
Lag0040819 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGGGTGGATGTGCTGTTACGCCGGGATAACTCATGGAATACGGGCTTGGTTCAGTCAATATTTAAAGAAATTGATGATGAAGCCATACTTGAGATTCCGAGACCACGATGTCTAAGCCAAGATAGGTTAGTATGGCACTATGAGAAACATGGCCTGTACACAGTTAGAAGTGGCTATAGAATGGCTTGTGAGTTAGGGGCTAGGGCGAGTAGCTCGAGTGTGGAACTAATGAGGAAATGGTGGAATTTCCTATGGAACAGACAGATCCCAAGTAAGATAAAGATATTTGGGTGGAGATTGTATTATGGCTACCTTCCTACCTTCCTACTGCCTAAGATGCATAACTATAAACTCAATACATATGCAGCTGTATGCAGAGACTCAAGAACTAGCAGTATAGGTGCTATTATTCGAGATAAAGAAGGGAGGGTAATGCTCACCCTAATGAAGTTGGTGCAGTATGTGCAGGACGTGGATGCTTTAGAGGCTGGGATTCTTGAGACTGGAAGTAGAGACGGATTCAGGTCGTGTGGCGGCCATGATTCGATCGAATCAGAGAGATTGCTCTGAGGTTGGCGTCCTGGTGCAAGCTAAGAGATTAGAGACATCTCGAGAGACTTTCTGTTTTGCTCGATTAATTGGTGTCGGAGAGAGGCCAACCGCGTAGCCCATACAGCAGCACGGCAGGTGCTGGAGCTTGGAGTGCAAGGAGTTTGGCTGGAGGAAGTTCCGGCGTCGATGGTAGAGGAATGTGGCAAAGAAATTTTGGACAGGCTTATGGAATTGTCGAGTGTTTTGTCTCAGAGTTTCTTTTAG ATGAGGGTGGATGTGCTGTTACGCCGGGATAACTCATGGAATACGGGCTTGGTTCAGTCAATATTTAAAGAAATTGATGATGAAGCCATACTTGAGATTCCGAGACCACGATGTCTAAGCCAAGATAGGTTAGTATGGCACTATGAGAAACATGGCCTGTACACAGTTAGAAGTGGCTATAGAATGGCTTGTGAGTTAGGGGCTAGGGCGAGTAGCTCGAGTGTGGAACTAATGAGGAAATGGTGGAATTTCCTATGGAACAGACAGATCCCAAGTAAGATAAAGATATTTGGGTGGAGATTGTATTATGGCTACCTTCCTACCTTCCTACTGCCTAAGATGCATAACTATAAACTCAATACATATGCAGCTGTATGCAGAGACTCAAGAACTAGCAGTATAGGTGCTATTATTCGAGATAAAGAAGGGAGGGTAATGCTCACCCTAATGAAGTTGGTGCAGTATGTGCAGGACGTGGATGCTTTAGAGGCTGGGATTCTTGAGACTGGAAGTAGAGACGGATTCAGAGAGGCCAACCGCGTAGCCCATACAGCAGCACGGCAGGTGCTGGAGCTTGGAGTGCAAGGAGTTTGGCTGGAGGAAGTTCCGGCGTCGATGGTAGAGGAATGTGGCAAAGAAATTTTGGACAGGCTTATGGAATTGTCGAGTGTTTTGTCTCAGAGTTTCTTTTAG ATGAGGGTGGATGTGCTGTTACGCCGGGATAACTCATGGAATACGGGCTTGGTTCAGTCAATATTTAAAGAAATTGATGATGAAGCCATACTTGAGATTCCGAGACCACGATGTCTAAGCCAAGATAGGTTAGTATGGCACTATGAGAAACATGGCCTGTACACAGTTAGAAGTGGCTATAGAATGGCTTGTGAGTTAGGGGCTAGGGCGAGTAGCTCGAGTGTGGAACTAATGAGGAAATGGTGGAATTTCCTATGGAACAGACAGATCCCAAGTAAGATAAAGATATTTGGGTGGAGATTGTATTATGGCTACCTTCCTACCTTCCTACTGCCTAAGATGCATAACTATAAACTCAATACATATGCAGCTGTATGCAGAGACTCAAGAACTAGCAGTATAGGTGCTATTATTCGAGATAAAGAAGGGAGGGTAATGCTCACCCTAATGAAGTTGGTGCAGTATGTGCAGGACGTGGATGCTTTAGAGGCTGGGATTCTTGAGACTGGAAGTAGAGACGGATTCAGAGAGGCCAACCGCGTAGCCCATACAGCAGCACGGCAGGTGCTGGAGCTTGGAGTGCAAGGAGTTTGGCTGGAGGAAGTTCCGGCGTCGATGGTAGAGGAATGTGGCAAAGAAATTTTGGACAGGCTTATGGAATTGTCGAGTGTTTTGTCTCAGAGTTTCTTTTAG MRVDVLLRRDNSWNTGLVQSIFKEIDDEAILEIPRPRCLSQDRLVWHYEKHGLYTVRSGYRMACELGARASSSSVELMRKWWNFLWNRQIPSKIKIFGWRLYYGYLPTFLLPKMHNYKLNTYAAVCRDSRTSSIGAIIRDKEGRVMLTLMKLVQYVQDVDALEAGILETGSRDGFREANRVAHTAARQVLELGVQGVWLEEVPASMVEECGKEILDRLMELSSVLSQSFF Homology
BLAST of Lag0040819 vs. NCBI nr
Match: TXG50387.1 (hypothetical protein EZV62_022911 [Acer yangbiense]) HSP 1 Score: 107.8 bits (268), Expect = 1.2e-19 Identity = 52/130 (40.00%), Postives = 70/130 (53.85%), Query Frame = 0
BLAST of Lag0040819 vs. NCBI nr
Match: XP_024043202.1 (uncharacterized protein LOC112099905 [Citrus clementina]) HSP 1 Score: 103.6 bits (257), Expect = 2.3e-18 Identity = 62/197 (31.47%), Postives = 94/197 (47.72%), Query Frame = 0
BLAST of Lag0040819 vs. NCBI nr
Match: TXG66198.1 (hypothetical protein EZV62_007473 [Acer yangbiense]) HSP 1 Score: 102.8 bits (255), Expect = 4.0e-18 Identity = 45/97 (46.39%), Postives = 62/97 (63.92%), Query Frame = 0
BLAST of Lag0040819 vs. NCBI nr
Match: XP_030487384.1 (uncharacterized protein LOC115704310 [Cannabis sativa]) HSP 1 Score: 101.3 bits (251), Expect = 1.2e-17 Identity = 42/123 (34.15%), Postives = 68/123 (55.28%), Query Frame = 0
BLAST of Lag0040819 vs. NCBI nr
Match: XP_017250619.1 (PREDICTED: uncharacterized protein LOC108221234 [Daucus carota subsp. sativus]) HSP 1 Score: 99.0 bits (245), Expect = 5.7e-17 Identity = 48/126 (38.10%), Postives = 67/126 (53.17%), Query Frame = 0
BLAST of Lag0040819 vs. ExPASy TrEMBL
Match: A0A5C7H0P0 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_022911 PE=4 SV=1) HSP 1 Score: 107.8 bits (268), Expect = 6.0e-20 Identity = 52/130 (40.00%), Postives = 70/130 (53.85%), Query Frame = 0
BLAST of Lag0040819 vs. ExPASy TrEMBL
Match: A0A803Q185 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 6.6e-19 Identity = 47/107 (43.93%), Postives = 67/107 (62.62%), Query Frame = 0
BLAST of Lag0040819 vs. ExPASy TrEMBL
Match: A0A5C7IAM9 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_007473 PE=4 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 1.9e-18 Identity = 45/97 (46.39%), Postives = 62/97 (63.92%), Query Frame = 0
BLAST of Lag0040819 vs. ExPASy TrEMBL
Match: A0A803NLN2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 2.5e-18 Identity = 42/138 (30.43%), Postives = 72/138 (52.17%), Query Frame = 0
BLAST of Lag0040819 vs. ExPASy TrEMBL
Match: A0A803QH76 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 5.6e-18 Identity = 50/137 (36.50%), Postives = 73/137 (53.28%), Query Frame = 0
BLAST of Lag0040819 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 46.2 bits (108), Expect = 4.1e-05 Identity = 27/107 (25.23%), Postives = 47/107 (43.93%), Query Frame = 0
BLAST of Lag0040819 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 45.1 bits (105), Expect = 9.1e-05 Identity = 29/109 (26.61%), Postives = 45/109 (41.28%), Query Frame = 0
BLAST of Lag0040819 vs. TAIR 10
Match: AT2G22440.1 (BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT4G29090.1); Has 208 Blast hits to 191 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 208; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 43.5 bits (101), Expect = 2.7e-04 Identity = 21/63 (33.33%), Postives = 32/63 (50.79%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
|