Lag0040843 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040843
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Thioredoxin
Location	chr13: 8928212 .. 8928872 (-)
RNA-Seq Expression	Lag0040843
Synteny	Lag0040843

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAAATGGGGAAAGTGATCTCATGCCACACTGTCGCCTCTTGGAGACAACAACTCCTCAAAGCCAAACAATCCAACAAACTGGTAAGAAAGATAGGAATAATATTACATGTTGAGGATCCCACATTGAAAAGATTAGTGGAGACATCATAATTTATAAACTACAAGGGTCACTCCACTCATTACCAATTGATTTTGATATGGAACCTCATGTTATTTGATACTAAAGAAGAAGTTGCTCGTGTTCACAATTAGCTTTATTTTTTGTGGTTGAATCAGGTCGTTGTGAATTTTACTGTAACAACATTTTGCGGCCCCTGTCGCGCCATGGCTCCTGTTGTTGAAGAATTAGCAAAGAAAATGAATAATGTCATATTCTTGAAAGTGGACATCGATGAACTCATGGTAAGAACTCAAACTCAGTCTGCCCACCATCGAAGCTCTATTATTGTCTATGATGTTTTACAAACCTTTTTCTCTCAAAGTATCAATCTTTTCAATGTTTATTTATTTTTCTCTTCTTCAGAGTGTTGCGAGGGAGTTTGGAGTGGGTACCACTCCTTCATTTCAATTCTTAAAGAATGGAAAGTTGGTGGACAAGTTCGTGGGTGCAAACAAAGATTTATTGCAAACCACTATCTCCAAACATGCCACATGA

mRNA sequence

ATGGCAGAAATGGGGAAAGTGATCTCATGCCACACTGTCGCCTCTTGGAGACAACAACTCCTCAAAGCCAAACAATCCAACAAACTGGTCGTTGTGAATTTTACTGTAACAACATTTTGCGGCCCCTGTCGCGCCATGGCTCCTGTTGTTGAAGAATTAGCAAAGAAAATGAATAATGTCATATTCTTGAAAGTGGACATCGATGAACTCATGAGTGTTGCGAGGGAGTTTGGAGTGGGTACCACTCCTTCATTTCAATTCTTAAAGAATGGAAAGTTGGTGGACAAGTTCGTGGGTGCAAACAAAGATTTATTGCAAACCACTATCTCCAAACATGCCACATGA

Coding sequence (CDS)

ATGGCAGAAATGGGGAAAGTGATCTCATGCCACACTGTCGCCTCTTGGAGACAACAACTCCTCAAAGCCAAACAATCCAACAAACTGGTCGTTGTGAATTTTACTGTAACAACATTTTGCGGCCCCTGTCGCGCCATGGCTCCTGTTGTTGAAGAATTAGCAAAGAAAATGAATAATGTCATATTCTTGAAAGTGGACATCGATGAACTCATGAGTGTTGCGAGGGAGTTTGGAGTGGGTACCACTCCTTCATTTCAATTCTTAAAGAATGGAAAGTTGGTGGACAAGTTCGTGGGTGCAAACAAAGATTTATTGCAAACCACTATCTCCAAACATGCCACATGA

Protein sequence

MAEMGKVISCHTVASWRQQLLKAKQSNKLVVVNFTVTTFCGPCRAMAPVVEELAKKMNNVIFLKVDIDELMSVAREFGVGTTPSFQFLKNGKLVDKFVGANKDLLQTTISKHAT

Homology

[Close]

BLAST of Lag0040843 vs. NCBI nr
Match: XP_038893093.1 (thioredoxin H1-like [Benincasa hispida])

HSP 1 Score: 190.3 bits (482), Expect = 9.3e-45
Identity = 91/113 (80.53%), Postives = 105/113 (92.92%), Query Frame = 0


Query: 1   MAEMGKVISCHTVASWRQQLLKAKQSNKLVVVNFTVTTFCGPCRAMAPVVEELAKKMNNV 60
           MAEMGKVISCHTV+SW QQLLKAKQ NKLVVVNFT  T+CGPCRAMAP+VEEL+KKM+NV
Sbjct: 1   MAEMGKVISCHTVSSWNQQLLKAKQCNKLVVVNFT-ATWCGPCRAMAPIVEELSKKMSNV 60

Query: 61  IFLKVDIDELMSVAREFGVGTTPSFQFLKNGKLVDKFVGANKDLLQTTISKHA 114
           IFLKVDIDELMS+A+E GV + PSFQF+KNGK+VDKFVGA KDLL++T++KHA
Sbjct: 61  IFLKVDIDELMSIAKELGVSSIPSFQFIKNGKVVDKFVGAKKDLLKSTVAKHA 112

[Close]

BLAST of Lag0040843 vs. NCBI nr
Match: XP_008464899.1 (PREDICTED: thioredoxin H-type-like [Cucumis melo])

HSP 1 Score: 185.3 bits (469), Expect = 3.0e-43
Identity = 92/114 (80.70%), Postives = 105/114 (92.11%), Query Frame = 0


Query: 1   MAEMGKVISCHTVASWRQQLLKAKQSNKLVVVNFTVTTFCGPCRAMAPVVEELAKKM-NN 60
           MAEMGKVISCHTV+SW+Q LLKA+Q NKLVVVNFT  ++CGPCR MAP++EELAKKM NN
Sbjct: 1   MAEMGKVISCHTVSSWKQHLLKAEQYNKLVVVNFT-ASWCGPCRFMAPILEELAKKMSNN 60

Query: 61  VIFLKVDIDELMSVAREFGVGTTPSFQFLKNGKLVDKFVGANKDLLQTTISKHA 114
           VIFLKVDIDELMS+A+EFGV + PSFQFLKNGKLVDKFVGA K+LLQ+TISKH+
Sbjct: 61  VIFLKVDIDELMSIAKEFGVSSVPSFQFLKNGKLVDKFVGAKKNLLQSTISKHS 113

[Close]

BLAST of Lag0040843 vs. NCBI nr
Match: XP_004149944.1 (thioredoxin H-type [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 5.1e-43
Identity = 92/114 (80.70%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 1   MAEMGKVISCHTVASWRQQLLKAKQSNKLVVVNFTVTTFCGPCRAMAPVVEELAKKM-NN 60
           MAEMGKVISCHTV+SW+Q LLKA+Q NKLVVVNFT  ++CGPCR MAP++EELAKKM NN
Sbjct: 1   MAEMGKVISCHTVSSWKQHLLKAEQCNKLVVVNFT-ASWCGPCRFMAPILEELAKKMSNN 60

Query: 61  VIFLKVDIDELMSVAREFGVGTTPSFQFLKNGKLVDKFVGANKDLLQTTISKHA 114
           VIFLKVDIDELMS+A+EFGV + PSFQFLKNGKLVDKFVGA K LLQ TISKH+
Sbjct: 61  VIFLKVDIDELMSIAKEFGVSSVPSFQFLKNGKLVDKFVGAKKTLLQNTISKHS 113

[Close]

BLAST of Lag0040843 vs. NCBI nr
Match: KAE8648009.1 (hypothetical protein Csa_021401 [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 5.1e-43
Identity = 92/114 (80.70%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 1   MAEMGKVISCHTVASWRQQLLKAKQSNKLVVVNFTVTTFCGPCRAMAPVVEELAKKM-NN 60
           MAEMGKVISCHTV+SW+Q LLKA+Q NKLVVVNFT  ++CGPCR MAP++EELAKKM NN
Sbjct: 28  MAEMGKVISCHTVSSWKQHLLKAEQCNKLVVVNFT-ASWCGPCRFMAPILEELAKKMSNN 87

Query: 61  VIFLKVDIDELMSVAREFGVGTTPSFQFLKNGKLVDKFVGANKDLLQTTISKHA 114
           VIFLKVDIDELMS+A+EFGV + PSFQFLKNGKLVDKFVGA K LLQ TISKH+
Sbjct: 88  VIFLKVDIDELMSIAKEFGVSSVPSFQFLKNGKLVDKFVGAKKTLLQNTISKHS 140

[Close]

BLAST of Lag0040843 vs. NCBI nr
Match: XP_022139257.1 (thioredoxin H1-like [Momordica charantia])

HSP 1 Score: 179.9 bits (455), Expect = 1.3e-41
Identity = 88/113 (77.88%), Postives = 98/113 (86.73%), Query Frame = 0


Query: 1   MAEMGKVISCHTVASWRQQLLKAKQSNKLVVVNFTVTTFCGPCRAMAPVVEELAKKMNNV 60
           MAEMGKV+SC +V SW+QQLLKAK+ NKLVVV FT  T+CGPCRAMAPV+E+LAKK +NV
Sbjct: 1   MAEMGKVVSCRSVGSWKQQLLKAKKYNKLVVVKFT-ATWCGPCRAMAPVLEDLAKKTSNV 60

Query: 61  IFLKVDIDELMSVAREFGVGTTPSFQFLKNGKLVDKFVGANKDLLQTTISKHA 114
           IFLKVD+DELM VA E GVG  PSFQF KNGKLVDKFVGANKDLL  T+SKHA
Sbjct: 61  IFLKVDVDELMRVANELGVGAIPSFQFFKNGKLVDKFVGANKDLLTNTLSKHA 112

[Close]

BLAST of Lag0040843 vs. ExPASy Swiss-Prot
Match: P29448 (Thioredoxin H1 OS=Arabidopsis thaliana OX=3702 GN=TRX1 PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 8.0e-31
Identity = 64/111 (57.66%), Postives = 85/111 (76.58%), Query Frame = 0


Query: 2   AEMGKVISCHTVASWRQQLLKAKQSNKLVVVNFTVTTFCGPCRAMAPVVEELAKKMNNVI 61
           +E G+VI+CHTV +W +QL KA +S  LVVV+FT  ++CGPCR +AP   +LAKK+ NV+
Sbjct: 3   SEEGQVIACHTVETWNEQLQKANESKTLVVVDFT-ASWCGPCRFIAPFFADLAKKLPNVL 62

Query: 62  FLKVDIDELMSVAREFGVGTTPSFQFLKNGKLVDKFVGANKDLLQTTISKH 113
           FLKVD DEL SVA ++ +   P+F FLK GK++DK VGA KD LQ+TI+KH
Sbjct: 63  FLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKH 112

[Close]

BLAST of Lag0040843 vs. ExPASy Swiss-Prot
Match: Q43636 (Thioredoxin H-type OS=Ricinus communis OX=3988 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-30
Identity = 64/111 (57.66%), Postives = 83/111 (74.77%), Query Frame = 0


Query: 2   AEMGKVISCHTVASWRQQLLKAKQSNKLVVVNFTVTTFCGPCRAMAPVVEELAKKMNNVI 61
           AE G+VI CHTV +W +QL K   +  L+VV+FT  ++CGPCR +AP + ELAKK+ NV 
Sbjct: 3   AEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFT-ASWCGPCRFIAPFLAELAKKLPNVT 62

Query: 62  FLKVDIDELMSVAREFGVGTTPSFQFLKNGKLVDKFVGANKDLLQTTISKH 113
           FLKVD+DEL +VA E+ V + P+F FLK GK++DK VGA KD LQ TI+KH
Sbjct: 63  FLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKH 112

[Close]

BLAST of Lag0040843 vs. ExPASy Swiss-Prot
Match: Q39239 (Thioredoxin H4 OS=Arabidopsis thaliana OX=3702 GN=TRX4 PE=1 SV=2)

HSP 1 Score: 129.4 bits (324), Expect = 2.6e-29
Identity = 65/112 (58.04%), Postives = 84/112 (75.00%), Query Frame = 0


Query: 2   AEMGKVISCHTVASWRQQLLKAKQSNKLVVVNFTVTTFCGPCRAMAPVVEELAKK-MNNV 61
           AE G+VI CHT   W  QL KAK+SNKL+V++FT  ++C PCR +AP+  +LAKK M++ 
Sbjct: 3   AEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFT-ASWCPPCRMIAPIFNDLAKKFMSSA 62

Query: 62  IFLKVDIDELMSVAREFGVGTTPSFQFLKNGKLVDKFVGANKDLLQTTISKH 113
           IF KVD+DEL SVA+EFGV   P+F F+K G++VDK VGANK+ LQ  I KH
Sbjct: 63  IFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKH 113

[Close]

BLAST of Lag0040843 vs. ExPASy Swiss-Prot
Match: Q07090 (Thioredoxin H-type 2 OS=Nicotiana tabacum OX=4097 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 8.3e-28
Identity = 63/112 (56.25%), Postives = 78/112 (69.64%), Query Frame = 0


Query: 1   MAEMGKVISCHTVASWRQQLLKAKQSNKLVVVNFTVTTFCGPCRAMAPVVEELAKKMNNV 60
           MAE G+VI  HTV +W + L K     KL+VV+FT  ++CGPC+ +A    ELAKKM  V
Sbjct: 1   MAEEGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFT-ASWCGPCKFIASFYAELAKKMPTV 60

Query: 61  IFLKVDIDELMSVAREFGVGTTPSFQFLKNGKLVDKFVGANKDLLQTTISKH 113
            FLKVD+DEL SVA ++ V   P+F FLK GK+VDK VGA KD LQ TI+KH
Sbjct: 61  TFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKH 111

[Close]

BLAST of Lag0040843 vs. ExPASy Swiss-Prot
Match: Q39362 (Thioredoxin H-type 2 OS=Brassica napus OX=3708 GN=THL-2 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-27
Identity = 62/112 (55.36%), Postives = 82/112 (73.21%), Query Frame = 0


Query: 2   AEMGKVISCHTVASWRQQLLKAKQSNKLVVVNFTVTTFCGPCRAMAPVVEELAKK-MNNV 61
           AE G+VI CH +  W  QL  AKQSNKL+V++FT  ++C PCR +APV  +LAKK M++ 
Sbjct: 3   AEEGQVIGCHEIDVWAVQLDTAKQSNKLIVIDFT-ASWCPPCRMIAPVFADLAKKFMSSA 62

Query: 62  IFLKVDIDELMSVAREFGVGTTPSFQFLKNGKLVDKFVGANKDLLQTTISKH 113
           IF KVD+DEL +VA+EFGV   P+F  +K+G +VDK VGA K+ L  TI+KH
Sbjct: 63  IFFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKH 113

The following BLAST results are available for this feature:

BLAST of Lag0040843 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893093.1	9.3e-45	80.53	thioredoxin H1-like [Benincasa hispida]	[more]
XP_008464899.1	3.0e-43	80.70	PREDICTED: thioredoxin H-type-like [Cucumis melo]	[more]
XP_004149944.1	5.1e-43	80.70	thioredoxin H-type [Cucumis sativus]	[more]
KAE8648009.1	5.1e-43	80.70	hypothetical protein Csa_021401 [Cucumis sativus]	[more]
XP_022139257.1	1.3e-41	77.88	thioredoxin H1-like [Momordica charantia]	[more]

BLAST of Lag0040843 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P29448	8.0e-31	57.66	Thioredoxin H1 OS=Arabidopsis thaliana OX=3702 GN=TRX1 PE=1 SV=1	[more]
Q43636	1.4e-30	57.66	Thioredoxin H-type OS=Ricinus communis OX=3988 PE=3 SV=1	[more]
Q39239	2.6e-29	58.04	Thioredoxin H4 OS=Arabidopsis thaliana OX=3702 GN=TRX4 PE=1 SV=2	[more]
Q07090	8.3e-28	56.25	Thioredoxin H-type 2 OS=Nicotiana tabacum OX=4097 PE=3 SV=1	[more]
Q39362	1.1e-27	55.36	Thioredoxin H-type 2 OS=Brassica napus OX=3708 GN=THL-2 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 10..110 e-value: 4.7E-24 score: 84.4
IPR013766	Thioredoxin domain	PROSITE	PS51352	THIOREDOXIN_2	coord: 1..114 score: 12.091478
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 1..114 e-value: 2.4E-34 score: 119.9
None	No IPR available	PANTHER	PTHR10438	THIOREDOXIN	coord: 1..113
None	No IPR available	PANTHER	PTHR10438:SF431	THIOREDOXIN	coord: 1..113
None	No IPR available	CDD	cd02947	TRX_family	coord: 18..102 e-value: 7.62181E-33 score: 108.414
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 4..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040843.1	Lag0040843.1	mRNA