Lag0040845 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0040845
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionThioredoxin
Locationchr13: 8935255 .. 8935802 (-)
RNA-Seq ExpressionLag0040845
SyntenyLag0040845
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGATATGGGGAAAGTGGTTTCATGCCACACTGTTGGCTCATGGAAGCAACAGCTCCTCAAAGCCAAACAATGCAACAAACTGGTACTCTTATCATCATTTGCTTCTAACTATTTTCCTCTCCTTTCTTAACAAAATCTTGGTTGCTAATTAAAACGATTGCGATATTTTGTCGATAGGTCGTTGTGAATTTTACCGCAACATGGTGTGGCCCGTGTCGTACCATGGCTCCTGTTCTTGATGATTTGGCAAAAAAGACGAGTAATGATGTTATATTCTTAAAAGTGGACGTCGATGAACTCATGGTAAGTTAATCCTATTGACTCATCCTGACTGTCACTAAGAATTAGAAATTAAGTAATTATTAAGAGACAGTCACATTGAAACCACTACGTTTAATTTTTTTTTTCTAGAGCGTTGCGGATGAGTTGGGAGTTGGAGCTCTTCCTTCGTTTCAATTCTTCAAGAATGGAAAACTGGTGGACAAGTTCGTCGGGGCAAGGAAAGATCTGCTGCACAATACTGTATCCAAATATGTTTCATGA

mRNA sequence

ATGGCAGATATGGGGAAAGTGGTTTCATGCCACACTGTTGGCTCATGGAAGCAACAGCTCCTCAAAGCCAAACAATGCAACAAACTGGTCGTTGTGAATTTTACCGCAACATGGTGTGGCCCGTGTCGTACCATGGCTCCTGTTCTTGATGATTTGGCAAAAAAGACGAGTAATGATGTTATATTCTTAAAAGTGGACGTCGATGAACTCATGAGCGTTGCGGATGAGTTGGGAGTTGGAGCTCTTCCTTCGTTTCAATTCTTCAAGAATGGAAAACTGGTGGACAAGTTCGTCGGGGCAAGGAAAGATCTGCTGCACAATACTGTATCCAAATATGTTTCATGA

Coding sequence (CDS)

ATGGCAGATATGGGGAAAGTGGTTTCATGCCACACTGTTGGCTCATGGAAGCAACAGCTCCTCAAAGCCAAACAATGCAACAAACTGGTCGTTGTGAATTTTACCGCAACATGGTGTGGCCCGTGTCGTACCATGGCTCCTGTTCTTGATGATTTGGCAAAAAAGACGAGTAATGATGTTATATTCTTAAAAGTGGACGTCGATGAACTCATGAGCGTTGCGGATGAGTTGGGAGTTGGAGCTCTTCCTTCGTTTCAATTCTTCAAGAATGGAAAACTGGTGGACAAGTTCGTCGGGGCAAGGAAAGATCTGCTGCACAATACTGTATCCAAATATGTTTCATGA

Protein sequence

MADMGKVVSCHTVGSWKQQLLKAKQCNKLVVVNFTATWCGPCRTMAPVLDDLAKKTSNDVIFLKVDVDELMSVADELGVGALPSFQFFKNGKLVDKFVGARKDLLHNTVSKYVS
Homology
BLAST of Lag0040845 vs. NCBI nr
Match: XP_038893273.1 (thioredoxin H1-like [Benincasa hispida])

HSP 1 Score: 210.7 bits (535), Expect = 6.7e-51
Identity = 103/114 (90.35%), Postives = 110/114 (96.49%), Query Frame = 0

Query: 1   MADMGKVVSCHTVGSWKQQLLKAKQCNKLVVVNFTATWCGPCRTMAPVLDDLAKK-TSND 60
           MADMGKVVSCHTVGSWKQQLLKAKQ NKLVVVNFTATWCGPCRTMAPVL+DLA K  +ND
Sbjct: 1   MADMGKVVSCHTVGSWKQQLLKAKQYNKLVVVNFTATWCGPCRTMAPVLEDLASKMRNND 60

Query: 61  VIFLKVDVDELMSVADELGVGALPSFQFFKNGKLVDKFVGARKDLLHNTVSKYV 114
           V+FLKVDVDELMSVA+ELGVGALPSFQFFKNGKLVDKFVGARKD+LH+TVSK+V
Sbjct: 61  VLFLKVDVDELMSVANELGVGALPSFQFFKNGKLVDKFVGARKDVLHSTVSKHV 114

BLAST of Lag0040845 vs. NCBI nr
Match: XP_004149943.1 (thioredoxin H1 [Cucumis sativus] >KGN50606.1 hypothetical protein Csa_021443 [Cucumis sativus])

HSP 1 Score: 205.3 bits (521), Expect = 2.8e-49
Identity = 99/114 (86.84%), Postives = 104/114 (91.23%), Query Frame = 0

Query: 1   MADMGKVVSCHTVGSWKQQLLKAKQCNKLVVVNFTATWCGPCRTMAPVLDDLAKKTSNDV 60
           M DMGKVVSCHTV SWKQQLLKAKQCNKLVVVNFTATWC PCR MAPVL+DLA K SN+V
Sbjct: 1   MNDMGKVVSCHTVRSWKQQLLKAKQCNKLVVVNFTATWCAPCRGMAPVLEDLANKMSNNV 60

Query: 61  IFLKVDVDELMSVADELGVGALPSFQFFKNGKLVDKFVGARKDLLHNTVSKYVS 115
            FLKVDVDELMSVA E GVGALPSFQFFKNGKLVDKFVGARKD+LH TVSK+V+
Sbjct: 61  TFLKVDVDELMSVASEYGVGALPSFQFFKNGKLVDKFVGARKDVLHKTVSKHVA 114

BLAST of Lag0040845 vs. NCBI nr
Match: XP_008464900.1 (PREDICTED: thioredoxin H1-like [Cucumis melo] >TYK21273.1 thioredoxin H1-like [Cucumis melo var. makuwa])

HSP 1 Score: 202.6 bits (514), Expect = 1.8e-48
Identity = 99/114 (86.84%), Postives = 104/114 (91.23%), Query Frame = 0

Query: 1   MADMGKVVSCHTVGSWKQQLLKAKQCNKLVVVNFTATWCGPCRTMAPVLDDLAKKTSNDV 60
           M DMGKVVSCHTVGSWKQQLLKAKQ NKLVVVNFTATWC PCR MAPVL DLA K SN+V
Sbjct: 1   MNDMGKVVSCHTVGSWKQQLLKAKQYNKLVVVNFTATWCAPCRGMAPVLKDLANKMSNNV 60

Query: 61  IFLKVDVDELMSVADELGVGALPSFQFFKNGKLVDKFVGARKDLLHNTVSKYVS 115
           I LKVDVDELMSVA+E GVGALPSFQFFKNGKLVDKFVGARKD+LH TVSK+V+
Sbjct: 61  IVLKVDVDELMSVANEYGVGALPSFQFFKNGKLVDKFVGARKDVLHKTVSKHVA 114

BLAST of Lag0040845 vs. NCBI nr
Match: KAA0051550.1 (thioredoxin H1-like [Cucumis melo var. makuwa])

HSP 1 Score: 201.8 bits (512), Expect = 3.1e-48
Identity = 99/113 (87.61%), Postives = 103/113 (91.15%), Query Frame = 0

Query: 1   MADMGKVVSCHTVGSWKQQLLKAKQCNKLVVVNFTATWCGPCRTMAPVLDDLAKKTSNDV 60
           M DMGKVVSCHTVGSWKQQLLKAKQ NKLVVVNFTATWC PCR MAPVL DLA K SN+V
Sbjct: 1   MNDMGKVVSCHTVGSWKQQLLKAKQYNKLVVVNFTATWCAPCRGMAPVLKDLANKMSNNV 60

Query: 61  IFLKVDVDELMSVADELGVGALPSFQFFKNGKLVDKFVGARKDLLHNTVSKYV 114
           I LKVDVDELMSVA+E GVGALPSFQFFKNGKLVDKFVGARKD+LH TVSK+V
Sbjct: 61  IVLKVDVDELMSVANEYGVGALPSFQFFKNGKLVDKFVGARKDVLHKTVSKHV 113

BLAST of Lag0040845 vs. NCBI nr
Match: XP_022942758.1 (thioredoxin H1-like [Cucurbita moschata] >KAG7030692.1 hypothetical protein SDJN02_04729, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 197.6 bits (501), Expect = 5.8e-47
Identity = 96/112 (85.71%), Postives = 104/112 (92.86%), Query Frame = 0

Query: 1   MADMGKVVSCHTVGSWKQQLLKAKQCNKLVVVNFTATWCGPCRTMAPVLDDLAKKTSNDV 60
           MADMGKVVSC TVGSWKQQ LKAKQ NKL+VVNFTATWC PCR MAP+LDDLAKK+ N+V
Sbjct: 1   MADMGKVVSCPTVGSWKQQFLKAKQHNKLLVVNFTATWCRPCRAMAPLLDDLAKKSCNNV 60

Query: 61  IFLKVDVDELMSVADELGVGALPSFQFFKNGKLVDKFVGARKDLLHNTVSKY 113
            FLKVDVDELMSVA+ELGVGALPSFQFFKNG+LVDKFVGA+KDLL NTVSK+
Sbjct: 61  TFLKVDVDELMSVANELGVGALPSFQFFKNGQLVDKFVGAKKDLLLNTVSKH 112

BLAST of Lag0040845 vs. ExPASy Swiss-Prot
Match: Q39362 (Thioredoxin H-type 2 OS=Brassica napus OX=3708 GN=THL-2 PE=2 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 3.6e-31
Identity = 62/111 (55.86%), Postives = 81/111 (72.97%), Query Frame = 0

Query: 2   ADMGKVVSCHTVGSWKQQLLKAKQCNKLVVVNFTATWCGPCRTMAPVLDDLAKKTSNDVI 61
           A+ G+V+ CH +  W  QL  AKQ NKL+V++FTA+WC PCR +APV  DLAKK  +  I
Sbjct: 3   AEEGQVIGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAI 62

Query: 62  FLKVDVDELMSVADELGVGALPSFQFFKNGKLVDKFVGARKDLLHNTVSKY 113
           F KVDVDEL +VA E GV A+P+F   K+G +VDK VGARK+ LH T++K+
Sbjct: 63  FFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKH 113

BLAST of Lag0040845 vs. ExPASy Swiss-Prot
Match: P29448 (Thioredoxin H1 OS=Arabidopsis thaliana OX=3702 GN=TRX1 PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 4.7e-31
Identity = 61/113 (53.98%), Postives = 86/113 (76.11%), Query Frame = 0

Query: 2   ADMGKVVSCHTVGSWKQQLLKAKQCNKLVVVNFTATWCGPCRTMAPVLDDLAKKTSNDVI 61
           ++ G+V++CHTV +W +QL KA +   LVVV+FTA+WCGPCR +AP   DLAKK  N V+
Sbjct: 3   SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN-VL 62

Query: 62  FLKVDVDELMSVADELGVGALPSFQFFKNGKLVDKFVGARKDLLHNTVSKYVS 115
           FLKVD DEL SVA +  + A+P+F F K GK++DK VGA+KD L +T++K+++
Sbjct: 63  FLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 114

BLAST of Lag0040845 vs. ExPASy Swiss-Prot
Match: Q39239 (Thioredoxin H4 OS=Arabidopsis thaliana OX=3702 GN=TRX4 PE=1 SV=2)

HSP 1 Score: 131.7 bits (330), Expect = 5.2e-30
Identity = 61/111 (54.95%), Postives = 80/111 (72.07%), Query Frame = 0

Query: 2   ADMGKVVSCHTVGSWKQQLLKAKQCNKLVVVNFTATWCGPCRTMAPVLDDLAKKTSNDVI 61
           A+ G+V+ CHT   W  QL KAK+ NKL+V++FTA+WC PCR +AP+ +DLAKK  +  I
Sbjct: 3   AEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAI 62

Query: 62  FLKVDVDELMSVADELGVGALPSFQFFKNGKLVDKFVGARKDLLHNTVSKY 113
           F KVDVDEL SVA E GV A+P+F F K G++VDK VGA K+ L   + K+
Sbjct: 63  FFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKH 113

BLAST of Lag0040845 vs. ExPASy Swiss-Prot
Match: Q43636 (Thioredoxin H-type OS=Ricinus communis OX=3988 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 5.2e-30
Identity = 61/113 (53.98%), Postives = 83/113 (73.45%), Query Frame = 0

Query: 2   ADMGKVVSCHTVGSWKQQLLKAKQCNKLVVVNFTATWCGPCRTMAPVLDDLAKKTSNDVI 61
           A+ G+V+ CHTV +W +QL K      L+VV+FTA+WCGPCR +AP L +LAKK  N V 
Sbjct: 3   AEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPN-VT 62

Query: 62  FLKVDVDELMSVADELGVGALPSFQFFKNGKLVDKFVGARKDLLHNTVSKYVS 115
           FLKVDVDEL +VA E  V ++P+F F K GK++DK VGA+KD L  T++K+++
Sbjct: 63  FLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKHMA 114

BLAST of Lag0040845 vs. ExPASy Swiss-Prot
Match: Q07090 (Thioredoxin H-type 2 OS=Nicotiana tabacum OX=4097 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 6.3e-28
Identity = 60/114 (52.63%), Postives = 80/114 (70.18%), Query Frame = 0

Query: 1   MADMGKVVSCHTVGSWKQQLLKAKQCNKLVVVNFTATWCGPCRTMAPVLDDLAKKTSNDV 60
           MA+ G+V+  HTV +W + L K     KL+VV+FTA+WCGPC+ +A    +LAKK    V
Sbjct: 1   MAEEGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPT-V 60

Query: 61  IFLKVDVDELMSVADELGVGALPSFQFFKNGKLVDKFVGARKDLLHNTVSKYVS 115
            FLKVDVDEL SVA +  V A+P+F F K GK+VDK VGA+KD L  T++K++S
Sbjct: 61  TFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKHIS 113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038893273.16.7e-5190.35thioredoxin H1-like [Benincasa hispida][more]
XP_004149943.12.8e-4986.84thioredoxin H1 [Cucumis sativus] >KGN50606.1 hypothetical protein Csa_021443 [Cu... [more]
XP_008464900.11.8e-4886.84PREDICTED: thioredoxin H1-like [Cucumis melo] >TYK21273.1 thioredoxin H1-like [C... [more]
KAA0051550.13.1e-4887.61thioredoxin H1-like [Cucumis melo var. makuwa][more]
XP_022942758.15.8e-4785.71thioredoxin H1-like [Cucurbita moschata] >KAG7030692.1 hypothetical protein SDJN... [more]
Match NameE-valueIdentityDescription
Q393623.6e-3155.86Thioredoxin H-type 2 OS=Brassica napus OX=3708 GN=THL-2 PE=2 SV=1[more]
P294484.7e-3153.98Thioredoxin H1 OS=Arabidopsis thaliana OX=3702 GN=TRX1 PE=1 SV=1[more]
Q392395.2e-3054.95Thioredoxin H4 OS=Arabidopsis thaliana OX=3702 GN=TRX4 PE=1 SV=2[more]
Q436365.2e-3053.98Thioredoxin H-type OS=Ricinus communis OX=3988 PE=3 SV=1[more]
Q070906.3e-2852.63Thioredoxin H-type 2 OS=Nicotiana tabacum OX=4097 PE=3 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00421THIOREDOXINcoord: 78..89
score: 35.09
coord: 38..47
score: 62.72
coord: 30..38
score: 53.52
NoneNo IPR availableGENE3D3.40.30.10Glutaredoxincoord: 1..114
e-value: 3.2E-36
score: 125.9
NoneNo IPR availablePANTHERPTHR10438THIOREDOXINcoord: 1..112
NoneNo IPR availablePANTHERPTHR10438:SF431THIOREDOXINcoord: 1..112
NoneNo IPR availableCDDcd02947TRX_familycoord: 18..102
e-value: 3.03988E-33
score: 109.57
IPR013766Thioredoxin domainPFAMPF00085Thioredoxincoord: 9..109
e-value: 4.0E-28
score: 97.4
IPR013766Thioredoxin domainPROSITEPS51352THIOREDOXIN_2coord: 1..114
score: 12.243704
IPR017937Thioredoxin, conserved sitePROSITEPS00194THIOREDOXIN_1coord: 31..49
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 4..112

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0040845.1Lag0040845.1mRNA