Lag0040838 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040838
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Encodes a protein involved in salt tolerance, names SIS (Salt Induced Serine rich).
Location	chr13: 8862680 .. 8864424 (+)
RNA-Seq Expression	Lag0040838
Synteny	Lag0040838

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAACAAGAAGCAAGTGGCTGCCTCTTCATCTTCAAGTTTGGATCATCTTTTTGGTCCCATGGACTCAAATTCAGCTTCTTCAACATCTACTACTGGATATTTTGGCTCTATTTTCCCACCACTGGTTTGTACCTTAACTTCAATTACTAGTTAATGTTTTTGTTTTTTTTTTCTTTAATCTCTCTCTTTCATTCTCTCTCTCTTTATATGTGGATTTCCTGAACTGGGTCACTTTCAGTATTTGCTTGTTGATTTTGCATGTCTCAAGTTGATGATATGACAGGTTAAAAAATCGGCTGAACAGGAATAAGAAAGCTTATTAGCTTGGGAATTCAAGTAATGGAAGTTTAGTTTCTTCCTAATGGAGATAAAAAGTACTTGTTAAAGGAATTCAAAAGTAGTCCTGTTCTGCTCTGTTCTGTATGAAAAATTTCATGGGATTCTTAAAGCATTTTTTGAACTTTTCTTCTCTGGTTTTAGGTGGTGGAGAGAGAGAGAAAACAGGATGTTGGAAATCAAGTTTCCACTGGCAAAGTTGAGATTTCAGGTTCTTTCACCTTCTAAAACTTGAATTTACACATCTCCCTCACAAAGGATAAGAAACCTATGTCACCTAAGGCCCCGTTTGGATAACCATTTGGTTTTTTGTTTATGATTTTTGGTTTTAAGCTTATAAAACACCTCTTCCAACTCTAAGTTTCTTTAGCTTTTCACCTACTTTCTTCCCACTCTAAGTTTCTTTAGCTTTTCACCTACTTTCTTCCCATGTTTTCAAAAACCAAGCCAATTTTTGAAAACTAAAAAAAGTAGTTTTCAAAAACCTGTTTTTGTTTTTAGAATTTGGTTAGAAATTCAAGTATGTCTTTAACAAAAATGAAAACCATGGTTAGGAAATTTAAAGAAAACAAGCCTAATTTTCAAAAACCAAAAACCAAAAACCAAATAGTTATCAAACGGGGCCTAAGTAATCTCTCATGGTTTCCACTATTGAATATCTTTTCAAAAATGATATGAACTCCATTTATGTAAAACTGGCTTTTGTTCCTCTCAGATAATGCTTGTATAAATGGCAAGAACGGAACTGGTGGTGCAACTGGGAAAGATGCAAACTCCATGTATGAGAATGAATGTATGGAACCAAGTTACTTTAGTTCCTCCATCTTTTATGGTGGTCAAGAAAATTACTCCCCAAGAACTAAGGCCTCAGAAGCCCACCACCATAATGTAAGCATTTCAAAATAATCATATGCCATCTTCTTTGTAGTTTTCTTTAGTGTTTGGATGAAACTGGAAGGCTTTTTGTTGGGATCTTAATGGACATATGAAAAGAGATTCGATAGTGTTGTGTTGATTACTTGATTGATCTGATACACACTGATGTTATGGAATCAACATTTTATCAGTTTAAGAAAGAAGGGAAAGACAATGATGTAAATGGAAGCAATTCAAACTCTGCTTCAAGAGGAAACTGGTGGAAGGGTATGACAACTTCCATGAATTTACTGTTAGACAAAGAAGAGATGATGATTTTAACAAAATTTTTAACTTAGCCATTTGTCTTTTCAGGTTCTCTTTATTACTAACACTCCAATCATATGGGATTTCCCACCTATAGGTAATACCGAACTATCGTCTCGGTTACTCGGTGAAACTTGCTCCTCTCATGATTTTCATGAATGTTTTCTTCCATTTTGATATATTTCAGATTATTATCTGGATTTGGTAAACCTGAAGACATGA

mRNA sequence

ATGGAGAACAAGAAGCAAGTGGCTGCCTCTTCATCTTCAAGTTTGGATCATCTTTTTGGTCCCATGGACTCAAATTCAGCTTCTTCAACATCTACTACTGGATATTTTGGCTCTATTTTCCCACCACTGGTGGTGGAGAGAGAGAGAAAACAGGATGTTGGAAATCAAGTTTCCACTGGCAAAGTTGAGATTTCAGATAATGCTTGTATAAATGGCAAGAACGGAACTGGTGGTGCAACTGGGAAAGATGCAAACTCCATGTATGAGAATGAATGTATGGAACCAAGTTACTTTAGTTCCTCCATCTTTTATGGTGGTCAAGAAAATTACTCCCCAAGAACTAAGGCCTCAGAAGCCCACCACCATAATTTTAAGAAAGAAGGGAAAGACAATGATGTAAATGGAAGCAATTCAAACTCTGCTTCAAGAGGAAACTGGTGGAAGGATTATTATCTGGATTTGGTAAACCTGAAGACATGA

Coding sequence (CDS)

ATGGAGAACAAGAAGCAAGTGGCTGCCTCTTCATCTTCAAGTTTGGATCATCTTTTTGGTCCCATGGACTCAAATTCAGCTTCTTCAACATCTACTACTGGATATTTTGGCTCTATTTTCCCACCACTGGTGGTGGAGAGAGAGAGAAAACAGGATGTTGGAAATCAAGTTTCCACTGGCAAAGTTGAGATTTCAGATAATGCTTGTATAAATGGCAAGAACGGAACTGGTGGTGCAACTGGGAAAGATGCAAACTCCATGTATGAGAATGAATGTATGGAACCAAGTTACTTTAGTTCCTCCATCTTTTATGGTGGTCAAGAAAATTACTCCCCAAGAACTAAGGCCTCAGAAGCCCACCACCATAATTTTAAGAAAGAAGGGAAAGACAATGATGTAAATGGAAGCAATTCAAACTCTGCTTCAAGAGGAAACTGGTGGAAGGATTATTATCTGGATTTGGTAAACCTGAAGACATGA

Protein sequence

MENKKQVAASSSSSLDHLFGPMDSNSASSTSTTGYFGSIFPPLVVERERKQDVGNQVSTGKVEISDNACINGKNGTGGATGKDANSMYENECMEPSYFSSSIFYGGQENYSPRTKASEAHHHNFKKEGKDNDVNGSNSNSASRGNWWKDYYLDLVNLKT

Homology

[Close]

BLAST of Lag0040838 vs. NCBI nr
Match: XP_022139159.1 (uncharacterized protein LOC111010132 [Momordica charantia])

HSP 1 Score: 237.3 bits (604), Expect = 9.3e-59
Identity = 123/148 (83.11%), Postives = 131/148 (88.51%), Query Frame = 0


Query: 1   MENKKQVAASSSSSLDHLFGPMDSNSASSTSTTGYFGSIFPPLVVERERKQDVGNQVSTG 60
           ME KKQVAASSSSSLDHLFGPMDSNSASSTST GYFGSIFPP VVERERKQDVGN+  T 
Sbjct: 1   MEXKKQVAASSSSSLDHLFGPMDSNSASSTSTAGYFGSIFPPPVVERERKQDVGNRXGTC 60

Query: 61  KVEISDNACINGKNGTGGATGKDANSMYENECMEPSYFSSSIFYGGQENYSPRTKASEAH 120
            V   DNA +NGKNGTGGATGKDA+SMY+NE M PSYFSSSI YGGQENYSPRTKASE+ 
Sbjct: 61  NVGNPDNASLNGKNGTGGATGKDASSMYQNETMGPSYFSSSILYGGQENYSPRTKASES- 120

Query: 121 HHNFKKEGKDNDVNGSNSNSASRGNWWK 149
           HHNFKKEGKD++VNG N NSASRGNWW+
Sbjct: 121 HHNFKKEGKDDEVNGGNPNSASRGNWWE 147

[Close]

BLAST of Lag0040838 vs. NCBI nr
Match: XP_038892196.1 (uncharacterized protein LOC120081420 isoform X2 [Benincasa hispida])

HSP 1 Score: 230.7 bits (587), Expect = 8.7e-57
Identity = 120/149 (80.54%), Postives = 131/149 (87.92%), Query Frame = 0


Query: 1   MENKK-QVAASSSSSLDHLFGPMDSNSASSTSTTGYFGSIFPPLVVERERKQDVGNQVST 60
           MENKK QVA SSSSSLDH+FGP+DSNSASSTSTTGYFGSIFPP VVER RK+DVGNQVS+
Sbjct: 1   MENKKLQVATSSSSSLDHIFGPVDSNSASSTSTTGYFGSIFPPPVVERARKKDVGNQVSS 60

Query: 61  GKVEISDNACINGKNGTGGATGKDANSMYENECMEPSYFSSSIFYGGQENYSPRTKASEA 120
           G++   DNA INGK GT GA GKD +S+Y+NE MEPSYFSSSIFYGGQENYSPRT AS++
Sbjct: 61  GELGNPDNASINGKKGTAGANGKDESSIYQNETMEPSYFSSSIFYGGQENYSPRTNASQS 120

Query: 121 HHHNFKKEGKDNDVNGSNSNSASRGNWWK 149
            HHNFKKEGKDND N SNSNS SRGNWWK
Sbjct: 121 -HHNFKKEGKDNDANESNSNSVSRGNWWK 148

[Close]

BLAST of Lag0040838 vs. NCBI nr
Match: XP_038892195.1 (uncharacterized protein LOC120081420 isoform X1 [Benincasa hispida])

HSP 1 Score: 230.7 bits (587), Expect = 8.7e-57
Identity = 120/149 (80.54%), Postives = 131/149 (87.92%), Query Frame = 0


Query: 1   MENKK-QVAASSSSSLDHLFGPMDSNSASSTSTTGYFGSIFPPLVVERERKQDVGNQVST 60
           MENKK QVA SSSSSLDH+FGP+DSNSASSTSTTGYFGSIFPP VVER RK+DVGNQVS+
Sbjct: 1   MENKKLQVATSSSSSLDHIFGPVDSNSASSTSTTGYFGSIFPPPVVERARKKDVGNQVSS 60

Query: 61  GKVEISDNACINGKNGTGGATGKDANSMYENECMEPSYFSSSIFYGGQENYSPRTKASEA 120
           G++   DNA INGK GT GA GKD +S+Y+NE MEPSYFSSSIFYGGQENYSPRT AS++
Sbjct: 61  GELGNPDNASINGKKGTAGANGKDESSIYQNETMEPSYFSSSIFYGGQENYSPRTNASQS 120

Query: 121 HHHNFKKEGKDNDVNGSNSNSASRGNWWK 149
            HHNFKKEGKDND N SNSNS SRGNWWK
Sbjct: 121 -HHNFKKEGKDNDANESNSNSVSRGNWWK 148

[Close]

BLAST of Lag0040838 vs. NCBI nr
Match: KAA0051570.1 (TPRXL protein [Cucumis melo var. makuwa] >TYK21253.1 TPRXL protein [Cucumis melo var. makuwa])

HSP 1 Score: 229.2 bits (583), Expect = 2.5e-56
Identity = 121/149 (81.21%), Postives = 131/149 (87.92%), Query Frame = 0


Query: 1   MENKK-QVAASSSSSLDHLFGPMDSNSASSTSTTGYFGSIFPPLVVERERKQDVGNQVST 60
           ME+KK QVA SSSSSLDH+FGPMDSNSASSTSTTGYFGS+FPP VVERERK+DVGNQVST
Sbjct: 1   MESKKLQVATSSSSSLDHIFGPMDSNSASSTSTTGYFGSMFPPPVVERERKKDVGNQVST 60

Query: 61  GKVEISDNACINGKNGTGGATGKDANSMYENECMEPSYFSSSIFYGGQENYSPRTKASEA 120
            +V   DNA INGK GTG A+GKD +SMY+NE MEPSYFSSSIFYGGQENYSPRT AS++
Sbjct: 61  AEVGNPDNATINGKKGTGDASGKDESSMYQNETMEPSYFSSSIFYGGQENYSPRTNASQS 120

Query: 121 HHHNFKKEGKDNDVNGSNSNSASRGNWWK 149
            H NFKKEGKDND N SNSN ASRGNWWK
Sbjct: 121 -HPNFKKEGKDNDANESNSNPASRGNWWK 148

[Close]

BLAST of Lag0040838 vs. NCBI nr
Match: XP_008464894.1 (PREDICTED: uncharacterized protein LOC103502653 [Cucumis melo] >XP_016903275.1 PREDICTED: uncharacterized protein LOC103502653 [Cucumis melo] >XP_016903276.1 PREDICTED: uncharacterized protein LOC103502653 [Cucumis melo] >XP_016903277.1 PREDICTED: uncharacterized protein LOC103502653 [Cucumis melo] >XP_016903278.1 PREDICTED: uncharacterized protein LOC103502653 [Cucumis melo])

HSP 1 Score: 229.2 bits (583), Expect = 2.5e-56
Identity = 121/149 (81.21%), Postives = 131/149 (87.92%), Query Frame = 0


Query: 1   MENKK-QVAASSSSSLDHLFGPMDSNSASSTSTTGYFGSIFPPLVVERERKQDVGNQVST 60
           ME+KK QVA SSSSSLDH+FGPMDSNSASSTSTTGYFGS+FPP VVERERK+DVGNQVST
Sbjct: 1   MESKKLQVATSSSSSLDHIFGPMDSNSASSTSTTGYFGSMFPPPVVERERKKDVGNQVST 60

Query: 61  GKVEISDNACINGKNGTGGATGKDANSMYENECMEPSYFSSSIFYGGQENYSPRTKASEA 120
            +V   DNA INGK GTG A+GKD +SMY+NE MEPSYFSSSIFYGGQENYSPRT AS++
Sbjct: 61  AEVGNPDNATINGKKGTGDASGKDESSMYQNETMEPSYFSSSIFYGGQENYSPRTNASQS 120

Query: 121 HHHNFKKEGKDNDVNGSNSNSASRGNWWK 149
            H NFKKEGKDND N SNSN ASRGNWWK
Sbjct: 121 -HPNFKKEGKDNDANESNSNPASRGNWWK 148

The following BLAST results are available for this feature:

BLAST of Lag0040838 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139159.1	9.3e-59	83.11	uncharacterized protein LOC111010132 [Momordica charantia]	[more]
XP_038892196.1	8.7e-57	80.54	uncharacterized protein LOC120081420 isoform X2 [Benincasa hispida]	[more]
XP_038892195.1	8.7e-57	80.54	uncharacterized protein LOC120081420 isoform X1 [Benincasa hispida]	[more]
KAA0051570.1	2.5e-56	81.21	TPRXL protein [Cucumis melo var. makuwa] >TYK21253.1 TPRXL protein [Cucumis melo...	[more]
XP_008464894.1	2.5e-56	81.21	PREDICTED: uncharacterized protein LOC103502653 [Cucumis melo] >XP_016903275.1 P...	[more]

BLAST of Lag0040838 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	PANTHER	PTHR33738:SF21	PLANT/PROTEIN-RELATED	coord: 1..149
None	No IPR available	PANTHER	PTHR33738	EMB\|CAB82975.1	coord: 1..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040838.1	Lag0040838.1	mRNA