Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATCAACAAGAATTCCTCCAAAAATGACCTTGAATTGGTAGCCACAGCGTGCTGGACTATCTGGAATGACAGAAACAAAGTCATTCATGGAGAAGTTGTTCCACCAACAA GTTTACGAAGCAACTGGATATATAACTACTTGAAGAAATTCCAGAAAGCAAATGTGAAATCGGCTCCGAAAAGAATTTTAAACCCTACCAATGAACAAACAAAAATGAGATCAGGAAGATAAACCTTAAATGACGATTCACTCAAAATTCAGGGATCGGTTTTCTGCGTACGAATTCAGAAGGAGATTTGGTAGGCGCTTCAGCATCGTATGTGAACATGGATTTCAAGGCTTCCCTAGCTGAATTGATAGCAATAAGTGAGGGGTTAAGGCTGGCAAAAATGCTTGGATATGTCAAAATTATGGTTATATCCGACTGTTTACAGGCTATCAAGTTTGTCTCAAAGAATTTTGAACCATGGTGTGAAGTGGAAGCCCAAGTGAAAGAAATTTGGGAGCTGTCAGATCATTGTAATGAATGTAATTTTAGCCATATCTCTAGGGAGAAAAATAAAGCAGCTGACTATATTGCTAAGGAAGCGAAAAGGCTTGAGCTTAATTAA mRNA sequence
ATGAAGATCAACAAGAATTCCTCCAAAAATGACCTTGAATTGGTAGCCACAGCGTGCTGGACTATCTGGAATGACAGAAACAAAGTCATTCATGGAGAAGTTGTTCCACCAACAAGGATCGGTTTTCTGCGTACGAATTCAGAAGGAGATTTGGTAGGCGCTTCAGCATCGTATGTGAACATGGATTTCAAGGCTTCCCTAGCTGAATTGATAGCAATAAGTGAGGGGTTAAGGCTGGCAAAAATGCTTGGATATGTCAAAATTATGGTTATATCCGACTGTTTACAGGCTATCAAGTTTGTCTCAAAGAATTTTGAACCATGGTGTGAAGTGGAAGCCCAAGTGAAAGAAATTTGGGAGCTGTCAGATCATTGTAATGAATGTAATTTTAGCCATATCTCTAGGGAGAAAAATAAAGCAGCTGACTATATTGCTAAGGAAGCGAAAAGGCTTGAGCTTAATTAA Coding sequence (CDS)
ATGAAGATCAACAAGAATTCCTCCAAAAATGACCTTGAATTGGTAGCCACAGCGTGCTGGACTATCTGGAATGACAGAAACAAAGTCATTCATGGAGAAGTTGTTCCACCAACAAGGATCGGTTTTCTGCGTACGAATTCAGAAGGAGATTTGGTAGGCGCTTCAGCATCGTATGTGAACATGGATTTCAAGGCTTCCCTAGCTGAATTGATAGCAATAAGTGAGGGGTTAAGGCTGGCAAAAATGCTTGGATATGTCAAAATTATGGTTATATCCGACTGTTTACAGGCTATCAAGTTTGTCTCAAAGAATTTTGAACCATGGTGTGAAGTGGAAGCCCAAGTGAAAGAAATTTGGGAGCTGTCAGATCATTGTAATGAATGTAATTTTAGCCATATCTCTAGGGAGAAAAATAAAGCAGCTGACTATATTGCTAAGGAAGCGAAAAGGCTTGAGCTTAATTAA Protein sequence
MKINKNSSKNDLELVATACWTIWNDRNKVIHGEVVPPTRIGFLRTNSEGDLVGASASYVNMDFKASLAELIAISEGLRLAKMLGYVKIMVISDCLQAIKFVSKNFEPWCEVEAQVKEIWELSDHCNECNFSHISREKNKAADYIAKEAKRLELN
Homology
BLAST of Lag0040840 vs. NCBI nr
Match:
XP_016482447.1 (PREDICTED: uncharacterized protein LOC107803276 [Nicotiana tabacum])
HSP 1 Score: 68.6 bits (166), Expect = 5.5e-08
Identity = 46/139 (33.09%), Postives = 66/139 (47.48%), Query Frame = 0
Query: 20 WTIWNDRNKVIHGEVVPP----------TRIGFLRTNSEGDLVGASASYVNMDFKASLAE 79 W +W RN HGE+V + IGF+ +S+GD+ A + AE Sbjct: 967 WELWKRRNCQKHGEMVNTDGASRGNPGRSSIGFVLRDSKGDVRYARGKEIKEGTNME-AE 1026 Query: 80 LIAISEGLRLAKMLGYVKIMVISDCLQAIKFVSKNFEPWCEVEAQVKEIWELSDHCNECN 139 IAI E ++ GY I + +D L + ++P +EA V+EI + CN C Sbjct: 1027 TIAILEAIQTCVQQGYANIHIQTDSLFLKNVIDGTWDPPWAIEAYVQEIKQFMARCN-CR 1086 Query: 140 FSHISREKNKAADYIAKEA 149 SHI RE NK AD++A A Sbjct: 1087 VSHIMREGNKLADFLANHA 1103
BLAST of Lag0040840 vs. NCBI nr
Match:
KAF5202092.1 (Ribonuclease h-like superfamily protein [Thalictrum thalictroides])
HSP 1 Score: 66.2 bits (160), Expect = 2.7e-07
Identity = 44/107 (41.12%), Postives = 63/107 (58.88%), Query Frame = 0
Query: 41 GFLRTNSEGDLVGASASYVNMDFKASL--AELIAISEGLRLAKMLGYVKIMVISDCLQAI 100 G L +SEG +V +Y F +S+ EL A+ +G++LAK G+ KI V SD L I Sbjct: 297 GGLLRDSEGQVV---CAYSGRGFSSSVYQQELNAVHKGIQLAKDQGFTKIEVASDSLGVI 356 Query: 101 KFVSKNFEPWCEVEAQVKEIWELSDHCNECNFSHISREKNKAADYIA 146 + ++K EP + + QV+EI EL+ E F H RE N+AADY+A Sbjct: 357 RTMNKMEEPPWDCQDQVREIRELAAWFEEIRFYHAFRETNRAADYLA 400
BLAST of Lag0040840 vs. NCBI nr
Match:
KAF5186334.1 (Ribonuclease h domain [Thalictrum thalictroides])
HSP 1 Score: 65.5 bits (158), Expect = 4.7e-07
Identity = 38/127 (29.92%), Postives = 63/127 (49.61%), Query Frame = 0
Query: 37 PTRIGFLRTNSEGDLVGASASYVNM------------------DFKASLAELIAISEGLR 96 P ++GF++ N++G L A Y + + EL+AI +G+ Sbjct: 220 PPKLGFVKLNTDGSLKKTRAGYGGLLRSNEGRVIECYTAQCKCNKSVLELELLAIQKGIE 279 Query: 97 LAKMLGYVKIMVISDCLQAIKFVSKNFEPWCEVEAQVKEIWELSDHCNECNFSHISREKN 146 L+ GY ++ V SD L+AI+ + K + + V++IWE +H E F+H RE N Sbjct: 280 LSIKEGYARLEVASDSLKAIQIIKKKARCPFQCRSTVQDIWEAQNHFEEVTFTHAYRETN 339
BLAST of Lag0040840 vs. NCBI nr
Match:
KAF7814237.1 (putative ribonuclease H protein At1g65750 family [Senna tora])
HSP 1 Score: 65.1 bits (157), Expect = 6.1e-07
Identity = 37/110 (33.64%), Postives = 58/110 (52.73%), Query Frame = 0
Query: 37 PTRIGFLRTNSEGDLVGASASYVNMDFKASLAELIAISEGLRLAKMLGYVKIMVISDCLQ 96 P G + N +G +G + Y+ AEL AI +GL LA G+++++V +DCL+ Sbjct: 400 PAGFGGIFRNEDGRWMGGFSGYIGTQTN-MFAELTAIKQGLSLAVNKGFLRLLVETDCLE 459 Query: 97 AIKFVSKNFEPWCEVEAQVKEIWELSDHCNECNFSHISREKNKAADYIAK 147 A+ +SK + + +I LS C +F HI RE N+ AD +AK Sbjct: 460 ALNLISKGDISTHHLGVIINDIRVLSSRCESISFKHIFREANQCADGLAK 508
BLAST of Lag0040840 vs. NCBI nr
Match:
XP_023915006.1 (uncharacterized protein LOC112026546 [Quercus suber])
HSP 1 Score: 63.5 bits (153), Expect = 1.8e-06
Identity = 51/204 (25.00%), Postives = 86/204 (42.16%), Query Frame = 0
Query: 1 MKINKNSSKNDLELVATACWTIWNDRNKVIH-GEVVPPTRI------------------- 60 + I KN S + LEL W+IW +RN+ +H G PP++I Sbjct: 279 LDIIKNDSSSALELFIAVAWSIWWNRNQALHEGSGAPPSQIWDMAIRILGEYKEACSFSN 338 Query: 61 ---------------GFLRTN--------------------SEGDLVGASASYVNMDFKA 120 GF + N S+G + AS ++ F A Sbjct: 339 LPLVSSLINWRPPPAGFTKINVDGAASDDGRPSSTGVIIRDSQGSSIAASCRVLSSPFPA 398 Query: 121 SLAELIAISEGLRLAKMLGYVKIMVISDCLQAIKFVSKNFEPWCEVEAQVKEIWELSDHC 150 ++E +A+ +G+ LA LG K++ SD L I+ +++ E+ ++ I +L+ Sbjct: 399 DISEALALQDGVMLALELGLSKVIFESDALSIIQAINEG-NVGGEIGHIMQNIKDLASSF 458
The following BLAST results are available for this feature:
Match Name E-value Identity Description
XP_016482447.1 5.5e-08 33.09 PREDICTED: uncharacterized protein LOC107803276 [Nicotiana tabacum] [more]
KAF5202092.1 2.7e-07 41.12 Ribonuclease h-like superfamily protein [Thalictrum thalictroides] [more]
KAF5186334.1 4.7e-07 29.92 Ribonuclease h domain [Thalictrum thalictroides] [more]
KAF7814237.1 6.1e-07 33.64 putative ribonuclease H protein At1g65750 family [Senna tora] [more]
XP_023915006.1 1.8e-06 25.00 uncharacterized protein LOC112026546 [Quercus suber] [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
A T G A A G A T C A A C A A G A A T T C C T C C A A A A A T G A C C T T G A A T T G G T A G C C A C A G C G T G C T G G A C T A T C T G G A A T G A C A G A A A C A A A G T C A T T C A T G G A G A A G T T G T T C C A C C A A C A A G G A T C G G T T T T C T G C G T A C G A A T T C A G A A G G A G A T T T G G T A G G C G C T T C A G C A T C G T A T G T G A A C A T G G A T T T C A A G G C T T C C C T A G C T G A A T T G A T A G C A A T A A G T G A G G G G T T A A G G C T G G C A A A A A T G C T T G G A T A T G T C A A A A T T A T G G T T A T A T C C G A C T G T T T A C A G G C T A T C A A G T T T G T C T C A A A G A A T T T T G A A C C A T G G T G T G A A G T G G A A G C C C A A G T G A A A G A A A T T T G G G A G C T G T C A G A T C A T T G T A A T G A A T G T A A T T T T A G C C A T A T C T C T A G G G A G A A A A A T A A A G C A G C T G A C T A T A T T G C T A A G G A A G C G A A A A G G C T T G A G C T T A A T T A A 50 100 150 200 250 300 350 400 450 Expect = 1.7E-14 / Score = 56.0 Expect = 1.0E-19 / Score = 70.5 Score = Score = Expect = 1.06656E-16 / Score = 69.6504 Score = Sequence G3DSA:3.30.420.10 PF13456 PTHR33033 PTHR33033:SF67 cd06222 SSF53098
IPR Term IPR Description Source Source Term Source Description Alignment
IPR036397 Ribonuclease H superfamily GENE3D 3.30.420.10 coord: 7..149 e-value: 1.7E-14 score: 56.0
IPR002156 Ribonuclease H domain PFAM PF13456 RVT_3 coord: 38..148 e-value: 1.0E-19 score: 70.5
None No IPR available PANTHER PTHR33033 POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED coord: 38..150
None No IPR available PANTHER PTHR33033:SF67 SUBFAMILY NOT NAMED coord: 38..150
IPR044730 Ribonuclease H-like domain, plant type CDD cd06222 RNase_H_like coord: 41..146 e-value: 1.06656E-16 score: 69.6504
IPR012337 Ribonuclease H-like superfamily SUPERFAMILY 53098 Ribonuclease H-like coord: 48..151
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0003676
nucleic acid binding
molecular_function
GO:0004523
RNA-DNA hybrid ribonuclease activity