Lag0040829 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0040829
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr13: 8731832 .. 8732380 (+)
RNA-Seq ExpressionLag0040829
SyntenyLag0040829
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTTGTAGAGCCAAGAAACTTCGATGGGAAAAATTTTGAGTGTTGGAAAATGCAAGTCAATGATTACCTAACTTGCAAGAAAATACATAAGGCATTGAAGGAGAGACCGAAAGGGATGACGAACGAAGATTGGGAAGCTTTGGATGAAGAGGCAGTTGCAAGCATAAGGATGTGTTTGTCAATGGACGTGGCAAGTCTAGTGGCCCATGAGACAACTGCAGTTAAATTGATGGAAGCGCTTACAAATAGGTATGAAAAACCCTCGGCTAATAATAAGGTCTACCTAGTTAAGAAGTTTTTCAACATGCAAATGTCTGAGGATGCTTCTGTGAATTCCTATATTAATGAGGTTACCACTTTGTTTAATCGGTTAAAATCTGTTAAGATAGAATTTATTGATGAGGTGAATGCTATTCAGTTGTTAACGTCTTTACCTGATAGTTGGGAAACGATGAAGACAACATTGTCTAATTCGACTGGAAATAATACTTTAAAATTTTTAAAAGTTTGTGATTTAGCCATAGCTGAGGAAATTCGTAGGTAG

mRNA sequence

ATGGGTTTTGTAGAGCCAAGAAACTTCGATGGGAAAAATTTTGAGTGTTGGAAAATGCAAGTCAATGATTACCTAACTTGCAAGAAAATACATAAGGCATTGAAGGAGAGACCGAAAGGGATGACGAACGAAGATTGGGAAGCTTTGGATGAAGAGGCAGTTGCAAGCATAAGGATGTGTTTGTCAATGGACGTGGCAAGTCTAGTGGCCCATGAGACAACTGCAGTTAAATTGATGGAAGCGCTTACAAATAGGTATGAAAAACCCTCGGCTAATAATAAGGTCTACCTAGTTAAGAAGTTTTTCAACATGCAAATGTCTGAGGATGCTTCTGTGAATTCCTATATTAATGAGGTTACCACTTTGTTTAATCGGTTAAAATCTGTTAAGATAGAATTTATTGATGAGGTGAATGCTATTCAGTTGTTAACGTCTTTACCTGATAGTTGGGAAACGATGAAGACAACATTGTCTAATTCGACTGGAAATAATACTTTAAAATTTTTAAAAGTTTGTGATTTAGCCATAGCTGAGGAAATTCGTAGGTAG

Coding sequence (CDS)

ATGGGTTTTGTAGAGCCAAGAAACTTCGATGGGAAAAATTTTGAGTGTTGGAAAATGCAAGTCAATGATTACCTAACTTGCAAGAAAATACATAAGGCATTGAAGGAGAGACCGAAAGGGATGACGAACGAAGATTGGGAAGCTTTGGATGAAGAGGCAGTTGCAAGCATAAGGATGTGTTTGTCAATGGACGTGGCAAGTCTAGTGGCCCATGAGACAACTGCAGTTAAATTGATGGAAGCGCTTACAAATAGGTATGAAAAACCCTCGGCTAATAATAAGGTCTACCTAGTTAAGAAGTTTTTCAACATGCAAATGTCTGAGGATGCTTCTGTGAATTCCTATATTAATGAGGTTACCACTTTGTTTAATCGGTTAAAATCTGTTAAGATAGAATTTATTGATGAGGTGAATGCTATTCAGTTGTTAACGTCTTTACCTGATAGTTGGGAAACGATGAAGACAACATTGTCTAATTCGACTGGAAATAATACTTTAAAATTTTTAAAAGTTTGTGATTTAGCCATAGCTGAGGAAATTCGTAGGTAG

Protein sequence

MGFVEPRNFDGKNFECWKMQVNDYLTCKKIHKALKERPKGMTNEDWEALDEEAVASIRMCLSMDVASLVAHETTAVKLMEALTNRYEKPSANNKVYLVKKFFNMQMSEDASVNSYINEVTTLFNRLKSVKIEFIDEVNAIQLLTSLPDSWETMKTTLSNSTGNNTLKFLKVCDLAIAEEIRR
Homology
BLAST of Lag0040829 vs. NCBI nr
Match: KAE8691144.1 (hypothetical protein F3Y22_tig00110893pilonHSYRG01319 [Hibiscus syriacus])

HSP 1 Score: 176.8 bits (447), Expect = 1.7e-40
Identity = 92/182 (50.55%), Postives = 130/182 (71.43%), Query Frame = 0

Query: 2   GFVEPRNFDGKNFECWKMQVNDYLTCKKIHKALK-ERPKGMTNEDWEALDEEAVASIRMC 61
           G V+   FDG NF  WKMQ+ D+L  K +++ L  ++P+GM NEDW  LD +A+  IR+ 
Sbjct: 6   GKVKIEKFDGANFGFWKMQIEDFLYQKNLYQPLSGKQPEGMKNEDWVLLDRQALGVIRLT 65

Query: 62  LSMDVASLVAHETTAVKLMEALTNRYEKPSANNKVYLVKKFFNMQMSEDASVNSYINEVT 121
           LS +VA  +A E T   LM AL++ YEKPSA+NKV+L+++ FN++M+E ASV  ++NE+ 
Sbjct: 66  LSCNVAFNIAKEKTTAGLMAALSSMYEKPSASNKVHLMRRLFNLRMAEVASVAQHLNELN 125

Query: 122 TLFNRLKSVKIEFIDEVNAIQLLTSLPDSWETMKTTLSNSTGNNTLKFLKVCDLAIAEEI 181
           T+  +L SV+IEF DEV A+ LL+SLPDSW    T +S+S+GN+ LKF  V DL ++EEI
Sbjct: 126 TITTQLSSVEIEFDDEVRALILLSSLPDSWNATATAVSSSSGNSKLKFDDVRDLVLSEEI 185

Query: 182 RR 183
           RR
Sbjct: 186 RR 187

BLAST of Lag0040829 vs. NCBI nr
Match: KAG7593230.1 (Pentatricopeptide repeat [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 176.4 bits (446), Expect = 2.2e-40
Identity = 87/174 (50.00%), Postives = 121/174 (69.54%), Query Frame = 0

Query: 9   FDGKNFECWKMQVNDYLTCKKIHKALKERPKGMTNEDWEALDEEAVASIRMCLSMDVASL 68
           FDG +F  W+MQ+ DYL  KK+H+ L  +P+ M  E+W+ LD + +  IR+ LS +VA  
Sbjct: 14  FDGTDFAFWRMQIEDYLYGKKLHQPLSMKPEKMAQEEWDLLDRQVLGVIRLTLSKNVAHN 73

Query: 69  VAHETTAVKLMEALTNRYEKPSANNKVYLVKKFFNMQMSEDASVNSYINEVTTLFNRLKS 128
           VA E T   LM+ L++ YEKPSANNKV+L+KK F+++M E   V +++NE  T+ N+L S
Sbjct: 74  VAKEKTTEGLMKVLSDMYEKPSANNKVFLMKKLFHLKMEEGGPVATHVNEFNTIVNQLSS 133

Query: 129 VKIEFIDEVNAIQLLTSLPDSWETMKTTLSNSTGNNTLKFLKVCDLAIAEEIRR 183
           V+IEF DEV A+ LL SLP+SWE M+  +SNS GN  LKF+ V D  + EE+RR
Sbjct: 134 VEIEFDDEVRALILLASLPNSWEPMRAAVSNSVGNQKLKFVDVRDRILGEEVRR 187

BLAST of Lag0040829 vs. NCBI nr
Match: KAG7584790.1 (Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 176.4 bits (446), Expect = 2.2e-40
Identity = 87/174 (50.00%), Postives = 121/174 (69.54%), Query Frame = 0

Query: 9   FDGKNFECWKMQVNDYLTCKKIHKALKERPKGMTNEDWEALDEEAVASIRMCLSMDVASL 68
           FDG +F  W+MQ+ DYL  KK+H+ L  +P+ M  E+W+ LD + +  IR+ LS +VA  
Sbjct: 14  FDGTDFAFWRMQIEDYLYGKKLHQPLSMKPEKMAQEEWDLLDRQVLGVIRLTLSKNVAHN 73

Query: 69  VAHETTAVKLMEALTNRYEKPSANNKVYLVKKFFNMQMSEDASVNSYINEVTTLFNRLKS 128
           VA E T   LM+ L++ YEKPSANNKV+L+KK F+++M E   V +++NE  T+ N+L S
Sbjct: 74  VAKEKTTEGLMKVLSDMYEKPSANNKVFLMKKLFHLKMEEGGPVATHVNEFNTIVNQLSS 133

Query: 129 VKIEFIDEVNAIQLLTSLPDSWETMKTTLSNSTGNNTLKFLKVCDLAIAEEIRR 183
           V+IEF DEV A+ LL SLP+SWE M+  +SNS GN  LKF+ V D  + EE+RR
Sbjct: 134 VEIEFDDEVRALILLASLPNSWEPMRAAVSNSVGNQKLKFVDVRDRILGEEVRR 187

BLAST of Lag0040829 vs. NCBI nr
Match: TKR90717.1 (hypothetical protein D5086_0000230290 [Populus alba])

HSP 1 Score: 176.4 bits (446), Expect = 2.2e-40
Identity = 91/175 (52.00%), Postives = 120/175 (68.57%), Query Frame = 0

Query: 9   FDGKNFECWKMQVNDYLTCKKIH-KALKERPKGMTNEDWEALDEEAVASIRMCLSMDVAS 68
           FDG NF  WKMQ+ DYL  KK+H   L  +P+ M  E+W+ LD + +  IR+ LS  VA 
Sbjct: 13  FDGTNFGYWKMQIEDYLYGKKLHLPLLGSKPEKMEEEEWQLLDRQVLGIIRLSLSRRVAH 72

Query: 69  LVAHETTAVKLMEALTNRYEKPSANNKVYLVKKFFNMQMSEDASVNSYINEVTTLFNRLK 128
            V  E +  KLMEAL+  YEKPSANNKV+L+KK FN++M E+ASV  ++N   T+ N+L 
Sbjct: 73  NVTKEKSTAKLMEALSGMYEKPSANNKVHLMKKLFNLKMVENASVTQHLNNFNTITNQLS 132

Query: 129 SVKIEFIDEVNAIQLLTSLPDSWETMKTTLSNSTGNNTLKFLKVCDLAIAEEIRR 183
           SV IEF DE+ A+ LL SLP SWE M+T +SNS G + LK+  + DL +AEE+RR
Sbjct: 133 SVAIEFNDEIRALILLASLPSSWEGMRTAVSNSAGKSKLKYDDIRDLILAEEVRR 187

BLAST of Lag0040829 vs. NCBI nr
Match: KAE8678064.1 (Glycosyltransferase, CAZy family GT8 [Hibiscus syriacus])

HSP 1 Score: 176.4 bits (446), Expect = 2.2e-40
Identity = 91/182 (50.00%), Postives = 130/182 (71.43%), Query Frame = 0

Query: 2   GFVEPRNFDGKNFECWKMQVNDYLTCKKIHKALK-ERPKGMTNEDWEALDEEAVASIRMC 61
           G V+   FDG +F  WKMQ+ D+L  K +++ L  ++P+GM NEDW  LD +A+  IR+ 
Sbjct: 122 GKVKIEKFDGADFGFWKMQIEDFLYQKNLYQPLSGKQPEGMKNEDWALLDRQALGVIRLT 181

Query: 62  LSMDVASLVAHETTAVKLMEALTNRYEKPSANNKVYLVKKFFNMQMSEDASVNSYINEVT 121
           LS +VA  +A E T   LM AL++ YEKPSA+NKV+L+++ FN++M+E ASV  ++NE+ 
Sbjct: 182 LSRNVAFNIAKEKTTAGLMAALSSMYEKPSASNKVHLIRRLFNLRMTEGASVAQHLNELN 241

Query: 122 TLFNRLKSVKIEFIDEVNAIQLLTSLPDSWETMKTTLSNSTGNNTLKFLKVCDLAIAEEI 181
           T+  +L SV+IEF DEV A+ LL+SLPDSW    T +S+S+GN+ LKF  V DL ++EEI
Sbjct: 242 TITTQLSSVEIEFDDEVRALILLSSLPDSWNATVTAVSSSSGNSKLKFDDVRDLVLSEEI 301

Query: 182 RR 183
           RR
Sbjct: 302 RR 303

BLAST of Lag0040829 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.5e-18
Identity = 59/182 (32.42%), Postives = 96/182 (52.75%), Query Frame = 0

Query: 5   EPRNFDGKN-FECWKMQVNDYLTCKKIHKAL---KERPKGMTNEDWEALDEEAVASIRMC 64
           E   F+G N F  W+ ++ D L  + +HK L    ++P  M  EDW  LDE A ++IR+ 
Sbjct: 7   EVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIRLH 66

Query: 65  LSMDVASLVAHETTAVKLMEALTNRYEKPSANNKVYLVKKFFNMQMSEDASVNSYINEVT 124
           LS DV + +  E TA  +   L + Y   +  NK+YL K+ + + MSE  +  S++N   
Sbjct: 67  LSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFN 126

Query: 125 TLFNRLKSVKIEFIDEVNAIQLLTSLPDSWETMKTTLSNSTGNNTLKFLKVCDLAIAEEI 183
            L  +L ++ ++  +E  AI LL SLP S++ + TT+ +  G  T++   V    +  E 
Sbjct: 127 GLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILH--GKTTIELKDVTSALLLNEK 186

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8691144.11.7e-4050.55hypothetical protein F3Y22_tig00110893pilonHSYRG01319 [Hibiscus syriacus][more]
KAG7593230.12.2e-4050.00Pentatricopeptide repeat [Arabidopsis thaliana x Arabidopsis arenosa][more]
KAG7584790.12.2e-4050.00Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa][more]
TKR90717.12.2e-4052.00hypothetical protein D5086_0000230290 [Populus alba][more]
KAE8678064.12.2e-4050.00Glycosyltransferase, CAZy family GT8 [Hibiscus syriacus][more]
Match NameE-valueIdentityDescription
P109785.5e-1832.42Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 46..170
e-value: 1.6E-26
score: 92.7
NoneNo IPR availablePANTHERPTHR34676:SF1ZINC FINGER, CCHC-TYPE, TUBBY C-TERMINAL-LIKE DOMAIN PROTEIN-RELATEDcoord: 9..182
NoneNo IPR availablePANTHERPTHR34676FAMILY NOT NAMEDcoord: 9..182

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0040829.1Lag0040829.1mRNA