Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATCAAATCCACAGCAACAACCGAACTCCGATTTCCACCAAATTTTACTCTGTCATCAAAACCCATGTCACTGATTCGGAGGATGACCGGCGGGCGGCGGCGGAGCAGCGTCTACGATCCCTTCTCATTGGACAATTGGGATCCATTCGAACCCGCCTCTGGTTTCATGGACACTCGAATCGACTGGAAAGAGACTCCAAATTCTCACATCTTCAAGGCTGATCTTCCCGGAATCAAAAAGGAAGAAGTGAGAGTTGAAGTCGAAGAGGGCAGAATTCTGCAGATCAGTGGGGAGAGAAGCAAAGAGCAGGAGGAGGAGACCGATGAGTGGCACAGAATCGAGCGGAGCAGTGGGAAGTTCTTGAGGAGATTCAGATTGCCGGAGAATGTGAAAGTGGCCGACGAGATTAATGCGAGGATGGAGGATGGAATTTTGACTGTGACAGTGGTGAAGATGGAAGAGAAGAAGCCTCAAATTAAGTCCATTGCGATCTCTGGTTAG
mRNA sequence
ATGAAAATCAAATCCACAGCAACAACCGAACTCCGATTTCCACCAAATTTTACTCTGTCATCAAAACCCATGTCACTGATTCGGAGGATGACCGGCGGGCGGCGGCGGAGCAGCGTCTACGATCCCTTCTCATTGGACAATTGGGATCCATTCGAACCCGCCTCTGGTTTCATGGACACTCGAATCGACTGGAAAGAGACTCCAAATTCTCACATCTTCAAGGCTGATCTTCCCGGAATCAAAAAGGAAGAAGTGAGAGTTGAAGTCGAAGAGGGCAGAATTCTGCAGATCAGTGGGGAGAGAAGCAAAGAGCAGGAGGAGGAGACCGATGAGTGGCACAGAATCGAGCGGAGCAGTGGGAAGTTCTTGAGGAGATTCAGATTGCCGGAGAATGTGAAAGTGGCCGACGAGATTAATGCGAGGATGGAGGATGGAATTTTGACTGTGACAGTGGTGAAGATGGAAGAGAAGAAGCCTCAAATTAAGTCCATTGCGATCTCTGGTTAG
Coding sequence (CDS)
ATGAAAATCAAATCCACAGCAACAACCGAACTCCGATTTCCACCAAATTTTACTCTGTCATCAAAACCCATGTCACTGATTCGGAGGATGACCGGCGGGCGGCGGCGGAGCAGCGTCTACGATCCCTTCTCATTGGACAATTGGGATCCATTCGAACCCGCCTCTGGTTTCATGGACACTCGAATCGACTGGAAAGAGACTCCAAATTCTCACATCTTCAAGGCTGATCTTCCCGGAATCAAAAAGGAAGAAGTGAGAGTTGAAGTCGAAGAGGGCAGAATTCTGCAGATCAGTGGGGAGAGAAGCAAAGAGCAGGAGGAGGAGACCGATGAGTGGCACAGAATCGAGCGGAGCAGTGGGAAGTTCTTGAGGAGATTCAGATTGCCGGAGAATGTGAAAGTGGCCGACGAGATTAATGCGAGGATGGAGGATGGAATTTTGACTGTGACAGTGGTGAAGATGGAAGAGAAGAAGCCTCAAATTAAGTCCATTGCGATCTCTGGTTAG
Protein sequence
MKIKSTATTELRFPPNFTLSSKPMSLIRRMTGGRRRSSVYDPFSLDNWDPFEPASGFMDTRIDWKETPNSHIFKADLPGIKKEEVRVEVEEGRILQISGERSKEQEEETDEWHRIERSSGKFLRRFRLPENVKVADEINARMEDGILTVTVVKMEEKKPQIKSIAISG
Homology
BLAST of Lag0040857 vs. NCBI nr
Match:
XP_038892902.1 (17.8 kDa class I heat shock protein-like [Benincasa hispida])
HSP 1 Score: 217.2 bits (552), Expect = 1.1e-52
Identity = 109/147 (74.15%), Postives = 132/147 (89.80%), Query Frame = 0
Query: 24 MSLIRRMTGGRRRSSV-YDPFSLDNWDPF-EPASGFMDTRIDWKETPNSHIFKADLPGIK 83
MSLIRRMTGGRRRS+V YDPFSL++W+P+ E S FMDTRIDWKETPN+HIFKADLPG+K
Sbjct: 1 MSLIRRMTGGRRRSNVYYDPFSLEDWNPYEETGSAFMDTRIDWKETPNAHIFKADLPGMK 60
Query: 84 KEEVRVEVEEGRILQISGERSKEQEEETDEWHRIERSSGKFLRRFRLPENVKVADEINAR 143
K EV++EV+EGRIL++SGER KE EEE+++W+R+ER SGKFLRRFRLPENVKV D +N
Sbjct: 61 KGEVKMEVKEGRILELSGERRKEAEEESEKWYRVERRSGKFLRRFRLPENVKVED-VNTS 120
Query: 144 MEDGILTVTVVKMEEKKPQIKSIAISG 169
MEDG+LTVT+ K+E+ KP+IKSIAISG
Sbjct: 121 MEDGVLTVTLPKIEDMKPEIKSIAISG 146
BLAST of Lag0040857 vs. NCBI nr
Match:
XP_008463198.1 (PREDICTED: 18.1 kDa class I heat shock protein-like [Cucumis melo] >KAA0037330.1 18.1 kDa class I heat shock protein-like [Cucumis melo var. makuwa] >TYJ97577.1 18.1 kDa class I heat shock protein-like [Cucumis melo var. makuwa])
HSP 1 Score: 209.5 bits (532), Expect = 2.2e-50
Identity = 111/161 (68.94%), Postives = 128/161 (79.50%), Query Frame = 0
Query: 24 MSLIRRMTGGRRRSSVYDPFSLDNWDPFE----------------PASGFMDTRIDWKET 83
M+LI + GG RRS+V+DPFSLD WDPFE S F +TRIDWKET
Sbjct: 1 MALIPSIFGG-RRSNVFDPFSLDIWDPFEGFSFSNSLANLPSSARETSAFANTRIDWKET 60
Query: 84 PNSHIFKADLPGIKKEEVRVEVEEGRILQISGERSKEQEEETDEWHRIERSSGKFLRRFR 143
P +HIFKADLPGIKKEEV+VEVEEGR+LQISGERSKEQEE+ D+WHRIERSSGKF+RRFR
Sbjct: 61 PQAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNDKWHRIERSSGKFMRRFR 120
Query: 144 LPENVKVADEINARMEDGILTVTVVKMEEKKPQIKSIAISG 169
LPEN KV +E+ A ME+G+LTVTV KMEEKKP+IKSI I+G
Sbjct: 121 LPENAKV-EEVKANMENGVLTVTVPKMEEKKPEIKSIDIAG 159
BLAST of Lag0040857 vs. NCBI nr
Match:
XP_038892901.1 (18.1 kDa class I heat shock protein-like [Benincasa hispida])
HSP 1 Score: 209.1 bits (531), Expect = 2.9e-50
Identity = 110/161 (68.32%), Postives = 128/161 (79.50%), Query Frame = 0
Query: 24 MSLIRRMTGGRRRSSVYDPFSLDNWDPFE----------------PASGFMDTRIDWKET 83
M+LI + GG RRS+V+DPFSLD WDPFE S F +TRIDWKET
Sbjct: 1 MALIPSIFGG-RRSNVFDPFSLDIWDPFEGFPFSSSLANIPSSARETSAFANTRIDWKET 60
Query: 84 PNSHIFKADLPGIKKEEVRVEVEEGRILQISGERSKEQEEETDEWHRIERSSGKFLRRFR 143
P +HIFKADLPGIKKEEV+VEVEEGR+LQISGERSKEQEE+ D+WHR+ERSSGKF+RRFR
Sbjct: 61 PEAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNDKWHRVERSSGKFMRRFR 120
Query: 144 LPENVKVADEINARMEDGILTVTVVKMEEKKPQIKSIAISG 169
LPEN KV +E+ A ME+G+LTVTV KMEEKKP+IK+I ISG
Sbjct: 121 LPENAKV-EEVKANMENGVLTVTVPKMEEKKPEIKTIDISG 159
BLAST of Lag0040857 vs. NCBI nr
Match:
XP_008465538.1 (PREDICTED: 17.6 kDa class I heat shock protein 3-like [Cucumis melo] >KAA0051493.1 17.6 kDa class I heat shock protein 3-like [Cucumis melo var. makuwa] >TYK22768.1 17.6 kDa class I heat shock protein 3-like [Cucumis melo var. makuwa])
HSP 1 Score: 208.8 bits (530), Expect = 3.7e-50
Identity = 111/161 (68.94%), Postives = 127/161 (78.88%), Query Frame = 0
Query: 24 MSLIRRMTGGRRRSSVYDPFSLDNWDPFE----------------PASGFMDTRIDWKET 83
MSLI + GG RRS+V+DPFSLD WDPFE S F +TRIDWKET
Sbjct: 1 MSLIPSIFGG-RRSNVFDPFSLDIWDPFEGFPFSNSLANVPSSAVETSAFANTRIDWKET 60
Query: 84 PNSHIFKADLPGIKKEEVRVEVEEGRILQISGERSKEQEEETDEWHRIERSSGKFLRRFR 143
P +HIFKADLPGIKKEEV+VEVEEGR+LQISGERSKEQEE+ D+WHR+ERSSGKF RRFR
Sbjct: 61 PQAHIFKADLPGIKKEEVKVEVEEGRVLQISGERSKEQEEKNDKWHRVERSSGKFTRRFR 120
Query: 144 LPENVKVADEINARMEDGILTVTVVKMEEKKPQIKSIAISG 169
LPEN KV +E+ A ME+G+LTVTV K+EEKKP+IKSI ISG
Sbjct: 121 LPENAKV-EEVKANMENGVLTVTVPKVEEKKPEIKSIDISG 159
BLAST of Lag0040857 vs. NCBI nr
Match:
XP_022138993.1 (17.3 kDa class I heat shock protein-like [Momordica charantia])
HSP 1 Score: 208.4 bits (529), Expect = 4.9e-50
Identity = 110/163 (67.48%), Postives = 127/163 (77.91%), Query Frame = 0
Query: 24 MSLIRRMTGGRRRSSVYDPFSLDNWDPFE------------------PASGFMDTRIDWK 83
MSLI + GG RRS+++DPFSLD WDPFE S F TRIDWK
Sbjct: 1 MSLIPSIFGG-RRSNIFDPFSLDVWDPFEGFPFPNSTALANAHSSASETSAFASTRIDWK 60
Query: 84 ETPNSHIFKADLPGIKKEEVRVEVEEGRILQISGERSKEQEEETDEWHRIERSSGKFLRR 143
ETP +H+FKADLPGIKKEEV+VEVEEGR+LQISGERS+EQEE+ D+WHRIERSSGKF+RR
Sbjct: 61 ETPEAHVFKADLPGIKKEEVKVEVEEGRVLQISGERSREQEEKNDKWHRIERSSGKFMRR 120
Query: 144 FRLPENVKVADEINARMEDGILTVTVVKMEEKKPQIKSIAISG 169
FRLPEN KV +E+ A ME+G+LTVTV KMEEKKP+IKSI ISG
Sbjct: 121 FRLPENAKV-EEVKASMENGVLTVTVPKMEEKKPEIKSIDISG 161
BLAST of Lag0040857 vs. ExPASy Swiss-Prot
Match:
P27396 (17.8 kDa class I heat shock protein OS=Daucus carota OX=4039 PE=3 SV=1)
HSP 1 Score: 193.4 bits (490), Expect = 2.1e-48
Identity = 98/159 (61.64%), Postives = 125/159 (78.62%), Query Frame = 0
Query: 24 MSLIRRMTGGRRRSSVYDPFSLDNWDPF--------------EPASGFMDTRIDWKETPN 83
MS+I GG RRS+V+DPFSLD WDPF + + F++T IDWKETP
Sbjct: 1 MSIIPSFFGG-RRSNVFDPFSLDVWDPFKDFPLVTSSASEFGKETAAFVNTHIDWKETPQ 60
Query: 84 SHIFKADLPGIKKEEVRVEVEEGRILQISGERSKEQEEETDEWHRIERSSGKFLRRFRLP 143
+H+FKADLPG+KKEEV+VE+EEG++LQISGER+KE+EE+ D+WHR+ERSSGKFLRRFRLP
Sbjct: 61 AHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLP 120
Query: 144 ENVKVADEINARMEDGILTVTVVKMEEKKPQIKSIAISG 169
EN KV DE+ A M +G++TVTV K+E KKP++K+I ISG
Sbjct: 121 ENAKV-DEVKAAMANGVVTVTVPKVEIKKPEVKAIDISG 157
BLAST of Lag0040857 vs. ExPASy Swiss-Prot
Match:
P30221 (17.8 kDa class I heat shock protein OS=Solanum lycopersicum OX=4081 PE=2 SV=1)
HSP 1 Score: 191.4 bits (485), Expect = 8.1e-48
Identity = 97/155 (62.58%), Postives = 122/155 (78.71%), Query Frame = 0
Query: 24 MSLIRRMTGGRRRSSVYDPFSLDNWDPFE----------PASGFMDTRIDWKETPNSHIF 83
MSLI R+ G RR SS++DPFS+D +DPF +S F +TRIDWKETP H+F
Sbjct: 1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPSTNSGESSAFANTRIDWKETPEPHVF 60
Query: 84 KADLPGIKKEEVRVEVEEGRILQISGERSKEQEEETDEWHRIERSSGKFLRRFRLPENVK 143
K DLPG+KKEEV+VEVEE R+LQISGER+ E+E++ D+WHR+ERSSGKF+RRFRLPEN K
Sbjct: 61 KVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAK 120
Query: 144 VADEINARMEDGILTVTVVKMEEKKPQIKSIAISG 169
+ D++ A ME+G+LTVTV K E KKP++KSI ISG
Sbjct: 121 M-DQVKASMENGVLTVTVPKEEVKKPEVKSIEISG 154
BLAST of Lag0040857 vs. ExPASy Swiss-Prot
Match:
P27880 (18.2 kDa class I heat shock protein OS=Medicago sativa OX=3879 GN=HSP18.2 PE=2 SV=1)
HSP 1 Score: 189.9 bits (481), Expect = 2.4e-47
Identity = 97/160 (60.62%), Postives = 123/160 (76.88%), Query Frame = 0
Query: 24 MSLIRRMTGGRRRSSVYDPFSLDNWDPFE---------------PASGFMDTRIDWKETP 83
MSLI GG RRS+V+DPFSLD WDPF+ S F+ TR+DWKETP
Sbjct: 1 MSLIPSFFGG-RRSNVFDPFSLDVWDPFKDFPFNNSALSASFPRENSAFVSTRVDWKETP 60
Query: 84 NSHIFKADLPGIKKEEVRVEVEEGRILQISGERSKEQEEETDEWHRIERSSGKFLRRFRL 143
+H+FKADLPG+KKEEV+VE+E+ R+LQISGERS E+E++ D+WHR+ERSSGKF+RRFRL
Sbjct: 61 EAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRL 120
Query: 144 PENVKVADEINARMEDGILTVTVVKMEEKKPQIKSIAISG 169
PEN K+ D++ A ME+G+LTVTV K E KKP++K+I ISG
Sbjct: 121 PENAKM-DQVKAAMENGVLTVTVPKEEVKKPEVKTIDISG 158
BLAST of Lag0040857 vs. ExPASy Swiss-Prot
Match:
O82012 (17.6 kDa class I heat shock protein OS=Solanum peruvianum OX=4082 PE=2 SV=1)
HSP 1 Score: 189.1 bits (479), Expect = 4.0e-47
Identity = 96/155 (61.94%), Postives = 120/155 (77.42%), Query Frame = 0
Query: 24 MSLIRRMTGGRRRSSVYDPFSLDNWDPFE----------PASGFMDTRIDWKETPNSHIF 83
MSLI R+ G RR +SV+DPFS+D +DPF+ S F +TRIDWKETP +H+F
Sbjct: 1 MSLIPRIFGDRRSTSVFDPFSIDVFDPFKELGFTVSNSGETSAFANTRIDWKETPEAHVF 60
Query: 84 KADLPGIKKEEVRVEVEEGRILQISGERSKEQEEETDEWHRIERSSGKFLRRFRLPENVK 143
KADLPG+KKEEV+VEVEE R+LQISGER+ E+E++ D WHR+ERSSGKF+RRFRLPEN K
Sbjct: 61 KADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAK 120
Query: 144 VADEINARMEDGILTVTVVKMEEKKPQIKSIAISG 169
+ D++ A ME+G+LTVTV K E P +KSI ISG
Sbjct: 121 M-DQVKASMENGVLTVTVPKEEVNNPDVKSIEISG 154
BLAST of Lag0040857 vs. ExPASy Swiss-Prot
Match:
P19036 (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana OX=3702 GN=HSP17.4A PE=1 SV=2)
HSP 1 Score: 188.7 bits (478), Expect = 5.2e-47
Identity = 95/158 (60.13%), Postives = 124/158 (78.48%), Query Frame = 0
Query: 24 MSLIRRMTGGRRRSSVYDPFSLDNWDPFE----------PA---SGFMDTRIDWKETPNS 83
MSL+ GG RR++V+DPFSLD WDPFE PA + F + ++DW+ETP +
Sbjct: 1 MSLVPSFFGG-RRTNVFDPFSLDVWDPFEGFLTPGLTNAPAKDVAAFTNAKVDWRETPEA 60
Query: 84 HIFKADLPGIKKEEVRVEVEEGRILQISGERSKEQEEETDEWHRIERSSGKFLRRFRLPE 143
H+FKAD+PG+KKEEV+VEVE+G ILQISGERS E EE++D WHR+ERSSGKF+RRFRLPE
Sbjct: 61 HVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPE 120
Query: 144 NVKVADEINARMEDGILTVTVVKMEEKKPQIKSIAISG 169
N KV +E+ A ME+G+L+VTV K++E KP++KS+ ISG
Sbjct: 121 NAKV-EEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038892902.1 | 1.1e-52 | 74.15 | 17.8 kDa class I heat shock protein-like [Benincasa hispida] | [more] |
XP_008463198.1 | 2.2e-50 | 68.94 | PREDICTED: 18.1 kDa class I heat shock protein-like [Cucumis melo] >KAA0037330.1... | [more] |
XP_038892901.1 | 2.9e-50 | 68.32 | 18.1 kDa class I heat shock protein-like [Benincasa hispida] | [more] |
XP_008465538.1 | 3.7e-50 | 68.94 | PREDICTED: 17.6 kDa class I heat shock protein 3-like [Cucumis melo] >KAA0051493... | [more] |
XP_022138993.1 | 4.9e-50 | 67.48 | 17.3 kDa class I heat shock protein-like [Momordica charantia] | [more] |
Match Name | E-value | Identity | Description | |
P27396 | 2.1e-48 | 61.64 | 17.8 kDa class I heat shock protein OS=Daucus carota OX=4039 PE=3 SV=1 | [more] |
P30221 | 8.1e-48 | 62.58 | 17.8 kDa class I heat shock protein OS=Solanum lycopersicum OX=4081 PE=2 SV=1 | [more] |
P27880 | 2.4e-47 | 60.63 | 18.2 kDa class I heat shock protein OS=Medicago sativa OX=3879 GN=HSP18.2 PE=2 S... | [more] |
O82012 | 4.0e-47 | 61.94 | 17.6 kDa class I heat shock protein OS=Solanum peruvianum OX=4082 PE=2 SV=1 | [more] |
P19036 | 5.2e-47 | 60.13 | 17.4 kDa class I heat shock protein OS=Arabidopsis thaliana OX=3702 GN=HSP17.4A ... | [more] |