0040874 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LMK0	3.0e-54	87.50	60S ribosomal protein L35a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL35AA PE=3 SV=...	[more]
Q9C912	3.0e-54	87.50	60S ribosomal protein L35a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL35AC PE=3 SV=...	[more]
Q9FZH0	5.6e-53	85.59	60S ribosomal protein L35a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35AB PE=3 SV=...	[more]
P51422	7.3e-53	85.59	60S ribosomal protein L35a-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35AD PE=3 SV=...	[more]
P41056	1.1e-27	56.19	60S ribosomal protein L33-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038661	Ribosomal protein L35A superfamily	GENE3D	2.40.10.190	translation elongation factor selb, chain A, domain 4	coord: 6..112 e-value: 3.0E-51 score: 173.9
IPR001780	Ribosomal protein L35A	PFAM	PF01247	Ribosomal_L35Ae	coord: 12..106 e-value: 6.8E-44 score: 148.0
IPR001780	Ribosomal protein L35A	PANTHER	PTHR10902	60S RIBOSOMAL PROTEIN L35A	coord: 1..112
IPR001780	Ribosomal protein L35A	HAMAP	MF_00573	Ribosomal_L35Ae	coord: 14..106 score: 25.40062
None	No IPR available	PANTHER	PTHR10902:SF20	60S RIBOSOMAL PROTEIN L35A-1	coord: 1..112
IPR018266	Ribosomal protein L35Ae, conserved site	PROSITE	PS01105	RIBOSOMAL_L35AE	coord: 74..95
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 12..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040874.1	Lag0040874.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0042273	ribosomal large subunit biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome