Lag0040779 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0040779
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Locationchr13: 8190003 .. 8191384 (-)
RNA-Seq ExpressionLag0040779
SyntenyLag0040779
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAAAAAATTGTAAGAAAACCAACATAATTTTTAAAATAAAAAATAAAAAATCAAATAAAGTTATGAAACAAAACCATAATTCTTCAATTTGAGATTTGTAAGATTTGATTGGTTGAATATCAAGCTAGAATATAAGGTGGGTTTGATGTAATATCCAATTAGATTCCACCCATCCTTTATCACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTCAAAATGACTTTTATTTTTGTGCATGTGAAATCTAGAGATGGGTTAATTACCATGTCACTAACGTAATGGGGTTTTGATAGCAAGAAATAAAATGTTGCAAAATTAAAATTATATAATTAAATCAATACATAGTAAATTCAGAGATTAAATCACTGCCAATTTTAAATGAAATAGACTAAGTTCATAAACTAAATCGTTATTTCAATGAAAGTATATATAATATAAGTATCAAATACAATTCCTAATTAAAAATCACAATCTTAACCTCTATGCTTTTAACTTTTTTTTTGTCCTAGGATTAAAGTTTACTGGATATATCTCTGTCATTAGTAAAGAAAAGTAAAAATCCAACGAGACAAATTATGAGTGATATGATGTGATATTTTATTTTAATGAAACAGAGTTGACATGTCATATTGATAAAATTGCTAATTAACTTGAACATGTTGGTATATAATATTTATATCCTCGACAAAAAAATCAAAAGGTTAAATTTCACTCCATATAGTGTCCAAAAAAAAAATCAAGCATATAACATGTTACACGATTGTTTAAGATGTCTTTATTTCTTCTAGAAGGTCGTACATAGGGTCAACCTGGTTTCCGTTCATCTCGATTCGACGAACTATGTTCTGTGGAAGTTCCAGATCTCACCGCTATTGAAATCGCACAAGCTCTTTAAGTATGTCGATGGCACGGTTGTTGCTCCTGAAGCCATCATCCGATCTGAAGGACAGCCACCGCGAGTCAATCCTGAACATGAAGTGTGGTATGAACGCGATCAGGCGCTAATCACTTTGATTAACGCTACATTGACTCAGACGACCTTATCCTATGTCATTGGGTGCAAGACTTCTAAGGAGGTATGGGACACTCTGGAAAAACACTTCTCCTCCTCCACTCGCACCAATATCATTGGTCTTAAGTCTGAATTGCAGAGCATTTCAAAACAGTCAGGCGAATCTATTGATACATATGTTCGTCGAGTCAAGGAGATATTCAACAAATTAGCTGTTGTTTCTGTGATAATCGATGCGGAAGATTTAATAATCTACACGGTCAATGGCTTGCCATCCACCTACAATGTCTTCAAAACTTCTCTACGTACTCGGTCTCAGAGTCTTACATTTGATGAGCGTTACACATTTTAA

mRNA sequence

ATGGTCGTACATAGGGTCAACCTGGTTTCCGTTCATCTCGATTCGACGAACTATGTTCTGTGGAAGTTCCAGATCTCACCGCTATTGAAATCGCACAAGCTCTTTAAGTATGTCGATGGCACGGTTGTTGCTCCTGAAGCCATCATCCGATCTGAAGGACAGCCACCGCGAGTCAATCCTGAACATGAAGTGTGGTATGAACGCGATCAGGCGCTAATCACTTTGATTAACGCTACATTGACTCAGACGACCTTATCCTATGTCATTGGGTGCAAGACTTCTAAGGAGGTATGGGACACTCTGGAAAAACACTTCTCCTCCTCCACTCGCACCAATATCATTGGTCTTAAGTCTGAATTGCAGAGCATTTCAAAACAGTCAGGCGAATCTATTGATACATATGTTCGTCGAGTCAAGGAGATATTCAACAAATTAGCTGTTGTTTCTGTGATAATCGATGCGGAAGATTTAATAATCTACACGGTCAATGGCTTGCCATCCACCTACAATGTCTTCAAAACTTCTCTACGTACTCGGTCTCAGAGTCTTACATTTGATGAGCGTTACACATTTTAA

Coding sequence (CDS)

ATGGTCGTACATAGGGTCAACCTGGTTTCCGTTCATCTCGATTCGACGAACTATGTTCTGTGGAAGTTCCAGATCTCACCGCTATTGAAATCGCACAAGCTCTTTAAGTATGTCGATGGCACGGTTGTTGCTCCTGAAGCCATCATCCGATCTGAAGGACAGCCACCGCGAGTCAATCCTGAACATGAAGTGTGGTATGAACGCGATCAGGCGCTAATCACTTTGATTAACGCTACATTGACTCAGACGACCTTATCCTATGTCATTGGGTGCAAGACTTCTAAGGAGGTATGGGACACTCTGGAAAAACACTTCTCCTCCTCCACTCGCACCAATATCATTGGTCTTAAGTCTGAATTGCAGAGCATTTCAAAACAGTCAGGCGAATCTATTGATACATATGTTCGTCGAGTCAAGGAGATATTCAACAAATTAGCTGTTGTTTCTGTGATAATCGATGCGGAAGATTTAATAATCTACACGGTCAATGGCTTGCCATCCACCTACAATGTCTTCAAAACTTCTCTACGTACTCGGTCTCAGAGTCTTACATTTGATGAGCGTTACACATTTTAA

Protein sequence

MVVHRVNLVSVHLDSTNYVLWKFQISPLLKSHKLFKYVDGTVVAPEAIIRSEGQPPRVNPEHEVWYERDQALITLINATLTQTTLSYVIGCKTSKEVWDTLEKHFSSSTRTNIIGLKSELQSISKQSGESIDTYVRRVKEIFNKLAVVSVIIDAEDLIIYTVNGLPSTYNVFKTSLRTRSQSLTFDERYTF
Homology
BLAST of Lag0040779 vs. NCBI nr
Match: XP_022158689.1 (uncharacterized protein LOC111025150 [Momordica charantia])

HSP 1 Score: 209.1 bits (531), Expect = 3.3e-50
Identity = 99/186 (53.23%), Postives = 141/186 (75.81%), Query Frame = 0

Query: 7   NLVSVHLDSTNYVLWKFQISPLLKSHKLFKYVDGTVVAPEAII-----RSEGQPPRVNPE 66
           NLVS+ LDS+N+VLWKFQ++ +LK+HKL+ ++DG+   P   +      S   PP  NP 
Sbjct: 23  NLVSLRLDSSNFVLWKFQLTAILKAHKLYGFIDGSTPKPAEFLVSXXDXSSSXPPAANPA 82

Query: 67  HEVWYERDQALITLINATLTQTTLSYVIGCKTSKEVWDTLEKHFSSSTRTNIIGLKSELQ 126
              W  +D AL+TL+NA L+ + L+YV+GC +S++VW TL KH+SSS+RTN++ LKS+LQ
Sbjct: 83  FSEWIAKDHALMTLLNAXLSSSALAYVVGCDSSQQVWQTLVKHYSSSSRTNVVNLKSDLQ 142

Query: 127 SISKQSGESIDTYVRRVKEIFNKLAVVSVIIDAEDLIIYTVNGLPSTYNVFKTSLRTRSQ 186
           SISK+ G SID YV+R+KE+ +KLA V V++D EDL+IYT+N LP  +N F+TS+RTRSQ
Sbjct: 143 SISKKPGXSIDXYVQRIKELKDKLANVXVLVDNEDLLIYTLNXLPPEFNXFRTSMRTRSQ 202

Query: 187 SLTFDE 188
           S++F+E
Sbjct: 203 SVSFEE 208

BLAST of Lag0040779 vs. NCBI nr
Match: KAE8645659.1 (hypothetical protein Csa_020439 [Cucumis sativus])

HSP 1 Score: 206.8 bits (525), Expect = 1.6e-49
Identity = 100/182 (54.95%), Postives = 140/182 (76.92%), Query Frame = 0

Query: 7   NLVSVHLDSTNYVLWKFQISPLLKSHKLFKYVDGTVVAPEAIIRSEGQ-PPRVNPEHEVW 66
           NL+S+ LDSTN+VLWKFQ++ +LK+HKLF +VDGT   P+    +    PP+ NP +E W
Sbjct: 28  NLISMRLDSTNFVLWKFQLTAILKAHKLFGFVDGTNPCPQTSPSTTSTVPPQTNPLYEDW 87

Query: 67  YERDQALITLINATLTQTTLSYVIGCKTSKEVWDTLEKHFSSSTRTNIIGLKSELQSISK 126
             +DQAL+T+INATL+   L+YV+G  +SK+VWD L K +SS +R+N++ LKS+LQ+I K
Sbjct: 88  IAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYK 147

Query: 127 QSGESIDTYVRRVKEIFNKLAVVSVIIDAEDLIIYTVNGLPSTYNVFKTSLRTRSQSLTF 186
           +  ESID Y++R+KEI +KLA VS  I+ EDL+IY +NGLP+ YN F+TS+RTRSQ +TF
Sbjct: 148 KPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTF 207

Query: 187 DE 188
           +E
Sbjct: 208 EE 209

BLAST of Lag0040779 vs. NCBI nr
Match: XP_011658579.1 (uncharacterized protein LOC105436058 [Cucumis sativus])

HSP 1 Score: 206.8 bits (525), Expect = 1.6e-49
Identity = 100/182 (54.95%), Postives = 140/182 (76.92%), Query Frame = 0

Query: 7   NLVSVHLDSTNYVLWKFQISPLLKSHKLFKYVDGTVVAPEAIIRSEGQ-PPRVNPEHEVW 66
           NL+S+ LDSTN+VLWKFQ++ +LK+HKLF +VDGT   P+    +    PP+ NP +E W
Sbjct: 28  NLISMRLDSTNFVLWKFQLTAILKAHKLFGFVDGTNPCPQTSPSTTSTVPPQTNPLYEDW 87

Query: 67  YERDQALITLINATLTQTTLSYVIGCKTSKEVWDTLEKHFSSSTRTNIIGLKSELQSISK 126
             +DQAL+T+INATL+   L+YV+G  +SK+VWD L K +SS +R+N++ LKS+LQ+I K
Sbjct: 88  IAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYK 147

Query: 127 QSGESIDTYVRRVKEIFNKLAVVSVIIDAEDLIIYTVNGLPSTYNVFKTSLRTRSQSLTF 186
           +  ESID Y++R+KEI +KLA VS  I+ EDL+IY +NGLP+ YN F+TS+RTRSQ +TF
Sbjct: 148 KPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTF 207

Query: 187 DE 188
           +E
Sbjct: 208 EE 209

BLAST of Lag0040779 vs. NCBI nr
Match: KAG6588985.1 (Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 205.7 bits (522), Expect = 3.6e-49
Identity = 101/182 (55.49%), Postives = 141/182 (77.47%), Query Frame = 0

Query: 7   NLVSVHLDSTNYVLWKFQISPLLKSHKLFKYVDGTVVAPEAIIRSEGQP-PRVNPEHEVW 66
           NL+S+ LDSTNYVLWKFQ++ LLK+HKLF ++DGT            QP P  NP ++ W
Sbjct: 28  NLISIKLDSTNYVLWKFQLTTLLKAHKLFGFIDGT------------QPCPISNPSYDDW 87

Query: 67  YERDQALITLINATLTQTTLSYVIGCKTSKEVWDTLEKHFSSSTRTNIIGLKSELQSISK 126
           + +DQAL+T+INATL+   L+YV+G  TSK+VW+ L K +SSS+R+N++ LKS+LQ+ISK
Sbjct: 88  FAKDQALMTVINATLSPEALAYVVGSTTSKQVWNVLAKLYSSSSRSNVVNLKSDLQTISK 147

Query: 127 QSGESIDTYVRRVKEIFNKLAVVSVIIDAEDLIIYTVNGLPSTYNVFKTSLRTRSQSLTF 186
           +S ESID Y++R+KEI +KLA VS +++ EDL+IY +NGLP+ YN F+TS+RTRS  +TF
Sbjct: 148 KSDESIDAYIKRIKEIKDKLANVSTVVNDEDLLIYALNGLPTEYNTFRTSMRTRSTPVTF 197

Query: 187 DE 188
           +E
Sbjct: 208 EE 197

BLAST of Lag0040779 vs. NCBI nr
Match: XP_008448007.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo])

HSP 1 Score: 205.7 bits (522), Expect = 3.6e-49
Identity = 99/184 (53.80%), Postives = 139/184 (75.54%), Query Frame = 0

Query: 7   NLVSVHLDSTNYVLWKFQISPLLKSHKLFKYVDGTVVAPEAIIRSEGQ---PPRVNPEHE 66
           NL+S+ LDSTN+VLWKFQ++ +LK+HKL+ ++DGT   P     S      PP+ NP +E
Sbjct: 28  NLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPPRTNNSSSTSTVPPQSNPSYE 87

Query: 67  VWYERDQALITLINATLTQTTLSYVIGCKTSKEVWDTLEKHFSSSTRTNIIGLKSELQSI 126
            W  +DQAL+T+INATL+   L+YV+G  +SK+VWD L K +SS +R+N++ LKS+LQ+I
Sbjct: 88  DWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTI 147

Query: 127 SKQSGESIDTYVRRVKEIFNKLAVVSVIIDAEDLIIYTVNGLPSTYNVFKTSLRTRSQSL 186
            K+  ESID Y++R+KEI +KLA VS  I+ EDL+IY +NGLP+ YN F+TS+RTRSQ +
Sbjct: 148 YKKPDESIDAYIKRIKEIKDKLANVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPV 207

Query: 187 TFDE 188
           TF+E
Sbjct: 208 TFEE 211

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158689.13.3e-5053.23uncharacterized protein LOC111025150 [Momordica charantia][more]
KAE8645659.11.6e-4954.95hypothetical protein Csa_020439 [Cucumis sativus][more]
XP_011658579.11.6e-4954.95uncharacterized protein LOC105436058 [Cucumis sativus][more]
KAG6588985.13.6e-4955.49Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyr... [more]
XP_008448007.13.6e-4953.80PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 65..187
e-value: 4.6E-25
score: 88.0
NoneNo IPR availablePANTHERPTHR47481:SF3GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATEDcoord: 6..187
NoneNo IPR availablePANTHERPTHR47481FAMILY NOT NAMEDcoord: 6..187
IPR029472Retrotransposon Copia-like, N-terminalPFAMPF14244Retrotran_gag_3coord: 7..46
e-value: 5.4E-8
score: 32.5

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0040779.1Lag0040779.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding