Lag0040824 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040824
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr13: 8706729 .. 8711207 (-)
RNA-Seq Expression	Lag0040824
Synteny	Lag0040824

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCGAGAGAGATAAGTCTTAAATCCCTAAAACCATTTCATCTTCCTCATTCGATTGACAGCAGAAGAGCAACCCCCCCTCGCGCCATCGTCGCTTTCCCTGCGTTGTTGTCTCCCCGCCGATTACGGTCGTCTCGCTCCGCCTCCGGTCGTTGCCCCTCCGACTCCAGCCATCTCCCTTCGCCTCCTACCGTCTCCCTCTGCATCTGGCCTTCTCCCCGCCGCCTCATCCTTCGATTTCTTGAAGGTAAAATATAAAGAAAACTTTGATTTTCTCTCCTCTATCTCTTATTTAAGTGTGTGTTTGTGCCTCCGTCTTTGACTTCGTTGATTTCGATTCTAAGTTCCGCCTCTTTAGAAGTCGTTGCCCAAATATATGTGTTAAACAAATATTTCTTTTATCATTGGTGTATTGTTTACTGGAGGCTGTGCATTTCATTCATAGTCATTCTTTACAGTTTGGCCTATTATGTGAAATTTAACGTGTACTAGTAATACATCATCTCTTTCTCTGACTCTTTCCTGGTTTCCAAATCACCCATTCACGTTGCTCTGTGATGTGTATAAGAATGTTGTGACATGGTTGCTCTGCTTAGAATGATATTATGCCTATGAAAATGAATACAAGTTTTCTTGTTTTGAAACTTTAACCTATCAGAGACTAGCAATTAGAGGCCATTGTTGAGTTTGAAGCCTAGATAATTGGGAGAAAATCAAAAGTAGTATATTTCATTAAGTGTGCCTTCCATCATTCATTTCATTAAGGAGCTTGGCAGTGGGCAGAACAAGGGAAGGACAGAGTAGAAATATGACAAATTTGTTTTCTTGAGCAACTTTGAGTTTGTTAATACCCTTTTCCAAATACCACACCTTACTGATATGATTTTGGATTTATCAGCTTTGTTCCACTTCCATCATTCATTCATTAATTCTCATCTATTAATAGCTTATAACATATTCTTAGTATTCTTATATTACTTTGATTTCTAATAATGTCCTGCTCCTTGTACTTCTTTTTTTTTTTTTTTTTTTGTAACAAATTATTTTTGGATTTTAAGGATTGTGATGGTTGAGGAGGTTTTCATGGTAAAAAGTGGGGGATACCTAGGGGAAATTTGTTATTAAAATGTTTACAAATATGTATTTTTTAAAAAGAGTAGTTATAAATGTAATGAGCTAGACGAATAAAAGATGGAGCTATTATGGCAAGGACGACTAGTGATATGGTCCAAATATGGTTTAAGCAAAGTAATAAGAAACGTATGGCTTGCTTGAAACATATAAATCATGAAAATTGGTTGGAGGAAAAGTAGAAGTAACAGATAATATGGTTGTTCACTGTTATGTAAAATGACTATGAGTTTTTATGTCATAACCTCCTTGATGGTCAATGAGCAACTTTGAGTTTGTTTCAAAGAAGTTGGAGGAAAGGATGAGACAGTTTGCAATTTGATGAGGAGAGCATAAAAATGGATGTCAATATGTAGAGCATGTAGCCTTCCAAAGAGGGATTGAAGCCATAAATTCATTAGGTACATGAGAAACGATTTTAAGCTCATTTTCAACACTTTTAGAACCTTTTTTAAACACTTAAAAAGTTATTCTAAACAGGTTCTTAAATATCAATTGTCAAGACAAGTTTGCATTCAAGATAGATAAGTCATTTTTGTTGATAAAAACACTTTATCTATGTACTTTTTTTTTTTCATTTAAGTAGTGATTTAATCTCTAAATTTAAGTCACTAATAATTTAGTCATGGCCAATTAGGTCCCGTTTGATAAAATTTTTTCTTCTCATGTTTGGATTCTGCTTTTTTTAGTCTTAAGAGAACACTCCCATATAAAGGAGTTTGTCAATCTCAAGTATTTTTCTTGCCCCTAATATTTTACAAACTTTTAAATGGTATCTTCACCATTTAAATTCACATTGTACATGACTACTAAGGTTTTCCTTCCAATTATCTTAATGTACTATGATTTAACCAATATGTAGAGTTGTTAATACGAGACCTGGCTTGTATGTTGATTGTTGTGGAGTTCTGTTAAATTGAAGTATGGGGGAGTTAATTGAAATATTATAGGAGTGTTATTTTTATGTTTGTAGGTGTTTTAAAAGTTTTGGGTTAGCCATATGTATGTCGTTATGCTGCCGAAATTTCTGGATAGTTGTTAATACTTATTTACATGTTTAGCATGGAACCTATTCGAAGTTTTCATTGATATGAGTCTAGATGAATAAGAATTTTTTTTTCATATTTGGTCAAATGCAACTAGATGAGCATGATTCTTTCTAAAGGAAAAACTAGGAAGGTTGTTGGGTGGTTTTGTGTTGTAGTTAAGGTATGTTGTGTGTGTTTCTCTTGTAAGAAGTTGTTCTATTCCTCTTTTTGTTTTCAAAACCACTTTGTTTACTTGAATCCTGAATTTCCATCACCAGGTGTTCGGGGAGGATCACAAGGCACTTCACATTGTCCAGAAGCACGTGAGTTCAAGTTGATTTTCTCAATGGTGTATGTTGGTGGGGCTGAGGAAGTTTTTTTTAATCTTTAGTTGTCTTTAGGTTGTTTTTTTGTTTCCGATCACATGACTTTAAGTTGATTTTATCAATGGTGTATGTTGGTGTATGTTATTTTTCTGAAGTTCATTTTTTGTCTCTCTTTCTGGATATTGATGTATAAAGCAGTTTTAGATAATGACACTAGTCGAATTATATATACACGGTTTTGTGAAACGAAACCCACACAATTTGTCTACTTCTTTCGGCTATTATTGAATTGACAATTTCTCTTTAGGGTTAAGAATAAAAAAAGAAGTTTAATGATGATAAATATAATGGGAATGGAACAAAAAAGATTATCTAATACAATTAGTAAAAAAATAAAAAATAAAAACATGTTCTGCCGACGCCATACACGTGGCGTCGGTAGAAAGGGGTTCTGCCGACGCCGTCTACATGGCGTCGGCAGAAATTGGCCAATTTGCTCCCACGCACTGTTCTCTCGACGCAGTTTTACGGCGTCGAGAAAAACTATTTCTGCCGACGGGGTTCTTCCGACTATCTTCCCGACGCATCAAACGGCGTCGGGAGAACTTATGTCGACGCCGAATGGGACTTCTGCCGACGTCGACCCGCGTCGGGAAAGGGTAAATTTTTTGTAGTGAACGGGTATCAACGTGGAGGATTCCAGAGTTGCTCAAATTGCCACCAATTGGGGATGCCCAATGGCCCAATTCCCCATTCCTTATTTAGGCTCTCCCCTGGGGGGGTAATCTGTCATCGTCTCCTTTTTGGGCTAATACGATTGATAAGATTCATAGTAAATTGGATAGTTGGCGCTATTCCTATATTTCGAAGGGAGGAAGATTAACTTTGATTAAAGCGACCTTAAGTGGCATTCCCAACCACTTGTTATCTATCTTTAAAGCTCCGCAATCGGTTTGCTTTAGTATAGATAAGATTATCAGATCTTTTCTTTGGCATGGGCAAGATCAAAGTAGTAGCATCCCTTTGGTTAATTGGGGCATGGTGGCTGCGCCTATTGAGGCTGGGGGTTTGGGCTTATTCAAGACTAGAATTACAAATAGCGCACTTCAAGTCAAATGGCTTTGGAGATTCTTTCATGAGGAGACTTCTCTGTGGAAGCGAGTCATTTCAGCAAAATATACAACCTCTCTTTTTCTGGCAACTCTTCCAACTCAGGCGCGATTCACTTCCTCCCAAGCGCCATGGACATCAATTCTCAAGCAAGCCTCTCTTTTCTGGCAAATACAGTATGGAATCTTAAGGATGGCAGTAAAATCTCTTTTTGGCATGACTCTTGGACCGATCATGGGCCATTATATCAAGCCCTTCCTCGCCTTTTCGCGTTGTCTAGTAGGAAAAATATGACTGTCTCGGATGCTTGGGACCACACCACTTCATCGTGGAAGCTTTATCCTAGACGCCCTTTGTTTGACAGGGAGGTCTTTGTTCAGGCGGAATGTGCTTCCTCCTTCCCAACTCCTGCATTATCCGGAGGGGCGGACCACATGCTTTGGAGCCCGGACTCCAAGAGACGCTTCTTCGTTGCTTCAGCTAGGCATTTCTATTGGAATCTGTCATCGCCAGATCGGCCACAACCTCATTCCATTATTTTCTTAAATCTATGGAAGGCTCTGATTCCAAAAAAGATCAAATTCTTTATTTGGACGGTTATTTACAGAAGATTAAATACAACAGACAGGCTTCAACATATTTTCAAATCCACTGCTCTAAATCCGAGCTGTTGCCCCCTTTGCCATGCAGGCTCAGATGAGTTGGATCATATTTTTATCCATTGTGGGGTTGCTTCAGATATTTGGCTCTCTTTTCATCTAGCTACTGGTATTAATATGTCAATTCCTAGCCAGGTGAATTGGATTTGTTTAGAGTCCTTCGCAGTCAAGGCTACTTCGCAGAGGGAAATACTTATTCAGTCCATGACGGCAGCAATTTAA

mRNA sequence

ATGGCGTCGAGAGAGATAAGTCTTAAATCCCTAAAACCATTTCATCTTCCTCATTCGATTGACAGCAGAAGAGCAACCCCCCCTCGCGCCATCGTCGCTTTCCCTGCGTTGTTGTCTCCCCGCCGATTACGGTCGTCTCGCTCCGCCTCCGGTCGTTGCCCCTCCGACTCCAGCCATCTCCCTTCGCCTCCTACCGTCTCCCTCTGCATCTGGCCTTCTCCCCGCCGCCTCATCCTTCGATTTCTTGAAGGTGTTCGGGGAGGATCACAAGGCACTTCACATTGTCCAGAAGCACGTGAGTTCAAGTTGATTTTCTCAATGGTGTATGTTGGTGGGGCTGAGGAAAAAGGGGTTCTGCCGACGCCGTCTACATGGCGTCGGCAGAAATTGGCCAATTTGCTCCCACGCACTGTTCTCTCGACGCAGTTTTACGGCGTCGAGAAAAACTATTTCTGCCGACGGGGTTCTTCCGACTATCTTCCCGACGCATCAAACGGCGTCGGGAGAACTTATGTCGACGCCGAATGGGACTTCTGCCGACGTCGACCCGCGTCGGGAAAGGGCGCGATTCACTTCCTCCCAAGCGCCATGGACATCAATTCTCAAGCAAGCCTCTCTTTTCTGGCAAATACAGTATGGAATCTTAAGGATGGCAGTAAAATCTCTTTTTGGCATGACTCTTGGACCGATCATGGGCCATTATATCAAGCCCTTCCTCGCCTTTTCGCGTTGTCTAGTAGGAAAAATATGACTGTCTCGGATGCTTGGGACCACACCACTTCATCGTGGAAGCTTTATCCTAGACGCCCTTTGTTTGACAGGGAGGTCTTTGTTCAGGCGGAATGTGCTTCCTCCTTCCCAACTCCTGCATTATCCGGAGGGGCGGACCACATGCTTTGGAGCCCGGACTCCAAGAGACGCTTCTTCGTTGCTTCAGCTAGGCATTTCTATTGGAATCTGTCATCGCCAGATCGGCCACAACCTCATTCCATTATTTTCTTAAATCTATGGAAGGCTCTGATTCCAAAAAAGATCAAATTCTTTATTTGGACGGTTATTTACAGAAGATTAAATACAACAGACAGGCTTCAACATATTTTCAAATCCACTGCTCTAAATCCGAGCTGTTGCCCCCTTTGCCATGCAGGCTCAGATGAGTTGGATCATATTTTTATCCATTGTGGGGTTGCTTCAGATATTTGGCTCTCTTTTCATCTAGCTACTGGTATTAATATGTCAATTCCTAGCCAGGTGAATTGGATTTGTTTAGAGTCCTTCGCAGTCAAGGCTACTTCGCAGAGGGAAATACTTATTCAGTCCATGACGGCAGCAATTTAA

Coding sequence (CDS)

ATGGCGTCGAGAGAGATAAGTCTTAAATCCCTAAAACCATTTCATCTTCCTCATTCGATTGACAGCAGAAGAGCAACCCCCCCTCGCGCCATCGTCGCTTTCCCTGCGTTGTTGTCTCCCCGCCGATTACGGTCGTCTCGCTCCGCCTCCGGTCGTTGCCCCTCCGACTCCAGCCATCTCCCTTCGCCTCCTACCGTCTCCCTCTGCATCTGGCCTTCTCCCCGCCGCCTCATCCTTCGATTTCTTGAAGGTGTTCGGGGAGGATCACAAGGCACTTCACATTGTCCAGAAGCACGTGAGTTCAAGTTGATTTTCTCAATGGTGTATGTTGGTGGGGCTGAGGAAAAAGGGGTTCTGCCGACGCCGTCTACATGGCGTCGGCAGAAATTGGCCAATTTGCTCCCACGCACTGTTCTCTCGACGCAGTTTTACGGCGTCGAGAAAAACTATTTCTGCCGACGGGGTTCTTCCGACTATCTTCCCGACGCATCAAACGGCGTCGGGAGAACTTATGTCGACGCCGAATGGGACTTCTGCCGACGTCGACCCGCGTCGGGAAAGGGCGCGATTCACTTCCTCCCAAGCGCCATGGACATCAATTCTCAAGCAAGCCTCTCTTTTCTGGCAAATACAGTATGGAATCTTAAGGATGGCAGTAAAATCTCTTTTTGGCATGACTCTTGGACCGATCATGGGCCATTATATCAAGCCCTTCCTCGCCTTTTCGCGTTGTCTAGTAGGAAAAATATGACTGTCTCGGATGCTTGGGACCACACCACTTCATCGTGGAAGCTTTATCCTAGACGCCCTTTGTTTGACAGGGAGGTCTTTGTTCAGGCGGAATGTGCTTCCTCCTTCCCAACTCCTGCATTATCCGGAGGGGCGGACCACATGCTTTGGAGCCCGGACTCCAAGAGACGCTTCTTCGTTGCTTCAGCTAGGCATTTCTATTGGAATCTGTCATCGCCAGATCGGCCACAACCTCATTCCATTATTTTCTTAAATCTATGGAAGGCTCTGATTCCAAAAAAGATCAAATTCTTTATTTGGACGGTTATTTACAGAAGATTAAATACAACAGACAGGCTTCAACATATTTTCAAATCCACTGCTCTAAATCCGAGCTGTTGCCCCCTTTGCCATGCAGGCTCAGATGAGTTGGATCATATTTTTATCCATTGTGGGGTTGCTTCAGATATTTGGCTCTCTTTTCATCTAGCTACTGGTATTAATATGTCAATTCCTAGCCAGGTGAATTGGATTTGTTTAGAGTCCTTCGCAGTCAAGGCTACTTCGCAGAGGGAAATACTTATTCAGTCCATGACGGCAGCAATTTAA

Protein sequence

MASREISLKSLKPFHLPHSIDSRRATPPRAIVAFPALLSPRRLRSSRSASGRCPSDSSHLPSPPTVSLCIWPSPRRLILRFLEGVRGGSQGTSHCPEAREFKLIFSMVYVGGAEEKGVLPTPSTWRRQKLANLLPRTVLSTQFYGVEKNYFCRRGSSDYLPDASNGVGRTYVDAEWDFCRRRPASGKGAIHFLPSAMDINSQASLSFLANTVWNLKDGSKISFWHDSWTDHGPLYQALPRLFALSSRKNMTVSDAWDHTTSSWKLYPRRPLFDREVFVQAECASSFPTPALSGGADHMLWSPDSKRRFFVASARHFYWNLSSPDRPQPHSIIFLNLWKALIPKKIKFFIWTVIYRRLNTTDRLQHIFKSTALNPSCCPLCHAGSDELDHIFIHCGVASDIWLSFHLATGINMSIPSQVNWICLESFAVKATSQREILIQSMTAAI

Homology

[Close]

BLAST of Lag0040824 vs. NCBI nr
Match: KAA0037436.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 166.8 bits (421), Expect = 4.3e-37
Identity = 82/234 (35.04%), Postives = 130/234 (55.56%), Query Frame = 0


Query: 207 FLANTVWNLKDGSKISFWHDSWTDHGPLYQALPRLFALSSRKNMTVSDAWDHTTSSWKLY 266
           F  ++ W +KDG  +SFWH +W   G L    PRL+ LS  +N T+ + WD  T+ W L+
Sbjct: 564 FQNHSSWEIKDGENLSFWHSNWIASGSLSNTYPRLYTLSKAQNATIEELWDPNTNDWNLH 623

Query: 267 PRRPLFDREVFVQAECASSFPTPALSGGADHMLWSPDSKRRFFVASARHFYWNLSSPDRP 326
           PRRPL DRE+ +            L+GG ++M+W+P+ K  +  ASA+     L S +RP
Sbjct: 624 PRRPLNDREIELWTNLKGILKILTLNGGKNNMIWTPNDKGTYTAASAKR---QLLS-ERP 683

Query: 327 QPH---SIIFLNLWKALIPKKIKFFIWTVIYRRLNTTDRLQHIFKSTALNPSCCPLCHAG 386
            P+      +  LWK+ +PKK KFF+W++ +  +NTTD LQ    +T L PS C L  + 
Sbjct: 684 TPNLNERNFYETLWKSKLPKKGKFFMWSLFHESINTTDVLQKRLPNTYLQPSRCFLYKSD 743

Query: 387 SDELDHIFIHCGVASDIWLSFHLATGINMSIPSQVNWICLESFAVKATSQREIL 438
           ++ ++HIFI C +   +W       G+N  I S +N + +    +K  S++ ++
Sbjct: 744 AEGINHIFISCHLTKTLWDKLSRQIGVNFDIRS-INTVSILVGEMKQISRKNVI 792

[Close]

BLAST of Lag0040824 vs. NCBI nr
Match: TYK00226.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 166.8 bits (421), Expect = 4.3e-37
Identity = 82/234 (35.04%), Postives = 130/234 (55.56%), Query Frame = 0


Query: 207 FLANTVWNLKDGSKISFWHDSWTDHGPLYQALPRLFALSSRKNMTVSDAWDHTTSSWKLY 266
           F  ++ W +KDG  +SFWH +W   G L    PRL+ LS  +N T+ + WD  T+ W L+
Sbjct: 539 FQNHSSWEIKDGENLSFWHSNWIASGSLSNTYPRLYTLSKAQNATIEELWDPNTNDWNLH 598

Query: 267 PRRPLFDREVFVQAECASSFPTPALSGGADHMLWSPDSKRRFFVASARHFYWNLSSPDRP 326
           PRRPL DRE+ +            L+GG ++M+W+P+ K  +  ASA+     L S +RP
Sbjct: 599 PRRPLNDREIELWTNLKGILKILTLNGGKNNMIWTPNDKGTYTAASAKR---QLLS-ERP 658

Query: 327 QPH---SIIFLNLWKALIPKKIKFFIWTVIYRRLNTTDRLQHIFKSTALNPSCCPLCHAG 386
            P+      +  LWK+ +PKK KFF+W++ +  +NTTD LQ    +T L PS C L  + 
Sbjct: 659 TPNLNERNFYETLWKSKLPKKGKFFMWSLFHESINTTDVLQKRLPNTYLQPSRCFLYKSD 718

Query: 387 SDELDHIFIHCGVASDIWLSFHLATGINMSIPSQVNWICLESFAVKATSQREIL 438
           ++ ++HIFI C +   +W       G+N  I S +N + +    +K  S++ ++
Sbjct: 719 AEGINHIFISCHLTKTLWDKLSRQIGVNFDIRS-INTVSILVGEMKQISRKNVI 767

[Close]

BLAST of Lag0040824 vs. NCBI nr
Match: KAA0046762.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 162.2 bits (409), Expect = 1.1e-35
Identity = 78/207 (37.68%), Postives = 111/207 (53.62%), Query Frame = 0


Query: 207 FLANTVWNLKDGSKISFWHDSWTDHGPLYQALPRLFALSSRKNMTVSDAWDHTTSSWKLY 266
           F +N  W+L +G +ISFW+ +W+  G L  A PRLFALS  K++TV DAW+   + W + 
Sbjct: 765 FRSNQSWDLNNGDQISFWYSNWSIEGRLLTAYPRLFALSLDKDITVKDAWNTIDNQWTIR 824

Query: 267 PRRPLFDREVFVQAECASSFPTPALSGGADHMLWSPDSKRRFFVASARHFYWNLSSPDRP 326
            RR L DRE    A+     P P  + G+    W PDSK  F +ASA+            
Sbjct: 825 FRRELNDRERNKWAKILEILPKPRYNSGSSKPTWIPDSKNSFSIASAKFLISRQLDQSSG 884

Query: 327 QPHSIIFLNLWKALIPKKIKFFIWTVIYRRLNTTDRLQHIFKSTALNPSCCPLCHAGSDE 386
            P S +   +WK+ IP KIKFF+W +I R++NT + +QH   +  L PS C LC   S+ 
Sbjct: 885 DPQSKLLEIIWKSTIPMKIKFFMWCLIQRKINTMEVVQHRMPNICLQPSWCVLCKKDSES 944

Query: 387 LDHIFIHCGVASDIWLSFHLATGINMS 414
             H+F+HC     +W     A  + +S
Sbjct: 945 GTHLFLHCEAVKPLWSFLQNAFSLALS 971

[Close]

BLAST of Lag0040824 vs. NCBI nr
Match: KAA0056839.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ99342.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 158.3 bits (399), Expect = 1.5e-34
Identity = 75/212 (35.38%), Postives = 120/212 (56.60%), Query Frame = 0


Query: 213 WNLKDGSKISFWHDSWTDHGPLYQALPRLFALSSRKNMTVSDAWDHTTSSWKLYPRRPLF 272
           W   DGS +SFWH  W ++ PL    PRL+ALS+ ++ TV + WD  +  W + PRRPL 
Sbjct: 484 WMANDGSSLSFWHSKWHNNIPLSLQFPRLYALSNMQSATVKEIWDQGSDDWNMEPRRPLN 543

Query: 273 DREVFVQAECASSFPTPALSGGADHMLWSPDSKRRFFVASARHFYWNLSSPDRPQPHSII 332
           +RE         S P    + G     W+P   +++ VASA+   +  SS  +       
Sbjct: 544 EREQQTWDSIKMSLPRIHNNRGMCKPSWNPSDSKKYTVASAKDIAFKESSIPKETNWEKE 603

Query: 333 FLNLWKALIPKKIKFFIWTVIYRRLNTTDRLQHIFKSTALNPSCCPLCHAGSDELDHIFI 392
             +LW++ IP+K KFFIWT+++++LNT D++Q    S +LNPS C  C + +++++H+FI
Sbjct: 604 LKHLWRSHIPQKCKFFIWTMVHQKLNTMDKIQKRNPSMSLNPSWCISCRSSNEDMNHLFI 663

Query: 393 HCGVASDIWLSFHLATGINMSIPSQVNWICLE 425
            C  A ++W  +   TG  M+  + V  +CL+
Sbjct: 664 FCPFARNLWNMWSSETGTPMA-TTNVKDLCLQ 694

[Close]

BLAST of Lag0040824 vs. NCBI nr
Match: TYK08190.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 157.5 bits (397), Expect = 2.6e-34
Identity = 75/212 (35.38%), Postives = 119/212 (56.13%), Query Frame = 0


Query: 213  WNLKDGSKISFWHDSWTDHGPLYQALPRLFALSSRKNMTVSDAWDHTTSSWKLYPRRPLF 272
            W   DGS +SFWH  W ++ PL   +PRL+ALS+ ++ TV + WD  +  W + PRRPL 
Sbjct: 1537 WLPNDGSSLSFWHSKWHNNIPLSLQIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLN 1596

Query: 273  DREVFVQAECASSFPTPALSGGADHMLWSPDSKRRFFVASARHFYWNLSSPDRPQPHSII 332
            +RE         S P    + G     W+P   +++ VASA+   +  SS  +       
Sbjct: 1597 EREQQTWDSIKMSLPRIHNNRGMCKPTWNPSDSKKYTVASAKDIAFKESSIPKETNWEKE 1656

Query: 333  FLNLWKALIPKKIKFFIWTVIYRRLNTTDRLQHIFKSTALNPSCCPLCHAGSDELDHIFI 392
              +LW++ IP+K KFFIWT+++++LNT D +Q    S +LNPS C  C + +++++H+FI
Sbjct: 1657 LKHLWRSHIPQKCKFFIWTMVHQKLNTMDNIQKRNPSMSLNPSWCISCRSSNEDMNHLFI 1716

Query: 393  HCGVASDIWLSFHLATGINMSIPSQVNWICLE 425
             C  A  +W  +   TG  M + + V  +CL+
Sbjct: 1717 FCPFARSLWNMWSSETGTPM-VNTNVKDLCLQ 1747

[Close]

BLAST of Lag0040824 vs. ExPASy TrEMBL
Match: A0A5A7T5L3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G00210 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.1e-37
Identity = 82/234 (35.04%), Postives = 130/234 (55.56%), Query Frame = 0


Query: 207 FLANTVWNLKDGSKISFWHDSWTDHGPLYQALPRLFALSSRKNMTVSDAWDHTTSSWKLY 266
           F  ++ W +KDG  +SFWH +W   G L    PRL+ LS  +N T+ + WD  T+ W L+
Sbjct: 564 FQNHSSWEIKDGENLSFWHSNWIASGSLSNTYPRLYTLSKAQNATIEELWDPNTNDWNLH 623

Query: 267 PRRPLFDREVFVQAECASSFPTPALSGGADHMLWSPDSKRRFFVASARHFYWNLSSPDRP 326
           PRRPL DRE+ +            L+GG ++M+W+P+ K  +  ASA+     L S +RP
Sbjct: 624 PRRPLNDREIELWTNLKGILKILTLNGGKNNMIWTPNDKGTYTAASAKR---QLLS-ERP 683

Query: 327 QPH---SIIFLNLWKALIPKKIKFFIWTVIYRRLNTTDRLQHIFKSTALNPSCCPLCHAG 386
            P+      +  LWK+ +PKK KFF+W++ +  +NTTD LQ    +T L PS C L  + 
Sbjct: 684 TPNLNERNFYETLWKSKLPKKGKFFMWSLFHESINTTDVLQKRLPNTYLQPSRCFLYKSD 743

Query: 387 SDELDHIFIHCGVASDIWLSFHLATGINMSIPSQVNWICLESFAVKATSQREIL 438
           ++ ++HIFI C +   +W       G+N  I S +N + +    +K  S++ ++
Sbjct: 744 AEGINHIFISCHLTKTLWDKLSRQIGVNFDIRS-INTVSILVGEMKQISRKNVI 792

[Close]

BLAST of Lag0040824 vs. ExPASy TrEMBL
Match: A0A5D3BPP1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1582G00200 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.1e-37
Identity = 82/234 (35.04%), Postives = 130/234 (55.56%), Query Frame = 0


Query: 207 FLANTVWNLKDGSKISFWHDSWTDHGPLYQALPRLFALSSRKNMTVSDAWDHTTSSWKLY 266
           F  ++ W +KDG  +SFWH +W   G L    PRL+ LS  +N T+ + WD  T+ W L+
Sbjct: 539 FQNHSSWEIKDGENLSFWHSNWIASGSLSNTYPRLYTLSKAQNATIEELWDPNTNDWNLH 598

Query: 267 PRRPLFDREVFVQAECASSFPTPALSGGADHMLWSPDSKRRFFVASARHFYWNLSSPDRP 326
           PRRPL DRE+ +            L+GG ++M+W+P+ K  +  ASA+     L S +RP
Sbjct: 599 PRRPLNDREIELWTNLKGILKILTLNGGKNNMIWTPNDKGTYTAASAKR---QLLS-ERP 658

Query: 327 QPH---SIIFLNLWKALIPKKIKFFIWTVIYRRLNTTDRLQHIFKSTALNPSCCPLCHAG 386
            P+      +  LWK+ +PKK KFF+W++ +  +NTTD LQ    +T L PS C L  + 
Sbjct: 659 TPNLNERNFYETLWKSKLPKKGKFFMWSLFHESINTTDVLQKRLPNTYLQPSRCFLYKSD 718

Query: 387 SDELDHIFIHCGVASDIWLSFHLATGINMSIPSQVNWICLESFAVKATSQREIL 438
           ++ ++HIFI C +   +W       G+N  I S +N + +    +K  S++ ++
Sbjct: 719 AEGINHIFISCHLTKTLWDKLSRQIGVNFDIRS-INTVSILVGEMKQISRKNVI 767

[Close]

BLAST of Lag0040824 vs. ExPASy TrEMBL
Match: A0A5A7TTK1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00450 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.1e-36
Identity = 78/207 (37.68%), Postives = 111/207 (53.62%), Query Frame = 0


Query: 207 FLANTVWNLKDGSKISFWHDSWTDHGPLYQALPRLFALSSRKNMTVSDAWDHTTSSWKLY 266
           F +N  W+L +G +ISFW+ +W+  G L  A PRLFALS  K++TV DAW+   + W + 
Sbjct: 765 FRSNQSWDLNNGDQISFWYSNWSIEGRLLTAYPRLFALSLDKDITVKDAWNTIDNQWTIR 824

Query: 267 PRRPLFDREVFVQAECASSFPTPALSGGADHMLWSPDSKRRFFVASARHFYWNLSSPDRP 326
            RR L DRE    A+     P P  + G+    W PDSK  F +ASA+            
Sbjct: 825 FRRELNDRERNKWAKILEILPKPRYNSGSSKPTWIPDSKNSFSIASAKFLISRQLDQSSG 884

Query: 327 QPHSIIFLNLWKALIPKKIKFFIWTVIYRRLNTTDRLQHIFKSTALNPSCCPLCHAGSDE 386
            P S +   +WK+ IP KIKFF+W +I R++NT + +QH   +  L PS C LC   S+ 
Sbjct: 885 DPQSKLLEIIWKSTIPMKIKFFMWCLIQRKINTMEVVQHRMPNICLQPSWCVLCKKDSES 944

Query: 387 LDHIFIHCGVASDIWLSFHLATGINMS 414
             H+F+HC     +W     A  + +S
Sbjct: 945 GTHLFLHCEAVKPLWSFLQNAFSLALS 971

[Close]

BLAST of Lag0040824 vs. ExPASy TrEMBL
Match: A0A5A7UTI6 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005580 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 7.4e-35
Identity = 75/212 (35.38%), Postives = 120/212 (56.60%), Query Frame = 0


Query: 213 WNLKDGSKISFWHDSWTDHGPLYQALPRLFALSSRKNMTVSDAWDHTTSSWKLYPRRPLF 272
           W   DGS +SFWH  W ++ PL    PRL+ALS+ ++ TV + WD  +  W + PRRPL 
Sbjct: 484 WMANDGSSLSFWHSKWHNNIPLSLQFPRLYALSNMQSATVKEIWDQGSDDWNMEPRRPLN 543

Query: 273 DREVFVQAECASSFPTPALSGGADHMLWSPDSKRRFFVASARHFYWNLSSPDRPQPHSII 332
           +RE         S P    + G     W+P   +++ VASA+   +  SS  +       
Sbjct: 544 EREQQTWDSIKMSLPRIHNNRGMCKPSWNPSDSKKYTVASAKDIAFKESSIPKETNWEKE 603

Query: 333 FLNLWKALIPKKIKFFIWTVIYRRLNTTDRLQHIFKSTALNPSCCPLCHAGSDELDHIFI 392
             +LW++ IP+K KFFIWT+++++LNT D++Q    S +LNPS C  C + +++++H+FI
Sbjct: 604 LKHLWRSHIPQKCKFFIWTMVHQKLNTMDKIQKRNPSMSLNPSWCISCRSSNEDMNHLFI 663

Query: 393 HCGVASDIWLSFHLATGINMSIPSQVNWICLE 425
            C  A ++W  +   TG  M+  + V  +CL+
Sbjct: 664 FCPFARNLWNMWSSETGTPMA-TTNVKDLCLQ 694

[Close]

BLAST of Lag0040824 vs. ExPASy TrEMBL
Match: A0A5A7US62 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003960 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.3e-34
Identity = 75/212 (35.38%), Postives = 119/212 (56.13%), Query Frame = 0


Query: 213  WNLKDGSKISFWHDSWTDHGPLYQALPRLFALSSRKNMTVSDAWDHTTSSWKLYPRRPLF 272
            W   DGS +SFWH  W ++ PL   +PRL+ALS+ ++ TV + WD  +  W + PRRPL 
Sbjct: 1537 WLPNDGSSLSFWHSKWHNNIPLSLQIPRLYALSNMQSATVKEIWDQGSDDWNMKPRRPLN 1596

Query: 273  DREVFVQAECASSFPTPALSGGADHMLWSPDSKRRFFVASARHFYWNLSSPDRPQPHSII 332
            +RE         S P    + G     W+P   +++ VASA+   +  SS  +       
Sbjct: 1597 EREQQTWDSIKMSLPRIHNNRGMCKPTWNPSDSKKYTVASAKDIAFKESSIPKETNWEKE 1656

Query: 333  FLNLWKALIPKKIKFFIWTVIYRRLNTTDRLQHIFKSTALNPSCCPLCHAGSDELDHIFI 392
              +LW++ IP+K KFFIWT+++++LNT D +Q    S +LNPS C  C + +++++H+FI
Sbjct: 1657 LKHLWRSHIPQKCKFFIWTMVHQKLNTMDNIQKRNPSMSLNPSWCISCRSSNEDMNHLFI 1716

Query: 393  HCGVASDIWLSFHLATGINMSIPSQVNWICLE 425
             C  A  +W  +   TG  M + + V  +CL+
Sbjct: 1717 FCPFARSLWNMWSSETGTPM-VNTNVKDLCLQ 1747

The following BLAST results are available for this feature:

BLAST of Lag0040824 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037436.1	4.3e-37	35.04	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK00226.1	4.3e-37	35.04	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0046762.1	1.1e-35	37.68	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0056839.1	1.5e-34	35.38	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ993...	[more]
TYK08190.1	2.6e-34	35.38	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0040824 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0040824 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T5L3	2.1e-37	35.04	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3BPP1	2.1e-37	35.04	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TTK1	5.1e-36	37.68	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7UTI6	7.4e-35	35.38	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7US62	1.3e-34	35.38	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Lag0040824 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 318..401 e-value: 8.2E-14 score: 52.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..64
None	No IPR available	PANTHER	PTHR33116:SF38	OS01G0158850 PROTEIN	coord: 197..423
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 197..423

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040824.1	Lag0040824.1	mRNA