Lag0040780 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040780
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotransposon gag protein
Location	chr13: 8191901 .. 8193488 (+)
RNA-Seq Expression	Lag0040780
Synteny	Lag0040780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAAACGACCAGAAGAGATGGAGAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGTTATCGGTCATCCAGTGGAAAGATGTGGAATAAATCCAAAGAAAAAAGAGAACCTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCCAAGAAAAGTGAACAAAGGACTTCTGTCTTCGATCGCATCAAACCTCCAACTACTCGTCCTTCAGTATTCCAAAGAATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCGACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAAATGGACAACTTGGAGGTGAAACTTTTCGATGAAGTAAACCGCGACAAGAAGCTTCATAGTAGCGTCCCGTCACGTATGAAGAGGAAATTCTCTGTTCTCATAACTACAGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTGTCTTGACTAATCCTATAAATGAAGGATCTGATCAAGACCATGATAAAGATAAGAGCTTTTAAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGTGCAAAAAAAAAATCTTGAACTACGTTATGACTTGATCCCTATTCCATAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCTCTATAAACAAAAAAAAAAAGGTTCTCCACTGCAGTTCATTCCTCCAAGTTCGAGGGTTCTCACGCGCTTCGCTGCAGTTCCTCCTCCAAGTTCGAGGGTTCTCACGCGCTTCACTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAGTTCGAAGGTTCTCACGTGCTTTGCTGCAGTTCCTTCTCTCCAAGGTCGAAGGTTCTCACGCGCTACGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTGCAAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCACTTCGTGCAGTTCCTTCCTCCAATTCGAAGGTTCTCACGCGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGGTTCTCACGCACTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTGCGCTTCATTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTTCTTCTCCCTAAGTTCGAAGGTTCTCACGTGCTTCGATGCAGTTCCTTCCTCCCTAAGTTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCAAAGGTTCTCACGCGCTGTGA

mRNA sequence

ATGTTGAAACGACCAGAAGAGATGGAGAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGTTATCGGTCATCCAGTGGAAAGATGTGGAATAAATCCAAAGAAAAAAGAGAACCTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCCAAGAAAAGTGAACAAAGGACTTCTGTCTTCGATCGCATCAAACCTCCAACTACTCGTCCTTCAGTATTCCAAAGAATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCGACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAAATGGACAACTTGGAGGTGAAACTTTTCGATGAAGTAAACCGCGACAAGAAGCTTCATAGTAGCGTCCCGTCACGTATGAAGAGGAAATTCTCTGTTCTCATAACTACAGAAGGTTCCTTGAAGTTCATTCCTCCAAGTTCGAGGGTTCTCACGCGCTTCGCTGCAGTTCCTCCTCCAAGTTCGAGGGTTCTCACGCGCTTCACTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAGTTCGAAGGTTCTCACGTGCTTTGCTGCAGTTCCTTCTCTCCAAGGTCGAAGGTTCTCACGCGCTACGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTGCAAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCACTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTGCGCTTCATTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTTCTTCTCCCTAAGTTCGAAGGTTCTCACGTGCTTCGATGCAGTTCCTTCCTCCCTAAGTTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCAAAGGTTCTCACGCGCTGTGA

Coding sequence (CDS)

ATGTTGAAACGACCAGAAGAGATGGAGAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGTTATCGGTCATCCAGTGGAAAGATGTGGAATAAATCCAAAGAAAAAAGAGAACCTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCCAAGAAAAGTGAACAAAGGACTTCTGTCTTCGATCGCATCAAACCTCCAACTACTCGTCCTTCAGTATTCCAAAGAATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCGACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAAATGGACAACTTGGAGGTGAAACTTTTCGATGAAGTAAACCGCGACAAGAAGCTTCATAGTAGCGTCCCGTCACGTATGAAGAGGAAATTCTCTGTTCTCATAACTACAGAAGGTTCCTTGAAGTTCATTCCTCCAAGTTCGAGGGTTCTCACGCGCTTCGCTGCAGTTCCTCCTCCAAGTTCGAGGGTTCTCACGCGCTTCACTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAGTTCGAAGGTTCTCACGTGCTTTGCTGCAGTTCCTTCTCTCCAAGGTCGAAGGTTCTCACGCGCTACGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTGCAAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCACTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTGCGCTTCATTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTTCTTCTCCCTAAGTTCGAAGGTTCTCACGTGCTTCGATGCAGTTCCTTCCTCCCTAAGTTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCAAAGGTTCTCACGCGCTGTGA

Protein sequence

MLKRPEEMEKVDDPKYCKYHRVIGHPVERCGINPKKKENLATSYCIDVEEVDNSKKSEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSLKFIPPSSRVLTRFAAVPPPSSRVLTRFTAVPSPQVRRFTHFAAVPSPKFEGSHVLCCSSFSPRSKVLTRYVAVLSPQVRRFTHFAAVPSPKFEGSHALRSANSFPQVRRFSRTSLQFLPPKFEGSHALRCSSFLTVRRFSRASLQFLPPKFEGSHVASLQFLPPSLKVLTSLRFIAVPSSKFEGSHALRCSFFSLSSKVLTCFDAVPSSLSSKVLTRFAAVPSSKFEGFKGSHAL

Homology

[Close]

BLAST of Lag0040780 vs. NCBI nr
Match: KAA0065608.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK07179.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 168.7 bits (426), Expect = 1.0e-37
Identity = 109/234 (46.58%), Postives = 132/234 (56.41%), Query Frame = 0


Query: 3   KRPEEMEKVDDPKYCKYHRVIGHPVERC-------------------------------- 62
           KRPE+  KVDDP YCKYHRVI H +E+C                                
Sbjct: 17  KRPEQAGKVDDPNYCKYHRVISHLIEKCFVLKELILKLAHKNKIELDIDEVAQTNHAAVN 76

Query: 63  ---GINPK------------KKENLATSYC-----IDV-------EEVDNSKKSEQRTSV 122
               ++P              +E L  + C     ++V       EEVDNS + +QRT V
Sbjct: 77  MTSSVSPSILLYDQSFLEDHPEEILEVTACHTTSIVEVDNSYDSYEEVDNSNEIKQRTFV 136

Query: 123 FDRIKPPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRL 178
           FDRIKP TTR SVFQR+SMA  EEE QC  ST TR S F+RLS+STSKK +PSTS FDRL
Sbjct: 137 FDRIKPLTTRSSVFQRLSMAMKEEEKQCPTSTYTRTSTFKRLSISTSKKDRPSTSAFDRL 196

[Close]

BLAST of Lag0040780 vs. NCBI nr
Match: KAA0065984.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28929.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 164.1 bits (414), Expect = 2.6e-36
Identity = 108/234 (46.15%), Postives = 130/234 (55.56%), Query Frame = 0


Query: 3   KRPEEMEKVDDPKYCKYHRVIGHPVERCGI------------------------------ 62
           KRP +  KVDDP YCKYHRVI HPVE+C +                              
Sbjct: 177 KRPGQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLARENKIQLDIDEPIKGKDEDFL 236

Query: 63  NPKKKENLA----------------------TSYCIDV-------EEVDNSKKSEQRTSV 122
            P++   LA                      T+  ++V       EEVDNS + +QRTSV
Sbjct: 237 QPRRSITLAEFLPRSFFEDHPEEVIEVTACHTTSIVEVDNNYDSYEEVDNSNEIKQRTSV 296

Query: 123 FDRIKPPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRL 178
           FDRIKP TTR  VFQR+SMA  EEENQC  ST TR SAF+RLS+STSKK +PSTS FDRL
Sbjct: 297 FDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYTRTSAFKRLSISTSKKHRPSTSAFDRL 356

[Close]

BLAST of Lag0040780 vs. NCBI nr
Match: KAA0066166.1 (Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 161.8 bits (408), Expect = 1.3e-35
Identity = 100/225 (44.44%), Postives = 125/225 (55.56%), Query Frame = 0


Query: 3   KRPEEMEKVDDPKYCKYHRVIGHPVERCGINPKKKENLATSYCIDV-------------- 62
           KRP++  KVDDP YCKYHRVI HPVE+C +  K    LA    I++              
Sbjct: 153 KRPKQARKVDDPNYCKYHRVISHPVEKCFLLKKMILKLAREKKIELDIYEVAQTNHVAVE 212

Query: 63  ----------------------------------------EEVDNSKKSEQRTSVFDRIK 122
                                                   EEVDNS + +QRT VFDRIK
Sbjct: 213 MTLSVPPSTHFLNDHLEEVSEVTACHAVGIVEVDNNYASSEEVDNSNEVKQRTYVFDRIK 272

Query: 123 PPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSD 174
           P  TR S+FQR SMA  EE+NQC MSTST+ SAF+RLS+STSK+ +P TS FDRLK+T+D
Sbjct: 273 PSITRSSIFQRWSMATKEEKNQCPMSTSTQTSAFKRLSISTSKRDRPLTSDFDRLKMTND 332

[Close]

BLAST of Lag0040780 vs. NCBI nr
Match: KAA0056121.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 158.3 bits (399), Expect = 1.4e-34
Identity = 108/247 (43.72%), Postives = 130/247 (52.63%), Query Frame = 0


Query: 3   KRPEEMEKVDDPKYCKYHRVIGHPVERCGI------------------------------ 62
           KRPE+  KVDDP YCKYHRVI HPVE+C +                              
Sbjct: 464 KRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLAREKKIELDIDEVAQTNHAIEM 523

Query: 63  --NPKK----------------------------KENLATSYC-----IDVE-------E 122
             NP K                            +E L  + C     ++V+       E
Sbjct: 524 TSNPIKGKDEDFLQLRRSITLAEFLPRSFLEDDPEEILEVTACHAASIVEVDNNYGSSKE 583

Query: 123 VDNSKKSEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTS 178
           V+NS +  QRTSVFDRIKP TTR SVFQR+S+A  EEENQC     TR S  +RLS+ST 
Sbjct: 584 VNNSNEINQRTSVFDRIKPSTTRSSVFQRLSVATKEEENQCPTFIYTRTSTSKRLSISTL 643

[Close]

BLAST of Lag0040780 vs. NCBI nr
Match: KAA0035697.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30849.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 157.5 bits (397), Expect = 2.4e-34
Identity = 102/225 (45.33%), Postives = 128/225 (56.89%), Query Frame = 0


Query: 3   KRPEEMEKVDDPKYCKYHRVIGHPVERCGI------------------------------ 62
           K+PE++ KVDD  YCKYH VI HPVE+C +                              
Sbjct: 76  KQPEQVGKVDDLNYCKYHWVISHPVEKCFVLKELILKLAREKKIKLDIDEIAQTNHVVVE 135

Query: 63  ------------NPKKKENLATSYC--IDVEEVD----------NSKKSEQRTSVFDRIK 122
                       + ++KE L  + C  I + EVD          NS + +Q TSVF+RIK
Sbjct: 136 MTSSVPPATLLYDQREKEVLEVTACHAISIVEVDNNYASSKEVGNSNEIKQTTSVFNRIK 195

Query: 123 PPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSD 174
           P TTR S+FQR+SMA  EEENQ    TST+ SAF+RL +S SKK +PSTS FDRLK+T+D
Sbjct: 196 PSTTRSSIFQRLSMATKEEENQYPTFTSTQTSAFKRLCISISKKDRPSTSAFDRLKMTND 255

[Close]

BLAST of Lag0040780 vs. ExPASy TrEMBL
Match: A0A5D3CA53 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G00600 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 5.0e-38
Identity = 109/234 (46.58%), Postives = 132/234 (56.41%), Query Frame = 0


Query: 3   KRPEEMEKVDDPKYCKYHRVIGHPVERC-------------------------------- 62
           KRPE+  KVDDP YCKYHRVI H +E+C                                
Sbjct: 17  KRPEQAGKVDDPNYCKYHRVISHLIEKCFVLKELILKLAHKNKIELDIDEVAQTNHAAVN 76

Query: 63  ---GINPK------------KKENLATSYC-----IDV-------EEVDNSKKSEQRTSV 122
               ++P              +E L  + C     ++V       EEVDNS + +QRT V
Sbjct: 77  MTSSVSPSILLYDQSFLEDHPEEILEVTACHTTSIVEVDNSYDSYEEVDNSNEIKQRTFV 136

Query: 123 FDRIKPPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRL 178
           FDRIKP TTR SVFQR+SMA  EEE QC  ST TR S F+RLS+STSKK +PSTS FDRL
Sbjct: 137 FDRIKPLTTRSSVFQRLSMAMKEEEKQCPTSTYTRTSTFKRLSISTSKKDRPSTSAFDRL 196

[Close]

BLAST of Lag0040780 vs. ExPASy TrEMBL
Match: A0A5A7VFA5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00130 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.2e-36
Identity = 108/234 (46.15%), Postives = 130/234 (55.56%), Query Frame = 0


Query: 3   KRPEEMEKVDDPKYCKYHRVIGHPVERCGI------------------------------ 62
           KRP +  KVDDP YCKYHRVI HPVE+C +                              
Sbjct: 177 KRPGQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLARENKIQLDIDEPIKGKDEDFL 236

Query: 63  NPKKKENLA----------------------TSYCIDV-------EEVDNSKKSEQRTSV 122
            P++   LA                      T+  ++V       EEVDNS + +QRTSV
Sbjct: 237 QPRRSITLAEFLPRSFFEDHPEEVIEVTACHTTSIVEVDNNYDSYEEVDNSNEIKQRTSV 296

Query: 123 FDRIKPPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRL 178
           FDRIKP TTR  VFQR+SMA  EEENQC  ST TR SAF+RLS+STSKK +PSTS FDRL
Sbjct: 297 FDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYTRTSAFKRLSISTSKKHRPSTSAFDRL 356

[Close]

BLAST of Lag0040780 vs. ExPASy TrEMBL
Match: A0A5A7VII4 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G001730 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 6.2e-36
Identity = 100/225 (44.44%), Postives = 125/225 (55.56%), Query Frame = 0


Query: 3   KRPEEMEKVDDPKYCKYHRVIGHPVERCGINPKKKENLATSYCIDV-------------- 62
           KRP++  KVDDP YCKYHRVI HPVE+C +  K    LA    I++              
Sbjct: 153 KRPKQARKVDDPNYCKYHRVISHPVEKCFLLKKMILKLAREKKIELDIYEVAQTNHVAVE 212

Query: 63  ----------------------------------------EEVDNSKKSEQRTSVFDRIK 122
                                                   EEVDNS + +QRT VFDRIK
Sbjct: 213 MTLSVPPSTHFLNDHLEEVSEVTACHAVGIVEVDNNYASSEEVDNSNEVKQRTYVFDRIK 272

Query: 123 PPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSD 174
           P  TR S+FQR SMA  EE+NQC MSTST+ SAF+RLS+STSK+ +P TS FDRLK+T+D
Sbjct: 273 PSITRSSIFQRWSMATKEEKNQCPMSTSTQTSAFKRLSISTSKRDRPLTSDFDRLKMTND 332

[Close]

BLAST of Lag0040780 vs. ExPASy TrEMBL
Match: A0A5A7URH1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17350G00010 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 6.8e-35
Identity = 108/247 (43.72%), Postives = 130/247 (52.63%), Query Frame = 0


Query: 3   KRPEEMEKVDDPKYCKYHRVIGHPVERCGI------------------------------ 62
           KRPE+  KVDDP YCKYHRVI HPVE+C +                              
Sbjct: 464 KRPEQAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLAREKKIELDIDEVAQTNHAIEM 523

Query: 63  --NPKK----------------------------KENLATSYC-----IDVE-------E 122
             NP K                            +E L  + C     ++V+       E
Sbjct: 524 TSNPIKGKDEDFLQLRRSITLAEFLPRSFLEDDPEEILEVTACHAASIVEVDNNYGSSKE 583

Query: 123 VDNSKKSEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTS 178
           V+NS +  QRTSVFDRIKP TTR SVFQR+S+A  EEENQC     TR S  +RLS+ST 
Sbjct: 584 VNNSNEINQRTSVFDRIKPSTTRSSVFQRLSVATKEEENQCPTFIYTRTSTSKRLSISTL 643

[Close]

BLAST of Lag0040780 vs. ExPASy TrEMBL
Match: A0A5D3E4T1 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00460 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.2e-34
Identity = 102/225 (45.33%), Postives = 128/225 (56.89%), Query Frame = 0


Query: 3   KRPEEMEKVDDPKYCKYHRVIGHPVERCGI------------------------------ 62
           K+PE++ KVDD  YCKYH VI HPVE+C +                              
Sbjct: 76  KQPEQVGKVDDLNYCKYHWVISHPVEKCFVLKELILKLAREKKIKLDIDEIAQTNHVVVE 135

Query: 63  ------------NPKKKENLATSYC--IDVEEVD----------NSKKSEQRTSVFDRIK 122
                       + ++KE L  + C  I + EVD          NS + +Q TSVF+RIK
Sbjct: 136 MTSSVPPATLLYDQREKEVLEVTACHAISIVEVDNNYASSKEVGNSNEIKQTTSVFNRIK 195

Query: 123 PPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSD 174
           P TTR S+FQR+SMA  EEENQ    TST+ SAF+RL +S SKK +PSTS FDRLK+T+D
Sbjct: 196 PSTTRSSIFQRLSMATKEEENQYPTFTSTQTSAFKRLCISISKKDRPSTSAFDRLKMTND 255

The following BLAST results are available for this feature:

BLAST of Lag0040780 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065608.1	1.0e-37	46.58	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK07179.1 retrotranspos...	[more]
KAA0065984.1	2.6e-36	46.15	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28929.1 ty3-gyp...	[more]
KAA0066166.1	1.3e-35	44.44	Retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0056121.1	1.4e-34	43.72	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0035697.1	2.4e-34	45.33	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30849.1 retrotranspos...	[more]

BLAST of Lag0040780 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0040780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CA53	5.0e-38	46.58	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7VFA5	1.2e-36	46.15	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7VII4	6.2e-36	44.44	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7URH1	6.8e-35	43.72	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3E4T1	1.2e-34	45.33	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of Lag0040780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040780.1	Lag0040780.1	mRNA